; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg22689 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22689
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor LHW-like
Genome locationCarg_Chr11:4727213..4728086
RNA-Seq ExpressionCarg22689
SyntenyCarg22689
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0048364 - root development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR025610 - Transcription factor MYC/MYB N-terminal
IPR033260 - Transcription factor LHW
IPR043561 - Transcription factor LHW-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588244.1 Transcription factor LHW, partial [Cucurbita argyrosperma subsp. sororia]5.1e-77100Show/hide
Query:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV
        MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV
Subjt:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV

Query:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ
        GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ
Subjt:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ

KAG7022161.1 Transcription factor LHW, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-77100Show/hide
Query:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV
        MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV
Subjt:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV

Query:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQV
        GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQV
Subjt:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQV

XP_022930928.1 transcription factor LHW-like [Cucurbita moschata]3.3e-7698.56Show/hide
Query:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV
        MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEG+LFSLMKQMMCSKQISLVGEGIV
Subjt:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV

Query:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ
        GRAAFTGNHQWILSSDST+DAYPPEVLNELHQQFLAGMQ
Subjt:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ

XP_023006039.1 transcription factor LHW-like isoform X1 [Cucurbita maxima]1.4e-7497.84Show/hide
Query:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV
        MG LLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQ LPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEG+LFSLMKQMMCSKQISLVGEGIV
Subjt:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV

Query:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ
        GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ
Subjt:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ

XP_023006047.1 transcription factor LHW-like isoform X2 [Cucurbita maxima]1.4e-7497.84Show/hide
Query:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV
        MG LLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQ LPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEG+LFSLMKQMMCSKQISLVGEGIV
Subjt:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV

Query:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ
        GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ
Subjt:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ

TrEMBL top hitse value%identityAlignment
A0A6J1EWW9 transcription factor LHW-like1.6e-7698.56Show/hide
Query:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV
        MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEG+LFSLMKQMMCSKQISLVGEGIV
Subjt:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV

Query:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ
        GRAAFTGNHQWILSSDST+DAYPPEVLNELHQQFLAGMQ
Subjt:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ

A0A6J1H9K5 transcription factor LHW-like5.2e-5980Show/hide
Query:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGC------SSMQQANQVEGELFSLMKQMMCSKQISL
        M F LKETLKALCGSNQW YAVFWKIGCQN KLLIWEECHYQ LPSFESSG+GSSK LPL +WEGC       S QQAN+V+ +L+SL+ +MM +KQISL
Subjt:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGC------SSMQQANQVEGELFSLMKQMMCSKQISL

Query:  VGEGIVGRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ
        VGEGIVGRAAFTGNHQWILSS+ TRDAYPPEVLNELHQQFLAGMQ
Subjt:  VGEGIVGRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ

A0A6J1JIF4 transcription factor LHW-like6.8e-5979.31Show/hide
Query:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGC------SSMQQANQVEGELFSLMKQMMCSKQISL
        M F LKETLKALCGSNQW Y+VFWKIGCQN KLLIWEECHYQ LPSFESSG+GSSK LPL +WEGC      SS QQAN+V+ +L+SL+ +MM +KQISL
Subjt:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGC------SSMQQANQVEGELFSLMKQMMCSKQISL

Query:  VGEGIVGRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ
        VGEGIVGRAAFTGNHQWILSS+ TRDAYPPEVLNELHQQFLAGM+
Subjt:  VGEGIVGRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ

A0A6J1KUU9 transcription factor LHW-like isoform X26.7e-7597.84Show/hide
Query:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV
        MG LLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQ LPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEG+LFSLMKQMMCSKQISLVGEGIV
Subjt:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV

Query:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ
        GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ
Subjt:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ

A0A6J1L114 transcription factor LHW-like isoform X16.7e-7597.84Show/hide
Query:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV
        MG LLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQ LPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEG+LFSLMKQMMCSKQISLVGEGIV
Subjt:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV

Query:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ
        GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ
Subjt:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ

SwissProt top hitse value%identityAlignment
P0C7P8 Transcription factor EMB14442.5e-1028.78Show/hide
Query:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV
        MG+ L++ L+++C +  W+YAVFWK+   +P +L  E+ +           N    L+P        S+         L   + +M  S  +  +GEGIV
Subjt:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV

Query:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ
        G+ A +G HQWI S          +V N    Q  AG++
Subjt:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ

Q58G01 Transcription factor bHLH1559.9e-0727.14Show/hide
Query:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKL-LIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGI
        MG   +E LK+ C +  W YAVFW++  +  ++ L  E+ +Y H        +G             ++M  A+   G   + M     S  +  +GEGI
Subjt:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKL-LIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGI

Query:  VGRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ
        VG+ A +G HQW+   +        E  N    Q  AG++
Subjt:  VGRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ

Q7XJU0 Transcription factor bHLH1572.6e-0727.86Show/hide
Query:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV
        MG   K  LK+LC S+ WSYAVFW+    N  +L +EE +                                   + +  +L+  M+   Q  ++G+GIV
Subjt:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV

Query:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQV
        G  A +GNHQW+ S    +  +      E   QFL G ++
Subjt:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQV

Q9XIN0 Transcription factor LHW4.0e-3251.08Show/hide
Query:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV
        MG LL+E L+++C +NQWSYAVFWKIGCQN  LLIWEEC+ +     ESS N         D +G   +Q           L  +MM + +I LVGEG+V
Subjt:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV

Query:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ
        GRAAFTG+HQWIL++   RD +PPEV+NE+  QF AG+Q
Subjt:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ

Arabidopsis top hitse value%identityAlignment
AT1G06150.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.8e-1128.78Show/hide
Query:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV
        MG+ L++ L+++C +  W+YAVFWK+   +P +L  E+ +           N    L+P        S+         L   + +M  S  +  +GEGIV
Subjt:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV

Query:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ
        G+ A +G HQWI S          +V N    Q  AG++
Subjt:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ

AT1G06150.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.8e-1128.78Show/hide
Query:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV
        MG+ L++ L+++C +  W+YAVFWK+   +P +L  E+ +           N    L+P        S+         L   + +M  S  +  +GEGIV
Subjt:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV

Query:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ
        G+ A +G HQWI S          +V N    Q  AG++
Subjt:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ

AT1G64625.1 Serine/threonine-protein kinase WNK (With No Lysine)-related1.8e-0827.86Show/hide
Query:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV
        MG   K  LK+LC S+ WSYAVFW+    N  +L +EE +                                   + +  +L+  M+   Q  ++G+GIV
Subjt:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV

Query:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQV
        G  A +GNHQW+ S    +  +      E   QFL G ++
Subjt:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQV

AT2G27230.1 transcription factor-related2.8e-3351.08Show/hide
Query:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV
        MG LL+E L+++C +NQWSYAVFWKIGCQN  LLIWEEC+ +     ESS N         D +G   +Q           L  +MM + +I LVGEG+V
Subjt:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV

Query:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ
        GRAAFTG+HQWIL++   RD +PPEV+NE+  QF AG+Q
Subjt:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ

AT2G27230.2 transcription factor-related2.8e-3351.08Show/hide
Query:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV
        MG LL+E L+++C +NQWSYAVFWKIGCQN  LLIWEEC+ +     ESS N         D +G   +Q           L  +MM + +I LVGEG+V
Subjt:  MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIV

Query:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ
        GRAAFTG+HQWIL++   RD +PPEV+NE+  QF AG+Q
Subjt:  GRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTTTCTTCTTAAAGAGACACTCAAAGCTCTTTGTGGTTCGAATCAATGGTCTTATGCTGTGTTCTGGAAGATCGGCTGCCAAAACCCCAAGCTTCTGATATGGGA
AGAATGCCATTACCAGCACTTGCCCAGCTTTGAGTCTTCTGGTAATGGGAGTTCCAAATTATTACCCCTTGAGGACTGGGAAGGATGTTCATCCATGCAACAGGCGAATC
AAGTGGAGGGCGAACTTTTTTCACTAATGAAACAAATGATGTGTAGTAAACAGATCAGTCTAGTAGGTGAAGGGATTGTCGGGCGAGCTGCGTTTACGGGAAACCATCAG
TGGATTCTGTCGAGCGATTCTACAAGAGATGCCTATCCACCAGAGGTTCTTAATGAGTTGCATCAACAATTTCTTGCTGGGATGCAGGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGTTTCTTCTTAAAGAGACACTCAAAGCTCTTTGTGGTTCGAATCAATGGTCTTATGCTGTGTTCTGGAAGATCGGCTGCCAAAACCCCAAGCTTCTGATATGGGA
AGAATGCCATTACCAGCACTTGCCCAGCTTTGAGTCTTCTGGTAATGGGAGTTCCAAATTATTACCCCTTGAGGACTGGGAAGGATGTTCATCCATGCAACAGGCGAATC
AAGTGGAGGGCGAACTTTTTTCACTAATGAAACAAATGATGTGTAGTAAACAGATCAGTCTAGTAGGTGAAGGGATTGTCGGGCGAGCTGCGTTTACGGGAAACCATCAG
TGGATTCTGTCGAGCGATTCTACAAGAGATGCCTATCCACCAGAGGTTCTTAATGAGTTGCATCAACAATTTCTTGCTGGGATGCAGGTTTGA
Protein sequenceShow/hide protein sequence
MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQ
WILSSDSTRDAYPPEVLNELHQQFLAGMQV