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Carg22715 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22715
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionycf20-like protein
Genome locationCarg_Chr11:4934348..4936298
RNA-Seq ExpressionCarg22715
SyntenyCarg22715
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007572 - Uncharacterised protein family Ycf20


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588267.1 Ycf20-like protein, partial [Cucurbita argyrosperma subsp. sororia]1.1e-5799.17Show/hide
Query:  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLI
        +FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLI
Subjt:  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLI

Query:  NYWKAGVCLGLFVDAFKLGS
        NYWKAGVCLGLFVDAFKLGS
Subjt:  NYWKAGVCLGLFVDAFKLGS

KAG7022186.1 Ycf20-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]5.5e-86100Show/hide
Query:  MYATQRIAVSVMCVQRNRFCDTTSTFQSQTLHIEYSSEQYLNAHSYASTFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAANAL
        MYATQRIAVSVMCVQRNRFCDTTSTFQSQTLHIEYSSEQYLNAHSYASTFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAANAL
Subjt:  MYATQRIAVSVMCVQRNRFCDTTSTFQSQTLHIEYSSEQYLNAHSYASTFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAANAL

Query:  ATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS
        ATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS
Subjt:  ATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS

XP_022924878.1 ycf20-like protein [Cucurbita moschata]4.7e-5379.87Show/hide
Query:  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA-----------------------------ANALATILGQTGDWDVLVAGVVV
        +FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA                             ANALATILGQTGDWDVLVAGVVV
Subjt:  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA-----------------------------ANALATILGQTGDWDVLVAGVVV

Query:  AAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS
        AAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS
Subjt:  AAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS

XP_022973215.1 ycf20-like protein [Cucurbita maxima]4.7e-5379.87Show/hide
Query:  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA-----------------------------ANALATILGQTGDWDVLVAGVVV
        +FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA                             ANALATILGQTGDWDVLVAGVVV
Subjt:  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA-----------------------------ANALATILGQTGDWDVLVAGVVV

Query:  AAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS
        AAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS
Subjt:  AAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS

XP_023520636.1 ycf20-like protein [Cucurbita pepo subsp. pepo]4.7e-5379.87Show/hide
Query:  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA-----------------------------ANALATILGQTGDWDVLVAGVVV
        +FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA                             ANALATILGQTGDWDVLVAGVVV
Subjt:  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA-----------------------------ANALATILGQTGDWDVLVAGVVV

Query:  AAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS
        AAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS
Subjt:  AAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS

TrEMBL top hitse value%identityAlignment
A0A0A0LXR2 Uncharacterized protein6.4e-4871.14Show/hide
Query:  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA-----------------------------ANALATILGQTGDWDVLVAGVVV
        + +TSRH+ +LAFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+                             ANALATILGQTGDWDVLVAGVVV
Subjt:  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA-----------------------------ANALATILGQTGDWDVLVAGVVV

Query:  AAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS
        AAIEWIGILMY+KPPPLLTRRLKS IV++NYWKAGVCLGLFVDAFKLGS
Subjt:  AAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS

A0A1S3B8Z3 ycf20-like protein3.8e-4871.62Show/hide
Query:  FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA-----------------------------ANALATILGQTGDWDVLVAGVVVA
        F+TSRH+ ++AFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+                             ANALATILGQTGDWDVLVAGVVVA
Subjt:  FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA-----------------------------ANALATILGQTGDWDVLVAGVVVA

Query:  AIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS
        AIEWIGILMY+KPPPLLTRRLKS IV++NYWKAGVCLGLFVDAFKLGS
Subjt:  AIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS

A0A5A7T5T0 Ycf20-like protein2.2e-4870.67Show/hide
Query:  STFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA-----------------------------ANALATILGQTGDWDVLVAGVV
        ++F+TSRH+ ++AFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+                             ANALATILGQTGDWDVLVAGVV
Subjt:  STFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA-----------------------------ANALATILGQTGDWDVLVAGVV

Query:  VAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS
        VAAIEWIGILMY+KPPPLLTRRLKS IV++NYWKAGVCLGLFVDAFKLGS
Subjt:  VAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS

A0A6J1EGC6 ycf20-like protein2.3e-5379.87Show/hide
Query:  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA-----------------------------ANALATILGQTGDWDVLVAGVVV
        +FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA                             ANALATILGQTGDWDVLVAGVVV
Subjt:  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA-----------------------------ANALATILGQTGDWDVLVAGVVV

Query:  AAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS
        AAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS
Subjt:  AAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS

A0A6J1ICF7 ycf20-like protein2.3e-5379.87Show/hide
Query:  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA-----------------------------ANALATILGQTGDWDVLVAGVVV
        +FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA                             ANALATILGQTGDWDVLVAGVVV
Subjt:  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA-----------------------------ANALATILGQTGDWDVLVAGVVV

Query:  AAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS
        AAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS
Subjt:  AAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS

SwissProt top hitse value%identityAlignment
O80813 Ycf20-like protein9.3e-2849.67Show/hide
Query:  TFRTSRHLQQLAFALDTGGVSSNGGGDNLD-DGNESNLGRTRLGRLVSA-----------------------------ANALATILGQTGDWDVLVAGVV
        +F+  R  +++AFALDTG       G+  + +G+ + LG TRLGR+  A                             ANALATILGQTGDWDVLVAG+V
Subjt:  TFRTSRHLQQLAFALDTGGVSSNGGGDNLD-DGNESNLGRTRLGRLVSA-----------------------------ANALATILGQTGDWDVLVAGVV

Query:  VAAIEWIGILMYKKP-PPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS
        VAAIE IG+LMYKKP   + + +L+S +V +N+WKAGVCLGLFVDAFKLGS
Subjt:  VAAIEWIGILMYKKP-PPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS

P48409 Uncharacterized protein ycf201.0e-0536Show/hide
Query:  VSAANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS
        + ++N L TI  QTGDW + +   ++A  E I  + Y +    + +  K++I   N +K G+  GL++DAFKLGS
Subjt:  VSAANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS

P51214 Uncharacterized protein ycf203.7e-0845.83Show/hide
Query:  ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS
        +  L+TI GQTGDW ++ A ++VAAIE +  ++Y        R     I L+N  K G+  GLFVDAFKLGS
Subjt:  ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS

Q1XDS2 Uncharacterized protein ycf208.2e-0844.44Show/hide
Query:  ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS
        +  L+TI GQTGDW ++ A ++VAA E    ++Y        ++L   I L N +K G+  GLFVDAFKLGS
Subjt:  ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS

Q9MUL5 Uncharacterized protein ycf201.6e-1156.58Show/hide
Query:  ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKK----PPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS
        A  LAT+ GQTGDWDVLVAG++VA IE +G  MY K       +      SLI  INY K G+  GLFVDAFKLGS
Subjt:  ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKK----PPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS

Arabidopsis top hitse value%identityAlignment
AT1G65420.1 Protein of unknown function (DUF565)6.6e-2949.67Show/hide
Query:  TFRTSRHLQQLAFALDTGGVSSNGGGDNLD-DGNESNLGRTRLGRLVSA-----------------------------ANALATILGQTGDWDVLVAGVV
        +F+  R  +++AFALDTG       G+  + +G+ + LG TRLGR+  A                             ANALATILGQTGDWDVLVAG+V
Subjt:  TFRTSRHLQQLAFALDTGGVSSNGGGDNLD-DGNESNLGRTRLGRLVSA-----------------------------ANALATILGQTGDWDVLVAGVV

Query:  VAAIEWIGILMYKKP-PPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS
        VAAIE IG+LMYKKP   + + +L+S +V +N+WKAGVCLGLFVDAFKLGS
Subjt:  VAAIEWIGILMYKKP-PPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS

AT3G56830.1 Protein of unknown function (DUF565)2.4e-1552.86Show/hide
Query:  AANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFK
        +A A +T +GQTGDWDVL AG+ V  +E IG LMY+   PL+  +++S I + NYWK G+ LGLF+D+FK
Subjt:  AANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFK

AT3G56830.2 Protein of unknown function (DUF565)2.4e-1552.86Show/hide
Query:  AANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFK
        +A A +T +GQTGDWDVL AG+ V  +E IG LMY+   PL+  +++S I + NYWK G+ LGLF+D+FK
Subjt:  AANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFK

AT3G56830.3 Protein of unknown function (DUF565)2.4e-1552.86Show/hide
Query:  AANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFK
        +A A +T +GQTGDWDVL AG+ V  +E IG LMY+   PL+  +++S I + NYWK G+ LGLF+D+FK
Subjt:  AANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGCAACACAAAGAATCGCTGTGTCAGTGATGTGTGTGCAACGAAACAGATTTTGTGACACAACTTCTACCTTCCAATCGCAAACCTTGCATATAGAATACTCCTC
CGAACAATACTTGAATGCTCACAGTTATGCGTCTACTTTCCGGACGAGTAGACATCTACAACAATTAGCCTTTGCATTAGACACAGGTGGGGTATCTAGTAACGGTGGGG
GAGACAACCTTGATGATGGTAATGAGTCGAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGCGCAGCCAATGCTCTTGCTACAATTCTTGGGCAGACGGGTGACTGG
GATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATTGAATGGATTGGTATACTCATGTACAAGAAGCCACCACCTCTATTAACTAGGAGGTTGAAATCATTAATAGTACT
GATAAACTATTGGAAAGCCGGCGTATGCTTAGGCCTCTTCGTCGATGCGTTCAAATTGGGGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATGCAACACAAAGAATCGCTGTGTCAGTGATGTGTGTGCAACGAAACAGATTTTGTGACACAACTTCTACCTTCCAATCGCAAACCTTGCATATAGAATACTCCTC
CGAACAATACTTGAATGCTCACAGTTATGCGTCTACTTTCCGGACGAGTAGACATCTACAACAATTAGCCTTTGCATTAGACACAGGTGGGGTATCTAGTAACGGTGGGG
GAGACAACCTTGATGATGGTAATGAGTCGAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGCGCAGCCAATGCTCTTGCTACAATTCTTGGGCAGACGGGTGACTGG
GATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATTGAATGGATTGGTATACTCATGTACAAGAAGCCACCACCTCTATTAACTAGGAGGTTGAAATCATTAATAGTACT
GATAAACTATTGGAAAGCCGGCGTATGCTTAGGCCTCTTCGTCGATGCGTTCAAATTGGGGAGTTGA
Protein sequenceShow/hide protein sequence
MYATQRIAVSVMCVQRNRFCDTTSTFQSQTLHIEYSSEQYLNAHSYASTFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAANALATILGQTGDW
DVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS