; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg22719 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22719
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionProtein TIC 20
Genome locationCarg_Chr11:4975401..4975877
RNA-Seq ExpressionCarg22719
SyntenyCarg22719
Gene Ontology termsGO:0009706 - chloroplast inner membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR005691 - Chloroplast protein import component Tic20


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7022190.1 Protein TIC 20-II, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-83100Show/hide
Query:  MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL
        MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL
Subjt:  MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL

Query:  IQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI
        IQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI
Subjt:  IQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI

XP_023005732.1 protein TIC 20-II, chloroplastic-like isoform X1 [Cucurbita maxima]1.7e-8198.1Show/hide
Query:  MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL
        MSYNPTPATDRLISAVAY+LPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL
Subjt:  MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL

Query:  IQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI
        IQRILSPG GGLGFQIMVWGHNGLFLFSVLCFV+SLASCLLGRTPHLPLVADAAGRQI
Subjt:  IQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI

XP_023005745.1 protein TIC 20-II, chloroplastic-like isoform X2 [Cucurbita maxima]1.7e-8198.1Show/hide
Query:  MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL
        MSYNPTPATDRLISAVAY+LPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL
Subjt:  MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL

Query:  IQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI
        IQRILSPG GGLGFQIMVWGHNGLFLFSVLCFV+SLASCLLGRTPHLPLVADAAGRQI
Subjt:  IQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI

XP_023520670.1 protein TIC 20-II, chloroplastic-like [Cucurbita pepo subsp. pepo]4.3e-8096.84Show/hide
Query:  MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL
        MSYNPTPATDRLISAVAY+LPFFNSLQYGR LFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL
Subjt:  MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL

Query:  IQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI
        IQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFV+ LASCLLGRTPHL LVADAAGRQI
Subjt:  IQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI

XP_038879337.1 protein TIC 20-II, chloroplastic [Benincasa hispida]3.2e-7588.61Show/hide
Query:  MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL
        MSYNPTPATDR+ISAVAY+LPFFNSLQYGRFLF QYP LG AFEP+LPILGLYRSIPH+SF+AFFALYLG+VRNP+F+ YVRFNSMQAVTLDVLL VPLL
Subjt:  MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL

Query:  IQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI
        IQRILSPG GGLGFQIMVWGHNGLF+FSVLCFV+SL SCLLGRTPHLP+VADAAGRQI
Subjt:  IQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI

TrEMBL top hitse value%identityAlignment
A0A0A0LXS7 Protein TIC 202.2e-7487.34Show/hide
Query:  MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL
        MSYNPTPATDRLISAVAY+LPFFNSLQYGRFLF QYP LG AFEP+LPILGLYRSIPHSSF+AFFALYLGVVRNP+FN YVRFNSMQAVTLDVLL VPLL
Subjt:  MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL

Query:  IQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI
        IQRILSPG  G+GF+IMVW HNGLF+FSVLCF++S+ SCLLGRTPHLP+VADAAGRQI
Subjt:  IQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI

A0A1S3B9C6 Protein TIC 202.9e-7486.71Show/hide
Query:  MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL
        MSYNPTPATDRLISAV+Y+LPFFNSLQYGRFLF QYP LG AFEP+LPILGLYRSIPHSSF+AFFALYLGVVRNP+F+ YVRFNSMQAVTLDVLL VPLL
Subjt:  MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL

Query:  IQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI
        IQRILSPG GG+GF+IMVW HNGLF+FSVLCF++S+ SCLLGRTPHLP+VADAAGRQI
Subjt:  IQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI

A0A5D3E499 Protein TIC 202.9e-7486.71Show/hide
Query:  MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL
        MSYNPTPATDRLISAV+Y+LPFFNSLQYGRFLF QYP LG AFEP+LPILGLYRSIPHSSF+AFFALYLGVVRNP+F+ YVRFNSMQAVTLDVLL VPLL
Subjt:  MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL

Query:  IQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI
        IQRILSPG GG+GF+IMVW HNGLF+FSVLCF++S+ SCLLGRTPHLP+VADAAGRQI
Subjt:  IQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI

A0A6J1KY86 Protein TIC 208.4e-8298.1Show/hide
Query:  MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL
        MSYNPTPATDRLISAVAY+LPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL
Subjt:  MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL

Query:  IQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI
        IQRILSPG GGLGFQIMVWGHNGLFLFSVLCFV+SLASCLLGRTPHLPLVADAAGRQI
Subjt:  IQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI

A0A6J1KY91 Protein TIC 208.4e-8298.1Show/hide
Query:  MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL
        MSYNPTPATDRLISAVAY+LPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL
Subjt:  MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLL

Query:  IQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI
        IQRILSPG GGLGFQIMVWGHNGLFLFSVLCFV+SLASCLLGRTPHLPLVADAAGRQI
Subjt:  IQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI

SwissProt top hitse value%identityAlignment
O82251 Protein TIC 20-II, chloroplastic2.7e-6170.25Show/hide
Query:  SYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLI
        SY PTPAT+R+IS  +Y+LPFFNSLQYGRFLF QYP LGL FEPI PIL LYRS+P++SF+AFF LYLGVVRN +F+RYVRFN+MQAVTLDVLLAVP+L+
Subjt:  SYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLI

Query:  QRILSPGP-GGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI
         RIL PG  GG G + M+WGH G+F+FS +CFV+ + S LLG+TP++P VADAAGRQ+
Subjt:  QRILSPGP-GGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI

P73387 Tic20 family protein2.1e-2135.76Show/hide
Query:  DRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAV-PLLIQRILSPG
        DR  SA+ Y +P  ++  +G FL  Q+PVL + + PI+P+L  Y   P +SFI F  L++ VVRN N + ++RFN+MQA+ + +LL++  L++  ++ P 
Subjt:  DRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAV-PLLIQRILSPG

Query:  PG-GLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI
         G GL  + +   +N  FL ++ C    +   +LGR   +P ++DAA  Q+
Subjt:  PG-GLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI

Q9FM67 Protein TIC 20-v, chloroplastic9.7e-3546.36Show/hide
Query:  ATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSP
        A+DR+ISAV Y  PFF+ +QYG+F+ TQY    +  +P+ P +  ++S P + F+ F  LY  VVRNPNF+RYVRFN+MQA+ LDVLL  P L++R  +P
Subjt:  ATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSP

Query:  GPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI
           G G  +++   + +FLF ++  ++  ++CL G TP LPLVA+AA RQ+
Subjt:  GPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI

Arabidopsis top hitse value%identityAlignment
AT2G47840.1 Uncharacterised conserved protein ycf601.9e-6270.25Show/hide
Query:  SYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLI
        SY PTPAT+R+IS  +Y+LPFFNSLQYGRFLF QYP LGL FEPI PIL LYRS+P++SF+AFF LYLGVVRN +F+RYVRFN+MQAVTLDVLLAVP+L+
Subjt:  SYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLI

Query:  QRILSPGP-GGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI
         RIL PG  GG G + M+WGH G+F+FS +CFV+ + S LLG+TP++P VADAAGRQ+
Subjt:  QRILSPGP-GGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI

AT5G55710.1 FUNCTIONS IN: molecular_function unknown6.9e-3646.36Show/hide
Query:  ATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSP
        A+DR+ISAV Y  PFF+ +QYG+F+ TQY    +  +P+ P +  ++S P + F+ F  LY  VVRNPNF+RYVRFN+MQA+ LDVLL  P L++R  +P
Subjt:  ATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSP

Query:  GPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI
           G G  +++   + +FLF ++  ++  ++CL G TP LPLVA+AA RQ+
Subjt:  GPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTACAACCCTACTCCGGCCACCGACCGCCTCATCTCCGCCGTCGCCTACAGTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCACCCAGTACCC
GGTCCTCGGCCTCGCCTTCGAACCGATTCTCCCTATTCTAGGGCTTTATCGCTCGATCCCACACTCTAGCTTCATCGCCTTCTTTGCGCTCTACTTGGGCGTTGTCCGGA
ACCCTAACTTCAACCGCTACGTGAGGTTCAATTCAATGCAGGCGGTGACCCTGGACGTGCTGCTGGCGGTGCCGTTGTTGATACAGAGGATTCTGAGTCCCGGTCCGGGC
GGATTAGGGTTCCAGATTATGGTTTGGGGCCATAATGGATTGTTTCTTTTCAGTGTTTTGTGTTTTGTTCACAGTCTCGCTTCTTGCCTTCTGGGTCGGACCCCTCACTT
GCCGCTTGTTGCTGATGCTGCTGGCAGGCAGATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCTACAACCCTACTCCGGCCACCGACCGCCTCATCTCCGCCGTCGCCTACAGTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCACCCAGTACCC
GGTCCTCGGCCTCGCCTTCGAACCGATTCTCCCTATTCTAGGGCTTTATCGCTCGATCCCACACTCTAGCTTCATCGCCTTCTTTGCGCTCTACTTGGGCGTTGTCCGGA
ACCCTAACTTCAACCGCTACGTGAGGTTCAATTCAATGCAGGCGGTGACCCTGGACGTGCTGCTGGCGGTGCCGTTGTTGATACAGAGGATTCTGAGTCCCGGTCCGGGC
GGATTAGGGTTCCAGATTATGGTTTGGGGCCATAATGGATTGTTTCTTTTCAGTGTTTTGTGTTTTGTTCACAGTCTCGCTTCTTGCCTTCTGGGTCGGACCCCTCACTT
GCCGCTTGTTGCTGATGCTGCTGGCAGGCAGATTTAG
Protein sequenceShow/hide protein sequence
MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPG
GLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI