CuGenDBv2

Gene ID	Carg22734
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	pre-mRNA-splicing factor SPF27 homolog
Genome location	Carg_Chr18:247300..248141
RNA-Seq Expression	Carg22734
Synteny	Carg22734
Gene Ontology terms	GO:0002758 - innate immune response-activating signal transduction (biological process) GO:0006397 - mRNA processing (biological process) GO:0008380 - RNA splicing (biological process) GO:0042742 - defense response to bacterium (biological process) GO:0050832 - defense response to fungus (biological process) GO:0000974 - Prp19 complex (cellular component) GO:0071013 - catalytic step 2 spliceosome (cellular component)
InterPro domains	IPR008409 - Pre-mRNA-splicing factor SPF27

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6572957.1 Pre-mRNA-splicing factor SPF27-like protein, partial [Cucurbita argyrosperma subsp. sororia]

1.6e-27

100

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Query:  TVRLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK
        TVRLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK
Subjt:  TVRLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK

KAG6584331.1 Pre-mRNA-splicing factor SPF27-like protein, partial [Cucurbita argyrosperma subsp. sororia]

5.0e-18

76.81

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Query:  RLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK
        R+Q+LAQEQNEK+EKVNRERKFHQQNAA ELH LSTQWKELC+KN+EI+V  SQIE QIQ+ R EA +K
Subjt:  RLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK

KAG7012138.1 Pre-mRNA-splicing factor SPF27-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.2e-45

100

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Query:  MYMSFLNVVSKKLHLTNLTIYDCYLYCLVTVRLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK
        MYMSFLNVVSKKLHLTNLTIYDCYLYCLVTVRLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK
Subjt:  MYMSFLNVVSKKLHLTNLTIYDCYLYCLVTVRLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK

XP_022923949.1 pre-mRNA-splicing factor SPF27 homolog [Cucurbita moschata]

5.0e-18

76.81

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Query:  RLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK
        R+Q+LAQEQNEK+EKVNRERKFHQQNAA ELH LSTQWKELC+KN+EI+V  SQIE QIQ+ R EA +K
Subjt:  RLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK

XP_023518986.1 pre-mRNA-splicing factor SPF27 homolog [Cucurbita pepo subsp. pepo]

5.0e-18

76.81

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Query:  RLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK
        R+Q+LAQEQNEK+EKVNRERKFHQQNAA ELH LSTQWKELC+KN+EI+V  SQIE QIQ+ R EA +K
Subjt:  RLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LQG2 Uncharacterized protein

4.1e-18

75.36

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Query:  RLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK
        R+Q+LAQEQNEK+EKVNRERKFHQQNAA ELH LSTQWKELC+KN+EI+V   Q+E QIQ+ RREA +K
Subjt:  RLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK

A0A1S3CHH7 pre-mRNA-splicing factor SPF27 homolog

4.1e-18

75.36

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Query:  RLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK
        R+Q+LAQEQNEK+EKVNRERKFHQQNAA ELH LSTQWKELC+KN+EI+V   Q+E QIQ+ RREA +K
Subjt:  RLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK

A0A6J1CB04 pre-mRNA-splicing factor SPF27 homolog

3.2e-18

78.79

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Query:  RLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREA
        R+Q+LAQEQNEK+EKVNRERKFHQQNAA ELH LSTQWK+LC KN+EI+V  SQIE QIQ+ RREA
Subjt:  RLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREA

A0A6J1EDE4 pre-mRNA-splicing factor SPF27 homolog

2.4e-18

76.81

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Query:  RLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK
        R+Q+LAQEQNEK+EKVNRERKFHQQNAA ELH LSTQWKELC+KN+EI+V  SQIE QIQ+ R EA +K
Subjt:  RLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK

A0A6J1KLZ4 pre-mRNA-splicing factor SPF27 homolog

2.4e-18

76.81

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Query:  RLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK
        R+Q+LAQEQNEK+EKVNRERKFHQQNAA ELH LSTQWKELC+KN+EI+V  SQIE QIQ+ R EA +K
Subjt:  RLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK

SwissProt top hits

e value

%identity

Alignment

Q949S9 Pre-mRNA-splicing factor SPF27 homolog

1.9e-12

52.17

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Query:  RLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK
        R+Q+LAQEQNE++EKVNRERK+HQQ  + EL+ LS +W++LC KN+EI+   + +E QI   ++EA ++
Subjt:  RLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK

Arabidopsis top hits

e value

%identity

Alignment

AT3G18165.1 modifier of snc1,4

1.4e-13

52.17

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Query:  RLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK
        R+Q+LAQEQNE++EKVNRERK+HQQ  + EL+ LS +W++LC KN+EI+   + +E QI   ++EA ++
Subjt:  RLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK

Sequences

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CDS sequence

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mRNA sequence

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ATGTACATGTCATTTCTTAATGTAGTTAGCAAGAAACTACATCTGACCAACTTGACCATATATGATTGTTACTTATATTGTCTTGTTACTGTCAGATTGCAACAATTAGC
TCAAGAACAGAATGAGAAGATGGAAAAAGTAAACCGCGAAAGAAAATTCCATCAACAAAACGCTGCATCTGAGCTTCATGTTTTGTCCACACAATGGAAGGAACTTTGCC
AGAAAAATATTGAAATCCGAGTTGTATCCTCTCAAATAGAGGATCAAATCCAGGATCGAAGGAGAGAGGCTGAAAAAAAGTAATCTTGCATTTTTCTATTTGACACTTTT
ACACACATGTTTGGAATATTTAGAACCGATCTGCGGGTGGGTTATGATTTCAGGTACATGATTTCAGATATGTACAGCAAGAGAAAATACAAAGAATACCAACCGTACAT
TTTTAAAGCTCTGCCTAATGAGTTATATATATGGTTCAATTTACTATATATAATTTTAACGTATAGTATATAACTATTTAAATAGTGAATGGGAGCATCCTAACTATGGT
TTATGCTGCTCAAAACTAGAGACTGCGGACATCTTTTGTTACTCTTAGCATATGCCGATATGGAAGATGAGTTCGGTTTATGGGAGAAGATTCAGTTGCTTTTGCTAACC
ACGTTATTGGGTAACTCTCTGATTTTTATTTACATAATGTTTTGTGTATAAATTATTGAACTACCAAACTGTCAATCAAATGGATAATATTTG

Protein sequence

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MYMSFLNVVSKKLHLTNLTIYDCYLYCLVTVRLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKK

Carg22734 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome