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Carg22945 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22945
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor RADIALIS-like
Genome locationCarg_Chr02:1758392..1759520
RNA-Seq ExpressionCarg22945
SyntenyCarg22945
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605078.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia]7.4e-4999.03Show/hide
Query:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRNM
        MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPR SYDNINDQEKRMRNM
Subjt:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRNM

Query:  KLG
        KLG
Subjt:  KLG

KAG7035087.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-49100Show/hide
Query:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRNM
        MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRNM
Subjt:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRNM

Query:  KLG
        KLG
Subjt:  KLG

XP_022946976.1 transcription factor RADIALIS-like [Cucurbita moschata]7.6e-4694.17Show/hide
Query:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRNM
        MASISSSH S+SWSPNQNKAFE ALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTS+DNIN QE+RMRNM
Subjt:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRNM

Query:  KLG
        KLG
Subjt:  KLG

XP_023515007.1 transcription factor RADIALIS-like [Cucurbita pepo subsp. pepo]7.1e-4493.14Show/hide
Query:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRNM
        MASISSSH S+SWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKT DEVKRHFELLVEDVKHIESGLVPFPNYT  SSSAPRTS+DNINDQE+RMRNM
Subjt:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRNM

Query:  KL
        KL
Subjt:  KL

XP_038902123.1 protein RADIALIS-like 2 [Benincasa hispida]6.1e-3579.61Show/hide
Query:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAV-GDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRN
        MASISSSH S SW+PNQNKAFERALAVFDKDTPDRWLNVA AV G KT DEVKRHF+LLVEDVKHIESG VPFPNYTS+S+ A  +   N+NDQE+RMRN
Subjt:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAV-GDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRN

Query:  MKL
        +KL
Subjt:  MKL

TrEMBL top hitse value%identityAlignment
A0A0A0LL58 MYB transcription factor MYB1421.1e-3484.47Show/hide
Query:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAV-GDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRN
        MASISSS  SSSW+PNQNKAFERALAVFDKDTPDRWLNVAKAV G KT DEVKRHF+ LVEDVKHIESG VPFP YTSSSSS P TS  NI DQE+RMRN
Subjt:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAV-GDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRN

Query:  MKL
        MKL
Subjt:  MKL

A0A6J1FXX9 protein RADIALIS-like 25.5e-3479.61Show/hide
Query:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAV-GDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRN
        MAS++SSH SSSW+P QNKAFERALAVFDKDTPDRWLNVAKAV G KT DEVK HF+LLVEDVKHIESG VPFPNY SS++SA  TS  NINDQE+RMR+
Subjt:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAV-GDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRN

Query:  MKL
        +KL
Subjt:  MKL

A0A6J1G543 transcription factor RADIALIS-like3.7e-4694.17Show/hide
Query:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRNM
        MASISSSH S+SWSPNQNKAFE ALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTS+DNIN QE+RMRNM
Subjt:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRNM

Query:  KLG
        KLG
Subjt:  KLG

A0A6J1JBS7 protein RADIALIS-like 27.2e-3479.61Show/hide
Query:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAV-GDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRN
        MAS+SSSH SSSW+P +NKAFERALAVFDKDTPDRWLNVAKAV G KT DEVK HF+LLVEDVKHIE G VPFPNY SS++SA  TS  NINDQE+RMRN
Subjt:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAV-GDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRN

Query:  MKL
        +KL
Subjt:  MKL

A0A6J1L657 protein RADIALIS-like 12.5e-3492.68Show/hide
Query:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSA
        MASISSS  S+SWSPNQNKAFERALA+FDKDTPDRWLNVAKAVGDKT DEVKRHFELLVEDVKHIESGLVPFPNYTSSSSS+
Subjt:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSA

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 15.9e-2558.25Show/hide
Query:  MASIS-SSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRN
        MAS S SS  S SW+  QNKAFE+ALA +D+DTP+RW NVAK VG KT +EVKRH+ELLV+D+  IE+G VPFPNY +S       +   ++ +EKRMRN
Subjt:  MASIS-SSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRN

Query:  MKL
        M+L
Subjt:  MKL

Q1A173 Protein RADIALIS-like 62.1e-2257.28Show/hide
Query:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNIND-QEKRMRN
        MAS S S   S W+ +QNK FERALAV+DKDTPDRW NVAKAVG KTV+EVKRH+++LVED+ +IE+G VP PNY +  S++      +IND   ++M+N
Subjt:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNIND-QEKRMRN

Query:  MKL
        +K+
Subjt:  MKL

Q58FS3 Transcription factor RADIALIS5.9e-2558Show/hide
Query:  ISSSHGSS-SWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRNMKL
        ++S+ GS   WS  +NKAFERALAV+DKDTPDRW NVA+AV  +T +EVK+H+E+LVED+K+IESG VPFPNY        RT+  N+   EKR RN+K+
Subjt:  ISSSHGSS-SWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRNMKL

Q8GW75 Protein RADIALIS-like 51.4e-2153.92Show/hide
Query:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRNM
        MAS SS   SSSW+  QNK FERALAV+DKDTPDRW NVAKAVG K+ +EVKRH+++LVED+ +IE  LVP P Y +    +     D+ +   + M+NM
Subjt:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRNM

Query:  KL
        ++
Subjt:  KL

Q9SIJ5 Protein RADIALIS-like 22.0e-2559.22Show/hide
Query:  MASIS-SSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRN
        MAS S SS+GS SW+  QNKAFERALAV+D+DTPDRW NVA+AVG KT +E KR ++LLV D++ IE+G VPFP+Y +++ ++ R     + D+EKRMR+
Subjt:  MASIS-SSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRN

Query:  MKL
        MKL
Subjt:  MKL

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 59.7e-2353.92Show/hide
Query:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRNM
        MAS SS   SSSW+  QNK FERALAV+DKDTPDRW NVAKAVG K+ +EVKRH+++LVED+ +IE  LVP P Y +    +     D+ +   + M+NM
Subjt:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRNM

Query:  KL
        ++
Subjt:  KL

AT1G75250.1 RAD-like 62.2e-2259.38Show/hide
Query:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKR
        MAS S S   S W+ +QNK FERALAV+DKDTPDRW NVAKAVG KTV+EVKRH+++LVED+ +IE+G VP PNY +  S++      +IND + R
Subjt:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKR

AT1G75250.2 RAD-like 61.5e-2357.28Show/hide
Query:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNIND-QEKRMRN
        MAS S S   S W+ +QNK FERALAV+DKDTPDRW NVAKAVG KTV+EVKRH+++LVED+ +IE+G VP PNY +  S++      +IND   ++M+N
Subjt:  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNIND-QEKRMRN

Query:  MKL
        +K+
Subjt:  MKL

AT2G21650.1 Homeodomain-like superfamily protein1.4e-2659.22Show/hide
Query:  MASIS-SSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRN
        MAS S SS+GS SW+  QNKAFERALAV+D+DTPDRW NVA+AVG KT +E KR ++LLV D++ IE+G VPFP+Y +++ ++ R     + D+EKRMR+
Subjt:  MASIS-SSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRN

Query:  MKL
        MKL
Subjt:  MKL

AT4G39250.1 RAD-like 14.2e-2658.25Show/hide
Query:  MASIS-SSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRN
        MAS S SS  S SW+  QNKAFE+ALA +D+DTP+RW NVAK VG KT +EVKRH+ELLV+D+  IE+G VPFPNY +S       +   ++ +EKRMRN
Subjt:  MASIS-SSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRN

Query:  MKL
        M+L
Subjt:  MKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATCTCCTCCTCTCATGGCTCTAGCTCATGGTCTCCCAACCAAAACAAAGCCTTTGAAAGAGCCTTGGCTGTCTTTGACAAGGACACGCCCGATCGCTGGCT
CAATGTCGCCAAGGCTGTTGGCGACAAGACTGTCGATGAAGTCAAGAGACATTTCGAGCTTCTCGTTGAGGATGTCAAGCACATTGAATCTGGCCTTGTTCCATTTCCTA
ATTACACCTCCTCCTCCTCTTCCGCTCCTCGAACTTCCTATGATAACATCAATGATCAAGAAAAAAGGATGAGAAATATGAAGCTCGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCATCTCCTCCTCTCATGGCTCTAGCTCATGGTCTCCCAACCAAAACAAAGCCTTTGAAAGAGCCTTGGCTGTCTTTGACAAGGACACGCCCGATCGCTGGCT
CAATGTCGCCAAGGCTGTTGGCGACAAGACTGTCGATGAAGTCAAGAGACATTTCGAGCTTCTCGTTGAGGATGTCAAGCACATTGAATCTGGCCTTGTTCCATTTCCTA
ATTACACCTCCTCCTCCTCTTCCGCTCCTCGAACTTCCTATGATAACATCAATGATCAAGAAAAAAGGATGAGAAATATGAAGCTCGGCTAAAATGGTTGAAATTGGAAG
CAACTTGGAAGGGGGTGGGACGAGGAAGAACAAAGATTGGATGGCTATTTGCAAGTCTTCAAGAATCAAAACCTGCAATTCTATGTGATTATTTGTTTGTTTGTTTTTTT
TTTTCTT
Protein sequenceShow/hide protein sequence
MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKRMRNMKLG