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Carg22954 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22954
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionmediator of RNA polymerase II transcription subunit 32-like
Genome locationCarg_Chr02:1821497..1824107
RNA-Seq ExpressionCarg22954
SyntenyCarg22954
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009631 - cold acclimation (biological process)
GO:0010150 - leaf senescence (biological process)
GO:0048364 - root development (biological process)
GO:0016592 - mediator complex (cellular component)
InterPro domainsIPR033244 - Mediator of RNA polymerase II transcription subunit 32


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605089.1 Mediator of RNA polymerase II transcription subunit 32, partial [Cucurbita argyrosperma subsp. sororia]1.8e-8388.24Show/hide
Query:  VAGRSVEDLQLVGAEDLELVGAEDLELVGAEDLWFASTPF---------LFRYSDMDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFK
        VAGRSVEDLQLVGAEDL+LVGAEDL ++      F+  P          L RYSDMDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFK
Subjt:  VAGRSVEDLQLVGAEDLELVGAEDLELVGAEDLWFASTPF---------LFRYSDMDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFK

Query:  QKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAAAATSSGLPPISAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHSSAPFDARFSE
        QKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAAAATSSGLPPISAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHSSAPFDARFSE
Subjt:  QKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAAAATSSGLPPISAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHSSAPFDARFSE

Query:  DTTQ
        DTTQ
Subjt:  DTTQ

KAG7035096.1 Mediator of RNA polymerase II transcription subunit 32, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-97100Show/hide
Query:  MVAGRSVEDLQLVGAEDLELVGAEDLELVGAEDLWFASTPFLFRYSDMDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMV
        MVAGRSVEDLQLVGAEDLELVGAEDLELVGAEDLWFASTPFLFRYSDMDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMV
Subjt:  MVAGRSVEDLQLVGAEDLELVGAEDLELVGAEDLWFASTPFLFRYSDMDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMV

Query:  ACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAAAATSSGLPPISAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHSSAPFDARFSEDTTQ
        ACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAAAATSSGLPPISAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHSSAPFDARFSEDTTQ
Subjt:  ACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAAAATSSGLPPISAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHSSAPFDARFSEDTTQ

XP_022948111.1 mediator of RNA polymerase II transcription subunit 32-like [Cucurbita moschata]1.1e-6999.33Show/hide
Query:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAAAATSSGLPPI
        MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAAAATSS LPPI
Subjt:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAAAATSSGLPPI

Query:  SAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHSSAPFDARFSEDTTQ
        SAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHSSAPFDARFSEDTTQ
Subjt:  SAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHSSAPFDARFSEDTTQ

XP_023007274.1 mediator of RNA polymerase II transcription subunit 32-like [Cucurbita maxima]2.8e-6594.16Show/hide
Query:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQA-AAATSSGLPP
        MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQA AAAT++GLP 
Subjt:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQA-AAATSSGLPP

Query:  ISAIRLEQMSKAVRWLVIELQHGSG----AAASASAHSHSSAPFDARFSEDTTQ
        ISAIRLEQMSKAVRWLVIELQHGSG    A+ASASAHSHSSAPFDARFSEDTTQ
Subjt:  ISAIRLEQMSKAVRWLVIELQHGSG----AAASASAHSHSSAPFDARFSEDTTQ

XP_023534665.1 mediator of RNA polymerase II transcription subunit 32-like [Cucurbita pepo subsp. pepo]8.5e-7099.33Show/hide
Query:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAAAATSSGLPPI
        MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAAAATSSGLPPI
Subjt:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAAAATSSGLPPI

Query:  SAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHSSAPFDARFSEDTTQ
        SAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHS APFDARFSEDTTQ
Subjt:  SAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHSSAPFDARFSEDTTQ

TrEMBL top hitse value%identityAlignment
A0A5A7TWZ7 Mediator of RNA polymerase II transcription subunit 322.2e-6388.74Show/hide
Query:  SDMDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAAAATSSGLP
        SDMDSLVDSLNNAYQEFVAGAA+VLEANE SGAQKTAATDAALENFKQKWELF VACDQAEEFVESVKQRIGSECL+DEATGSL+ KSGQ+    ++GLP
Subjt:  SDMDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAAAATSSGLP

Query:  PISAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHSSAPFDARFSEDTTQ
        PISA+RLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARF+ED TQ
Subjt:  PISAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHSSAPFDARFSEDTTQ

A0A5D3CQ46 Mediator of RNA polymerase II transcription subunit 325.7e-6489.4Show/hide
Query:  SDMDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAAAATSSGLP
        SDMDSLVDSLNNAYQEFVAGAA+VLEANE SGAQKTAATDAALENFKQKWELF VACDQAEEFVESVKQRIGSECL+DEATGSL+ KSGQ+    ++GLP
Subjt:  SDMDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAAAATSSGLP

Query:  PISAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHSSAPFDARFSEDTTQ
        PISA+RLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARF+EDTTQ
Subjt:  PISAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHSSAPFDARFSEDTTQ

A0A6J1G8D0 mediator of RNA polymerase II transcription subunit 32-like5.3e-7099.33Show/hide
Query:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAAAATSSGLPPI
        MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAAAATSS LPPI
Subjt:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAAAATSSGLPPI

Query:  SAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHSSAPFDARFSEDTTQ
        SAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHSSAPFDARFSEDTTQ
Subjt:  SAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHSSAPFDARFSEDTTQ

A0A6J1JEJ1 mediator of RNA polymerase II transcription subunit 32-like isoform X19.8e-6489.1Show/hide
Query:  LFRYSDMDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAAAATS
        L   SDMDSLVDSLNNAYQEFV+GAA+VLEANE SGAQKTAATDAALENFKQKWELF VACDQAEEFVESVKQRIGSECL+DEATGSL+ KSGQ AAAT+
Subjt:  LFRYSDMDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAAAATS

Query:  SGLPPISAIRLEQMSKAVRWLVIELQHGSG-AAASASAHSHSSAPFDARFSEDTTQ
        +GLPPISAIRLEQMSKAVRWLVIELQHGSG AAASASAHSH SAPFDARF+ED TQ
Subjt:  SGLPPISAIRLEQMSKAVRWLVIELQHGSG-AAASASAHSHSSAPFDARFSEDTTQ

A0A6J1L2I3 mediator of RNA polymerase II transcription subunit 32-like1.4e-6594.16Show/hide
Query:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQA-AAATSSGLPP
        MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQA AAAT++GLP 
Subjt:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQA-AAATSSGLPP

Query:  ISAIRLEQMSKAVRWLVIELQHGSG----AAASASAHSHSSAPFDARFSEDTTQ
        ISAIRLEQMSKAVRWLVIELQHGSG    A+ASASAHSHSSAPFDARFSEDTTQ
Subjt:  ISAIRLEQMSKAVRWLVIELQHGSG----AAASASAHSHSSAPFDARFSEDTTQ

SwissProt top hitse value%identityAlignment
Q84VW5 Mediator of RNA polymerase II transcription subunit 324.4e-4567.32Show/hide
Query:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATG-SLSSKSGQAAAA---TSSG
        MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELF VACDQAEEFVESVKQRIGSECL+DEATG + ++  GQA AA    ++ 
Subjt:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATG-SLSSKSGQAAAA---TSSG

Query:  LPPISAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHSSAPFDARFSEDTTQ
        LPPISA+RLEQMS+AVRWLV+ELQ GSG  A  S HS SS  FD+RFSED+TQ
Subjt:  LPPISAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHSSAPFDARFSEDTTQ

Arabidopsis top hitse value%identityAlignment
AT1G11760.1 MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).3.1e-4667.32Show/hide
Query:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATG-SLSSKSGQAAAA---TSSG
        MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELF VACDQAEEFVESVKQRIGSECL+DEATG + ++  GQA AA    ++ 
Subjt:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATG-SLSSKSGQAAAA---TSSG

Query:  LPPISAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHSSAPFDARFSEDTTQ
        LPPISA+RLEQMS+AVRWLV+ELQ GSG  A  S HS SS  FD+RFSED+TQ
Subjt:  LPPISAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHSSAPFDARFSEDTTQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGCCGGCAGATCGGTTGAAGATTTGCAGTTGGTCGGAGCAGAAGATTTGGAGTTGGTCGGAGCAGAAGATTTGGAGTTGGTCGGAGCAGAAGATTTGTGGTTTGC
CTCGACCCCTTTTCTCTTTCGGTATTCTGATATGGACAGCCTAGTGGACTCTTTAAATAACGCATATCAGGAGTTTGTTGCTGGAGCAGCTAGCGTCCTTGAAGCAAACG
AAACCTCTGGAGCCCAGAAGACAGCAGCAACAGACGCAGCTCTTGAGAACTTTAAACAGAAATGGGAGCTATTCATGGTTGCTTGTGATCAAGCAGAGGAGTTTGTGGAG
TCTGTGAAGCAAAGGATAGGATCAGAGTGCCTGATTGATGAGGCCACGGGTTCACTGTCCAGCAAGTCTGGGCAGGCCGCCGCTGCCACGTCTTCTGGCCTTCCTCCGAT
CAGTGCCATTCGGCTCGAACAGATGAGCAAAGCTGTGAGATGGCTTGTGATTGAGTTGCAGCATGGCTCCGGAGCTGCTGCTTCTGCTTCAGCACACTCCCACTCTTCCG
CTCCTTTTGACGCTCGATTTAGCGAGGATACAACCCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGGCCGGCAGATCGGTTGAAGATTTGCAGTTGGTCGGAGCAGAAGATTTGGAGTTGGTCGGAGCAGAAGATTTGGAGTTGGTCGGAGCAGAAGATTTGTGGTTTGC
CTCGACCCCTTTTCTCTTTCGGTATTCTGATATGGACAGCCTAGTGGACTCTTTAAATAACGCATATCAGGAGTTTGTTGCTGGAGCAGCTAGCGTCCTTGAAGCAAACG
AAACCTCTGGAGCCCAGAAGACAGCAGCAACAGACGCAGCTCTTGAGAACTTTAAACAGAAATGGGAGCTATTCATGGTTGCTTGTGATCAAGCAGAGGAGTTTGTGGAG
TCTGTGAAGCAAAGGATAGGATCAGAGTGCCTGATTGATGAGGCCACGGGTTCACTGTCCAGCAAGTCTGGGCAGGCCGCCGCTGCCACGTCTTCTGGCCTTCCTCCGAT
CAGTGCCATTCGGCTCGAACAGATGAGCAAAGCTGTGAGATGGCTTGTGATTGAGTTGCAGCATGGCTCCGGAGCTGCTGCTTCTGCTTCAGCACACTCCCACTCTTCCG
CTCCTTTTGACGCTCGATTTAGCGAGGATACAACCCAATAGGTACCTATCTTATAAAAACAGCTTGATATGGACCCGGGTCTGAGATTGTCATACCACTCGTAGGCTATA
ACATAACAAGTATTTTGTGTTTTTCATGTTCTTCATTACCTTCTCCCACGATCATTTGTAAGACAGCTGAGAGCTTGAGATTACATTCATCATTGCTGCCCTAGACATTG
AAAATATATTCAATGATG
Protein sequenceShow/hide protein sequence
MVAGRSVEDLQLVGAEDLELVGAEDLELVGAEDLWFASTPFLFRYSDMDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVE
SVKQRIGSECLIDEATGSLSSKSGQAAAATSSGLPPISAIRLEQMSKAVRWLVIELQHGSGAAASASAHSHSSAPFDARFSEDTTQ