; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg22978 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22978
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionzinc finger CCCH domain-containing protein 38 isoform X2
Genome locationCarg_Chr02:1980437..1981084
RNA-Seq ExpressionCarg22978
SyntenyCarg22978
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604278.1 Zinc finger CCCH domain-containing protein 38, partial [Cucurbita argyrosperma subsp. sororia]5.0e-10894.84Show/hide
Query:  DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV
        DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV
Subjt:  DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV

Query:  MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTNPK
        MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASAS+DNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTN K
Subjt:  MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTNPK

Query:  ----SFRWKFQSQ
            +FR K Q +
Subjt:  ----SFRWKFQSQ

KAG7035120.1 hypothetical protein SDJN02_01915, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-118100Show/hide
Query:  MDKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCN
        MDKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCN
Subjt:  MDKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCN

Query:  VMQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTNP
        VMQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTNP
Subjt:  VMQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTNP

Query:  KSFRWKFQSQTAEGG
        KSFRWKFQSQTAEGG
Subjt:  KSFRWKFQSQTAEGG

XP_022949979.1 zinc finger CCCH domain-containing protein 38 isoform X2 [Cucurbita moschata]1.1e-10794.37Show/hide
Query:  DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV
        DKKEQTASEEPRYTWPSD+KCDHGLNNESKTRWDRAVD KTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV
Subjt:  DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV

Query:  MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTNPK
        MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNV LGQRMAYHSDHPDGTVTNPK
Subjt:  MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTNPK

Query:  ----SFRWKFQSQ
            +FR K Q +
Subjt:  ----SFRWKFQSQ

XP_022949980.1 zinc finger CCCH domain-containing protein 38 isoform X3 [Cucurbita moschata]1.1e-10794.37Show/hide
Query:  DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV
        DKKEQTASEEPRYTWPSD+KCDHGLNNESKTRWDRAVD KTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV
Subjt:  DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV

Query:  MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTNPK
        MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNV LGQRMAYHSDHPDGTVTNPK
Subjt:  MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTNPK

Query:  ----SFRWKFQSQ
            +FR K Q +
Subjt:  ----SFRWKFQSQ

XP_022949981.1 zinc finger CCCH domain-containing protein 38 isoform X4 [Cucurbita moschata]1.1e-10794.37Show/hide
Query:  DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV
        DKKEQTASEEPRYTWPSD+KCDHGLNNESKTRWDRAVD KTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV
Subjt:  DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV

Query:  MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTNPK
        MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNV LGQRMAYHSDHPDGTVTNPK
Subjt:  MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTNPK

Query:  ----SFRWKFQSQ
            +FR K Q +
Subjt:  ----SFRWKFQSQ

TrEMBL top hitse value%identityAlignment
A0A6J1GDJ5 zinc finger CCCH domain-containing protein 38 isoform X45.4e-10894.37Show/hide
Query:  DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV
        DKKEQTASEEPRYTWPSD+KCDHGLNNESKTRWDRAVD KTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV
Subjt:  DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV

Query:  MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTNPK
        MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNV LGQRMAYHSDHPDGTVTNPK
Subjt:  MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTNPK

Query:  ----SFRWKFQSQ
            +FR K Q +
Subjt:  ----SFRWKFQSQ

A0A6J1GDK5 zinc finger CCCH domain-containing protein 38 isoform X55.4e-10894.37Show/hide
Query:  DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV
        DKKEQTASEEPRYTWPSD+KCDHGLNNESKTRWDRAVD KTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV
Subjt:  DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV

Query:  MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTNPK
        MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNV LGQRMAYHSDHPDGTVTNPK
Subjt:  MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTNPK

Query:  ----SFRWKFQSQ
            +FR K Q +
Subjt:  ----SFRWKFQSQ

A0A6J1GEA4 zinc finger CCCH domain-containing protein 38 isoform X15.4e-10894.37Show/hide
Query:  DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV
        DKKEQTASEEPRYTWPSD+KCDHGLNNESKTRWDRAVD KTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV
Subjt:  DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV

Query:  MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTNPK
        MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNV LGQRMAYHSDHPDGTVTNPK
Subjt:  MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTNPK

Query:  ----SFRWKFQSQ
            +FR K Q +
Subjt:  ----SFRWKFQSQ

A0A6J1GEA9 zinc finger CCCH domain-containing protein 38 isoform X35.4e-10894.37Show/hide
Query:  DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV
        DKKEQTASEEPRYTWPSD+KCDHGLNNESKTRWDRAVD KTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV
Subjt:  DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV

Query:  MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTNPK
        MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNV LGQRMAYHSDHPDGTVTNPK
Subjt:  MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTNPK

Query:  ----SFRWKFQSQ
            +FR K Q +
Subjt:  ----SFRWKFQSQ

A0A6J1GEH4 zinc finger CCCH domain-containing protein 38 isoform X25.4e-10894.37Show/hide
Query:  DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV
        DKKEQTASEEPRYTWPSD+KCDHGLNNESKTRWDRAVD KTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV
Subjt:  DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNV

Query:  MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTNPK
        MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNV LGQRMAYHSDHPDGTVTNPK
Subjt:  MQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTNPK

Query:  ----SFRWKFQSQ
            +FR K Q +
Subjt:  ----SFRWKFQSQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAAAAAGAACAAACTGCTAGTGAAGAGCCAAGATATACATGGCCTTCAGATAAAAAATGTGATCATGGTTTGAATAATGAGAGCAAAACTCGGTGGGATCGAGC
TGTTGATACCAAGACAGTGCGAAGCAACAAGAACGATGCCATTCCGAGCAAGGCAGAGAATGCTGGTGGTTGCACAGGCAGTTCTGACCCTAGAGGTCACAGAAAGTGGC
CAAGTGATGATATGGAGATGTCTCCTGATTGGCACTACCCTGTGCAACCATCCAATCATGTAGTGAAAGGCGATTGCAACGTTATGCAAGATTCTGGCTCTCAAACTTCC
ACGGCTTTAGCCATTAGCCATGCGATAGTTCAAGAGGCTCTGGCTAAGAATCAAGACATTGCCATAGAGCCCATAGTAGTTGATATTACTCGTTTTCAGAAAAACCAAAC
TTTAACGAAAGATGATACTATTGCATCAGCTTCCAATGATAACATTACAATTGACAGAACGGCTGCTTCACATGCTGAAGGCAATCCTTCGGGTAACGTTGTCCTTGGAC
AAAGAATGGCATATCACAGTGACCATCCCGACGGAACTGTAACGAATCCGAAAAGTTTCAGATGGAAATTTCAGAGTCAAACTGCAGAAGGAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAAAAAAGAACAAACTGCTAGTGAAGAGCCAAGATATACATGGCCTTCAGATAAAAAATGTGATCATGGTTTGAATAATGAGAGCAAAACTCGGTGGGATCGAGC
TGTTGATACCAAGACAGTGCGAAGCAACAAGAACGATGCCATTCCGAGCAAGGCAGAGAATGCTGGTGGTTGCACAGGCAGTTCTGACCCTAGAGGTCACAGAAAGTGGC
CAAGTGATGATATGGAGATGTCTCCTGATTGGCACTACCCTGTGCAACCATCCAATCATGTAGTGAAAGGCGATTGCAACGTTATGCAAGATTCTGGCTCTCAAACTTCC
ACGGCTTTAGCCATTAGCCATGCGATAGTTCAAGAGGCTCTGGCTAAGAATCAAGACATTGCCATAGAGCCCATAGTAGTTGATATTACTCGTTTTCAGAAAAACCAAAC
TTTAACGAAAGATGATACTATTGCATCAGCTTCCAATGATAACATTACAATTGACAGAACGGCTGCTTCACATGCTGAAGGCAATCCTTCGGGTAACGTTGTCCTTGGAC
AAAGAATGGCATATCACAGTGACCATCCCGACGGAACTGTAACGAATCCGAAAAGTTTCAGATGGAAATTTCAGAGTCAAACTGCAGAAGGAGGATGA
Protein sequenceShow/hide protein sequence
MDKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNVMQDSGSQTS
TALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTNPKSFRWKFQSQTAEGG