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Carg22980 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22980
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein L17
Genome locationCarg_Chr02:1984422..1987768
RNA-Seq ExpressionCarg22980
SyntenyCarg22980
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000456 - Ribosomal protein L17
IPR036373 - Ribosomal protein L17 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7034436.1 rplQ [Cucurbita argyrosperma subsp. argyrosperma]5.7e-7494.34Show/hide
Query:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGRDAA RVSMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQFGK       RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
        VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI

KAG7035122.1 rplQ [Cucurbita argyrosperma subsp. argyrosperma]1.1e-77100Show/hide
Query:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGKRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPM
        MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGKRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPM
Subjt:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGKRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPM

Query:  AYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
        AYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
Subjt:  AYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI

XP_022947437.1 uncharacterized protein LOC111451296 [Cucurbita moschata]4.9e-7393.63Show/hide
Query:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGRDAAHR+SMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQFGK       RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDS
        VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSD+
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDS

XP_022979157.1 uncharacterized protein LOC111478877 [Cucurbita maxima]7.5e-7493.71Show/hide
Query:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGR AAHR+SMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQFGK       RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
        VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI

XP_023533917.1 uncharacterized protein LOC111795618 [Cucurbita pepo subsp. pepo]1.5e-7494.34Show/hide
Query:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGRDAAHR+SMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQFGK       RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
        VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI

TrEMBL top hitse value%identityAlignment
A0A5D3DPW3 50S ribosomal protein L173.9e-6886.16Show/hide
Query:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGR AAHR+SMLRTMVSQLVKHERIETTV KAKE+RRLADNMVQ GK       R AAAFVRGD +LHKLFTELAYRYKDRAGGYTR LRTRIR
Subjt:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
        VGDAAPMAYIEF+DRENELRQSKPPNP PPQ+ P+DPWTRSRLSKQ APPKEIKSDSEI
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI

A0A6J1BS83 uncharacterized protein LOC1110052806.4e-7189.94Show/hide
Query:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGR   HR+SMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQFGK       R AAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
        VGDAAPMAYIEFIDRENELRQSKPPNPQP QKAP+DPWTRSRLSKQFAPPKEIKSDSE+
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI

A0A6J1G6G2 uncharacterized protein LOC1114512962.3e-7393.63Show/hide
Query:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGRDAAHR+SMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQFGK       RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDS
        VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSD+
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDS

A0A6J1GDM4 uncharacterized protein LOC1114532093.1e-7393.71Show/hide
Query:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGRDAA RVSMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQFGK       RHAAAFVRGDDVLHKLFTELAYRYK RAGGYTRLLRTRIR
Subjt:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
        VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI

A0A6J1IN09 uncharacterized protein LOC1114788773.6e-7493.71Show/hide
Query:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGR AAHR+SMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQFGK       RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
        VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI

SwissProt top hitse value%identityAlignment
A0L5Z9 50S ribosomal protein L171.8e-2551.33Show/hide
Query:  RKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGD-DVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGD
        R+L RD +HR +M++ M+  L KHERIETTV +AKE+R +A+ ++  GK       R A + + GD +V+HKLFT+LA R KDR GGYTR+L+TR R GD
Subjt:  RKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGD-DVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGD

Query:  AAPMAYIEFIDRE
         APM++IE ++R+
Subjt:  AAPMAYIEFIDRE

A1ALW8 50S ribosomal protein L174.8e-2350.89Show/hide
Query:  RKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGKRH-------AAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA
        R+LGR  +HR +M R MV+ L  HE+I TT  KAKEIR +A+ M+  GKR        AAAF+R   V+ KLF+ +A RYK+RAGGYTR+++   R GDA
Subjt:  RKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGKRH-------AAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA

Query:  APMAYIEFIDRE
        APM+ IE ++ E
Subjt:  APMAYIEFIDRE

B3E858 50S ribosomal protein L174.8e-2350Show/hide
Query:  RKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA
        R+LGR  +HR++M R MV+ L+ HERI TT  KAKEIR +A+ M+  GK       R AAA++R   V+ KLF+ +A RYKDRAGGYTR+++   R+GDA
Subjt:  RKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA

Query:  APMAYIEFID
        A ++ IE ++
Subjt:  APMAYIEFID

Q749B4 50S ribosomal protein L176.2e-2340.54Show/hide
Query:  RKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA
        R+LGR  +HR++M R MV+ L  HERI TT  KAKE+R +A+ M+  GK       R AA+++R   V+ KLF+ +A RYK+R GGYTR+++  IR GD 
Subjt:  RKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA

Query:  APMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKE
        AP++ IE ++ + E +  K     P Q     P          A P+E
Subjt:  APMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKE

Q8RE45 50S ribosomal protein L172.5e-2450.91Show/hide
Query:  FRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGD
        +RKLGR A HR +ML+ M   L+K ERIETTVT+AKE+R+ A+ M+ FGK       R+A AF+R ++V+ K+F E+A +Y +R GGYTR+++T +R GD
Subjt:  FRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGD

Query:  AAPMAYIEFI
        +A MA IE +
Subjt:  AAPMAYIEFI

Arabidopsis top hitse value%identityAlignment
AT3G54210.1 Ribosomal protein L17 family protein3.1e-1741.67Show/hide
Query:  KLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAA
        KL R    R ++LR + +QL+KH RI+TT  +A  +R+  D M+   K       R A  ++    ++H LF E+  RY +R GGYTR++RT  R GD A
Subjt:  KLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAA

Query:  PMAYIEFI
        PMAYIE +
Subjt:  PMAYIEFI

AT5G09770.1 Ribosomal protein L17 family protein1.1e-6781.88Show/hide
Query:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGR A HR+SMLRTMVSQLVKHERIETTVTKAKE+RRLADNM+Q GK       R AA FVRGDDVLHK+FTELA+RYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIK-SDSEI
        VGDAAPMAYIEFIDRENELRQSKP  PQPPQ+ P+DPW RSRL++QFAPPKE K  DSE+
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIK-SDSEI

AT5G64650.1 Ribosomal protein L17 family protein2.7e-6679.38Show/hide
Query:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGR A HR+SMLRTMVSQLV+HERIETTVTKAKE+RRLADNM+Q GK       R AA FVRGDDVLHK+FTELA+RYKDRAGGYTR+LRTRIR
Subjt:  MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIK-SDSEI
        VGDAAPMAYIEFIDRENELRQSKP  PQPP + P+DPW RSRL++Q+APPKE K SDS++
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIK-SDSEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGAAGTTCAGAAAGCTTGGTCGAGATGCAGCTCACCGGGTGTCTATGCTGAGAACAATGGTTTCTCAGTTGGTGAAGCACGAGCGGATTGAGACTACTGTTACAAA
GGCTAAAGAAATTCGGCGGCTTGCTGATAACATGGTTCAATTTGGAAAGAGGCATGCTGCTGCATTTGTAAGAGGCGATGATGTCCTTCACAAACTATTCACAGAACTGG
CTTATCGATACAAAGATAGAGCTGGTGGATATACAAGACTTCTTCGGACGCGTATACGTGTTGGCGATGCTGCACCAATGGCTTATATAGAATTTATTGATAGAGAAAAT
GAGCTGAGACAGTCGAAGCCTCCAAATCCCCAACCACCTCAGAAGGCTCCAATGGATCCATGGACAAGATCACGGCTTAGCAAGCAGTTCGCACCACCCAAAGAGATCAA
ATCTGACTCTGAAATCTGA
mRNA sequenceShow/hide mRNA sequence
AATACGTGGTCTTTGGCAGAACAATTAAGTTTTTGCTTTCTTTAAAACGGTTGTTTGGCCCATCCGAAACGAAACCGGAGGGTTTTTCATCTTCGAACTCAGTCTTTGCT
TTCTTTCCGCCATTAACAATGACGAAGTTCAGAAAGCTTGGTCGAGATGCAGCTCACCGGGTGTCTATGCTGAGAACAATGGTTTCTCAGTTGGTGAAGCACGAGCGGAT
TGAGACTACTGTTACAAAGGCTAAAGAAATTCGGCGGCTTGCTGATAACATGGTTCAATTTGGAAAGAGGCATGCTGCTGCATTTGTAAGAGGCGATGATGTCCTTCACA
AACTATTCACAGAACTGGCTTATCGATACAAAGATAGAGCTGGTGGATATACAAGACTTCTTCGGACGCGTATACGTGTTGGCGATGCTGCACCAATGGCTTATATAGAA
TTTATTGATAGAGAAAATGAGCTGAGACAGTCGAAGCCTCCAAATCCCCAACCACCTCAGAAGGCTCCAATGGATCCATGGACAAGATCACGGCTTAGCAAGCAGTTCGC
ACCACCCAAAGAGATCAAATCTGACTCTGAAATCTGA
Protein sequenceShow/hide protein sequence
MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGKRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDREN
ELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI