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Carg22995 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22995
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAlba domain-containing protein
Genome locationCarg_Chr05:10898546..10900593
RNA-Seq ExpressionCarg22995
SyntenyCarg22995
Gene Ontology termsGO:0048235 - pollen sperm cell differentiation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR014560 - Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599323.1 Flowering locus K-likey domain protein, partial [Cucurbita argyrosperma subsp. sororia]8.6e-6593.29Show/hide
Query:  MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
        MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
Subjt:  MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR

Query:  LVQKAKIEIVLGKSEKFDSLMTAATTVPEPAV-------ATATATAMAAPVAAEEKKEEESKEE
        LVQKAKIEIVLGKSEKFDSLMTAAT VPE AV       ATATATA AAP AAEEKKEEESKEE
Subjt:  LVQKAKIEIVLGKSEKFDSLMTAATTVPEPAV-------ATATATAMAAPVAAEEKKEEESKEE

XP_022946134.1 uncharacterized protein At2g34160-like isoform X1 [Cucurbita moschata]5.2e-70100Show/hide
Query:  MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
        MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
Subjt:  MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR

Query:  LVQKAKIEIVLGKSEKFDSLMTAATTVPEPAVATATATAMAAPVAAEEKKEEESKEEQ
        LVQKAKIEIVLGKSEKFDSLMTAATTVPEPAVATATATAMAAPVAAEEKKEEESKEEQ
Subjt:  LVQKAKIEIVLGKSEKFDSLMTAATTVPEPAVATATATAMAAPVAAEEKKEEESKEEQ

XP_022946135.1 uncharacterized protein At2g34160-like isoform X2 [Cucurbita moschata]1.6e-6394.3Show/hide
Query:  MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
        MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGM         EILKNNGLATEKKVLTSTVGMKDENKGR
Subjt:  MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR

Query:  LVQKAKIEIVLGKSEKFDSLMTAATTVPEPAVATATATAMAAPVAAEEKKEEESKEEQ
        LVQKAKIEIVLGKSEKFDSLMTAATTVPEPAVATATATAMAAPVAAEEKKEEESKEEQ
Subjt:  LVQKAKIEIVLGKSEKFDSLMTAATTVPEPAVATATATAMAAPVAAEEKKEEESKEEQ

XP_022999100.1 uncharacterized protein At2g34160 isoform X1 [Cucurbita maxima]1.5e-6493.25Show/hide
Query:  MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
        MATMAVSGATAAATPTP AAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
Subjt:  MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR

Query:  LVQKAKIEIVLGKSEKFDSLMTAATTVPEPAVAT-----ATATAMAAPVAAEEKKEEESKEEQ
        LVQKAKIEIVLGKSEKFDSLMTAAT VPE AVAT     ATAT  AAP AAEEKKEEESKEEQ
Subjt:  LVQKAKIEIVLGKSEKFDSLMTAATTVPEPAVAT-----ATATAMAAPVAAEEKKEEESKEEQ

XP_023521159.1 uncharacterized protein At2g34160-like isoform X1 [Cucurbita pepo subsp. pepo]2.5e-6492.12Show/hide
Query:  MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
        MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
Subjt:  MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR

Query:  LVQKAKIEIVLGKSEKFDSLMTAATTVPEPA-------VATATATAMAAPVAAEEKKEEESKEEQ
        LVQKAKIEIVLGKSEKFDSLMTAAT VPE A        ATAT TA AAP AAEEKKEEESKEEQ
Subjt:  LVQKAKIEIVLGKSEKFDSLMTAATTVPEPA-------VATATATAMAAPVAAEEKKEEESKEEQ

TrEMBL top hitse value%identityAlignment
A0A0A0LG69 Alba domain-containing protein1.8e-5284.08Show/hide
Query:  ATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL
        AT+AVSGAT          ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL
Subjt:  ATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL

Query:  VQKAKIEIVLGKSEKFDSLMTAATTVPEPAVATATATAMAAPVAAEEKKEEESKEEQ
        VQKAKIEIVLGKSEKFDSLMTAAT VPE  VA A A       A EEKK EESKEEQ
Subjt:  VQKAKIEIVLGKSEKFDSLMTAATTVPEPAVATATATAMAAPVAAEEKKEEESKEEQ

A0A6J1G2Y0 uncharacterized protein At2g34160-like isoform X12.5e-70100Show/hide
Query:  MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
        MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
Subjt:  MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR

Query:  LVQKAKIEIVLGKSEKFDSLMTAATTVPEPAVATATATAMAAPVAAEEKKEEESKEEQ
        LVQKAKIEIVLGKSEKFDSLMTAATTVPEPAVATATATAMAAPVAAEEKKEEESKEEQ
Subjt:  LVQKAKIEIVLGKSEKFDSLMTAATTVPEPAVATATATAMAAPVAAEEKKEEESKEEQ

A0A6J1G2Y2 uncharacterized protein At2g34160-like isoform X27.9e-6494.3Show/hide
Query:  MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
        MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGM         EILKNNGLATEKKVLTSTVGMKDENKGR
Subjt:  MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR

Query:  LVQKAKIEIVLGKSEKFDSLMTAATTVPEPAVATATATAMAAPVAAEEKKEEESKEEQ
        LVQKAKIEIVLGKSEKFDSLMTAATTVPEPAVATATATAMAAPVAAEEKKEEESKEEQ
Subjt:  LVQKAKIEIVLGKSEKFDSLMTAATTVPEPAVATATATAMAAPVAAEEKKEEESKEEQ

A0A6J1KC55 uncharacterized protein At2g34160 isoform X22.2e-5887.73Show/hide
Query:  MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
        MATMAVSGATAAATPTP AAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGM         EILKNNGLATEKKVLTSTVGMKDENKGR
Subjt:  MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR

Query:  LVQKAKIEIVLGKSEKFDSLMTAATTVPEPAVAT-----ATATAMAAPVAAEEKKEEESKEEQ
        LVQKAKIEIVLGKSEKFDSLMTAAT VPE AVAT     ATAT  AAP AAEEKKEEESKEEQ
Subjt:  LVQKAKIEIVLGKSEKFDSLMTAATTVPEPAVAT-----ATATAMAAPVAAEEKKEEESKEEQ

A0A6J1KEC8 uncharacterized protein At2g34160 isoform X17.1e-6593.25Show/hide
Query:  MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
        MATMAVSGATAAATPTP AAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
Subjt:  MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR

Query:  LVQKAKIEIVLGKSEKFDSLMTAATTVPEPAVAT-----ATATAMAAPVAAEEKKEEESKEEQ
        LVQKAKIEIVLGKSEKFDSLMTAAT VPE AVAT     ATAT  AAP AAEEKKEEESKEEQ
Subjt:  LVQKAKIEIVLGKSEKFDSLMTAATTVPEPAVAT-----ATATAMAAPVAAEEKKEEESKEEQ

SwissProt top hitse value%identityAlignment
O22969 Uncharacterized protein At2g341601.6e-3775.22Show/hide
Query:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL
        AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG A EKK++TSTV +KD+ +GR VQKAKIEI L KSEKFD L
Subjt:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL

Query:  MTAATTVPEPAVA
        M AA    E A A
Subjt:  MTAATTVPEPAVA

Arabidopsis top hitse value%identityAlignment
AT1G29250.1 Alba DNA/RNA-binding protein5.1e-3975.22Show/hide
Query:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL
        A +TQKKNRIQVSNTKKPLFFYVNLAKRY+QQ+ +VELSALGMAI TVVT+AEILKNNG A EKK++TSTV +KD+++GR VQKAKIEI L KSEKFD L
Subjt:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL

Query:  MTAATTVPEPAVA
        M AA    E A A
Subjt:  MTAATTVPEPAVA

AT2G34160.1 Alba DNA/RNA-binding protein1.1e-3875.22Show/hide
Query:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL
        AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG A EKK++TSTV +KD+ +GR VQKAKIEI L KSEKFD L
Subjt:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL

Query:  MTAATTVPEPAVA
        M AA    E A A
Subjt:  MTAATTVPEPAVA

AT3G04620.1 Alba DNA/RNA-binding protein5.8e-4368.35Show/hide
Query:  MAVSGATAAATPTPA-------------AAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTST
        MA+  AT A  P P+              A  ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+EILKNNGLATEKKVLTST
Subjt:  MAVSGATAAATPTPA-------------AAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTST

Query:  VGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATTVPEPAVATATATAMAAPVAAEE
        VGMKDE KG++VQKAKIEIVLGKS+KFDSL+   T    P    A+A   A+  A EE
Subjt:  VGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATTVPEPAVATATATAMAAPVAAEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGATGGCAGTTTCGGGAGCCACAGCCGCAGCCACCCCCACACCCGCGGCCGCCGCCACTGAAACACAGAAGAAGAACAGAATCCAGGTTTCCAACACCAAGAA
ACCCCTCTTCTTCTACGTTAATCTTGCTAAGAGGTACATTCAACAACACAATGAGGTGGAGCTTTCCGCCTTGGGAATGGCAATCACTACCGTTGTCACAATTGCAGAGA
TTCTAAAGAACAATGGACTGGCTACAGAGAAGAAAGTTTTGACTTCCACCGTCGGCATGAAAGATGAAAACAAAGGCCGTTTGGTTCAGAAAGCCAAGATTGAGATAGTT
CTCGGAAAGTCAGAGAAATTTGATTCTCTGATGACTGCGGCTACGACAGTACCAGAGCCGGCGGTGGCGACGGCGACGGCGACAGCGATGGCGGCTCCTGTTGCTGCTGA
AGAGAAAAAAGAAGAGGAAAGCAAGGAGGAGCAGTAG
mRNA sequenceShow/hide mRNA sequence
TTCCGAGAAAAGAAAATCCTCTCTGTTTCTTTGATCTGTGTGAGAGTGAGAGAGTTCGAAGTGTGAAGAACAACAGAAGCAATGGCGACGATGGCAGTTTCGGGAGCCAC
AGCCGCAGCCACCCCCACACCCGCGGCCGCCGCCACTGAAACACAGAAGAAGAACAGAATCCAGGTTTCCAACACCAAGAAACCCCTCTTCTTCTACGTTAATCTTGCTA
AGAGGTACATTCAACAACACAATGAGGTGGAGCTTTCCGCCTTGGGAATGGCAATCACTACCGTTGTCACAATTGCAGAGATTCTAAAGAACAATGGACTGGCTACAGAG
AAGAAAGTTTTGACTTCCACCGTCGGCATGAAAGATGAAAACAAAGGCCGTTTGGTTCAGAAAGCCAAGATTGAGATAGTTCTCGGAAAGTCAGAGAAATTTGATTCTCT
GATGACTGCGGCTACGACAGTACCAGAGCCGGCGGTGGCGACGGCGACGGCGACAGCGATGGCGGCTCCTGTTGCTGCTGAAGAGAAAAAAGAAGAGGAAAGCAAGGAGG
AGCAGTAGGGGGAGGAGGAGAGGTGAATTTGAATGTTACATTGTTGTAGTTTAAGAATCACATTGCAATGTTATAGGATAGGTTGTTTTCTTCTTTTTCTTGAACGGTCA
CGTTTATGAATGACATGTTTAGTGTCGTAATCCATTGTGTGATGAAGTGGATTGTGCTTCCGATCAGGTCATCTGCTCTTCTCATAGTATGGTTGTGACCATGTCATTAC
CCCAAAAAAATTTCAATTTTTTTCTCTCTCTACTGTGTTGAGACGTTGCATTTGGTTGGTACTTCTCTGTTGCATCTAATGAAGTAAATCTCTGATACTTCTTTT
Protein sequenceShow/hide protein sequence
MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIV
LGKSEKFDSLMTAATTVPEPAVATATATAMAAPVAAEEKKEEESKEEQ