CuGenDBv2

Gene ID	Carg23043
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Photosystem I reaction centre subunit N
Genome location	Carg_Chr11:9217506..9218094
RNA-Seq Expression	Carg23043
Synteny	Carg23043
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009507 - chloroplast (cellular component) GO:0009522 - photosystem I (cellular component)
InterPro domains	IPR008796 - Photosystem I reaction centre subunit N, chloroplastic

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6588719.1 hypothetical protein SDJN03_17284, partial [Cucurbita argyrosperma subsp. sororia]

2.5e-49

95.93

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Query:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
        MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTAT    TSASSDIQRRGLILSAAVAAAVDSRT+LLKRYLKKSEENKEKNDKERLESFYKRN
Subjt:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN

Query:  YKDYFEFVEGSLKNKDELSEAEK
        YKDYFEFVEGSLKNKDELSEAEK
Subjt:  YKDYFEFVEGSLKNKDELSEAEK

KAG7022506.1 hypothetical protein SDJN02_16238, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.0e-59

100

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Query:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
        MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
Subjt:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN

Query:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
        YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
Subjt:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK

XP_022927848.1 uncharacterized protein LOC111434615 [Cucurbita moschata]

3.5e-59

99.25

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Query:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
        MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGL+LSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
Subjt:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN

Query:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
        YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
Subjt:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK

XP_022989008.1 uncharacterized protein LOC111486201 [Cucurbita maxima]

8.9e-55

94.74

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Query:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
        MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTT     A+TSASSDIQRRGL+LSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
Subjt:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN

Query:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
        YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
Subjt:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK

XP_023531124.1 uncharacterized protein LOC111793462 [Cucurbita pepo subsp. pepo]

1.7e-58

98.5

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Query:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
        MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSAST ASSDIQRRGL+LSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
Subjt:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN

Query:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
        YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
Subjt:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C176 uncharacterized protein LOC103495319

7.9e-41

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Query:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILS-------AAVAAAVDSRTELLKRYLKKSEENKEKNDKERL
        MSSIGQ+ILMALA+TLN+FASSNVQSVQRNK            A+ + SS I RR L+LS       AA AAAVDSRTELLKRYLKKSEENKEKNDKERL
Subjt:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILS-------AAVAAAVDSRTELLKRYLKKSEENKEKNDKERL

Query:  ESFYKRNYKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
        ES+YKRNYKDYFEFVEGS+KNK+ELSEAEKGI+EWLKRNK
Subjt:  ESFYKRNYKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK

A0A2I4HLI8 uncharacterized protein LOC109019213

1.3e-35

69.12

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Query:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILSAAVAA--AVDSRTELLKRYLKKSEENKEKNDKERLESFYK
        MSSIGQ+ILMAL +T+N+FASSNVQ+V R + KTP +TT TT      +SDI RR L+LS  VAA    DSRT+LLK+YLKKSEENK KNDKERL+S+YK
Subjt:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILSAAVAA--AVDSRTELLKRYLKKSEENKEKNDKERLESFYK

Query:  RNYKDYFEFVEGSLK-NKDELSEAEKGIIEWLKRNK
        RNYKDYFEFVEG+ K N+++LSEAEKGII+WL+RNK
Subjt:  RNYKDYFEFVEGSLK-NKDELSEAEKGIIEWLKRNK

A0A6J1D574 uncharacterized protein LOC111017388 isoform X1

2.4e-37

70.37

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Query:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILSAAVAAA--VDSRTELLKRYLKKSEENKEKNDKERLESFYK
        MSSIGQ+ILMALA+T+N+FASSNVQSV RN+            ++ +A+SDI RRGL+ SA  AA   VDSRTELLKRYLKKSE+NKEKNDKERL+S+YK
Subjt:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILSAAVAAA--VDSRTELLKRYLKKSEENKEKNDKERLESFYK

Query:  RNYKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
        RNYKDYFEFVEGS++NK ELSE EK IIEWL+RNK
Subjt:  RNYKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK

A0A6J1EM63 uncharacterized protein LOC111434615

1.7e-59

99.25

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Query:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
        MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGL+LSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
Subjt:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN

Query:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
        YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
Subjt:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK

A0A6J1JNZ7 uncharacterized protein LOC111486201

4.3e-55

94.74

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Query:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
        MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTT     A+TSASSDIQRRGL+LSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
Subjt:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN

Query:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
        YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
Subjt:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G49975.1 INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

1.9e-31

58.39

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Query:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILSAA--VAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYK
        MSSI Q+ILMAL +T+N++ASSNVQ+V+RN  K          + T+  +D+ RR ++ S+   +AAA+ S  +LL++YLKK+EENK KNDKERL+SFYK
Subjt:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILSAA--VAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYK

Query:  RNYKDYFEFVEGSLKNKD--ELSEAEKGIIEWLKRNK
        RNYKDYFEFVEGS+K K   ELSE+EK I+EWLK NK
Subjt:  RNYKDYFEFVEGSLKNKD--ELSEAEKGIIEWLKRNK

Sequences

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CDS sequence

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ATGAGCTCCATCGGCCAAAACATCCTGATGGCTCTCGCCCTCACTCTCAACCAATTCGCTTCCTCAAACGTCCAATCCGTCCAGAGAAACAAACCCAAAACGCCACCCAC
CACCACCGCCACCACCTCCGCCTCCACCTCCGCCAGTTCTGACATTCAACGAAGAGGCCTCATCTTATCTGCCGCCGTGGCCGCCGCCGTGGACTCCAGAACCGAGCTCC
TAAAAAGGTACCTAAAGAAATCTGAAGAAAACAAAGAAAAGAACGACAAGGAGAGATTGGAGAGTTTCTACAAGCGAAATTACAAAGATTATTTTGAGTTTGTTGAAGGA
TCTTTGAAGAACAAGGATGAACTTTCTGAAGCTGAGAAAGGTATCATTGAGTGGCTTAAGAGAAACAAATAA

mRNA sequence

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Protein sequence

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MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEG
SLKNKDELSEAEKGIIEWLKRNK

Carg23043 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome