CuGenDBv2

Gene ID	Carg23045
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like
Genome location	Carg_Chr11:9224634..9229343
RNA-Seq Expression	Carg23045
Synteny	Carg23045
Gene Ontology terms	GO:0009787 - regulation of abscisic acid-activated signaling pathway (biological process) GO:0010100 - negative regulation of photomorphogenesis (biological process) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR039324 - Protein SHORT HYPOCOTYL IN WHITE LIGHT 1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6588721.1 Protein SHORT HYPOCOTYL IN WHITE LIGHT 1, partial [Cucurbita argyrosperma subsp. sororia]

1.7e-75

99.34

Show/hide

Query:  QGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLE
        QGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLE
Subjt:  QGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLE

Query:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS
        VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRF+RLDDDQHHAWTGAQPAS
Subjt:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS

KAG7022508.1 Protein SHORT HYPOCOTYL IN WHITE LIGHT 1, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.7e-132

100

Show/hide

Query:  FVQQKTKASANGCCSSTADHVLTCRSFTAVPLFHSSFSAAITNLSDLDSLPFLANFSHPPPGFQKNLQFLSGPPDFSSPLFAFVVFVLNLLDLFQGVDHL
        FVQQKTKASANGCCSSTADHVLTCRSFTAVPLFHSSFSAAITNLSDLDSLPFLANFSHPPPGFQKNLQFLSGPPDFSSPLFAFVVFVLNLLDLFQGVDHL
Subjt:  FVQQKTKASANGCCSSTADHVLTCRSFTAVPLFHSSFSAAITNLSDLDSLPFLANFSHPPPGFQKNLQFLSGPPDFSSPLFAFVVFVLNLLDLFQGVDHL

Query:  VDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLG
        VDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLG
Subjt:  VDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLG

Query:  TAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS
        TAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS
Subjt:  TAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS

XP_022927841.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata]

3.8e-75

98.68

Show/hide

Query:  QGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLE
        QGVDHLVDDRRNWNRSISSDFDI+GGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLE
Subjt:  QGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLE

Query:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS
        VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRF+RLDDDQHHAWTGAQPAS
Subjt:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS

XP_022988955.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima]

1.7e-75

99.34

Show/hide

Query:  QGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLE
        QGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLE
Subjt:  QGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLE

Query:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS
        VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRF+RLDDDQHHAWTGAQPAS
Subjt:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS

XP_023530484.1 LOW QUALITY PROTEIN: protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita pepo subsp. pepo]

1.7e-75

99.34

Show/hide

Query:  QGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLE
        QGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLE
Subjt:  QGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLE

Query:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS
        VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRF+RLDDDQHHAWTGAQPAS
Subjt:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D3L5 protein SHORT HYPOCOTYL IN WHITE LIGHT 1

6.7e-70

92.16

Show/hide

Query:  QGVDHLVDDRRNWNRSISSDFDIIGGEDD-EDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFL
        QGVD+LVDDRRNWNR ISSDFDI+GGEDD ED+EDEE+EEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLW+LKAFL
Subjt:  QGVDHLVDDRRNWNRSISSDFDIIGGEDD-EDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFL

Query:  EVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS
        +VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRF++LD++QHHAWTGAQPAS
Subjt:  EVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS

A0A6J1EIN7 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like

1.8e-75

98.68

Show/hide

Query:  QGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLE
        QGVDHLVDDRRNWNRSISSDFDI+GGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLE
Subjt:  QGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLE

Query:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS
        VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRF+RLDDDQHHAWTGAQPAS
Subjt:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS

A0A6J1GJK6 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like

1.1e-64

86.18

Show/hide

Query:  QGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLE
        QGVD  VDDRRNWN SI SDFD+IGGE++E++E++E+EEEDRSLDLLV+FVENVFRKVS+RARKAVRSVLPQSIPTKLVGF VNGVLMLAFLW+LKAFLE
Subjt:  QGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLE

Query:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS
        VICTLGTAVFVSILIIRGVW GILYLQDIRSHR ++LDDDQ HAWTGAQPAS
Subjt:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS

A0A6J1I8W5 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like

8.5e-65

85.81

Show/hide

Query:  QGVDHLVDDRRNWNRSISSDFDIIGGED---DEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKA
        QGVD+ VDDRRNWN SI SDFD+IGGE+   +E+DE++E++EEDRSLDLLV+FVENVFRKVS+RARKAVRSVLPQSIPTKLVGF VNGVLMLAFLW+LKA
Subjt:  QGVDHLVDDRRNWNRSISSDFDIIGGED---DEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKA

Query:  FLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS
        FLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRF++LDDDQ HAWTGAQPAS
Subjt:  FLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS

A0A6J1JL13 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like

8.2e-76

99.34

Show/hide

Query:  QGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLE
        QGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLE
Subjt:  QGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLE

Query:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS
        VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRF+RLDDDQHHAWTGAQPAS
Subjt:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS

SwissProt top hits

e value

%identity

Alignment

F4I3V6 Protein SHORT HYPOCOTYL IN WHITE LIGHT 1

1.5e-18

36.65

Show/hide

Query:  SAAITNLSDLDSLPFLA--NFSHPPPGFQKNLQFLSGPPDFSSPLFAFVVFVLNLLDLFQGVDHLVDDRRNWNRSI-----SSDFDIIGGEDDEDDEDEE
        +AA T LS   S P L   N SH         +F+S  P  S+ +F    F      L     H    RR +           ++D++  +D   D+D+E
Subjt:  SAAITNLSDLDSLPFLA--NFSHPPPGFQKNLQFLSGPPDFSSPLFAFVVFVLNLLDLFQGVDHLVDDRRNWNRSI-----SSDFDIIGGEDDEDDEDEE

Query:  NEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ
         +E + S+DLL+RF+ ++F+KVSKR +KA R +LP ++  +LV F+V+G+L+L  L I +AFLEVIC LG  VF  IL+IR  W    + Q
Subjt:  NEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G69935.1 short hypocotyl in white light1

1.1e-19

36.65

Show/hide

Query:  SAAITNLSDLDSLPFLA--NFSHPPPGFQKNLQFLSGPPDFSSPLFAFVVFVLNLLDLFQGVDHLVDDRRNWNRSI-----SSDFDIIGGEDDEDDEDEE
        +AA T LS   S P L   N SH         +F+S  P  S+ +F    F      L     H    RR +           ++D++  +D   D+D+E
Subjt:  SAAITNLSDLDSLPFLA--NFSHPPPGFQKNLQFLSGPPDFSSPLFAFVVFVLNLLDLFQGVDHLVDDRRNWNRSI-----SSDFDIIGGEDDEDDEDEE

Query:  NEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ
         +E + S+DLL+RF+ ++F+KVSKR +KA R +LP ++  +LV F+V+G+L+L  L I +AFLEVIC LG  VF  IL+IR  W    + Q
Subjt:  NEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ

AT4G33780.1 FUNCTIONS IN: molecular_function unknown

3.2e-48

65.16

Show/hide

Query:  DLFQGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKA
        D   G D   DD R+WNR I  ++      D E+D D+++EEEDRSLDLL+RFVENVFRK+SKRARKAVRS+LP SI TKLVGFSVNGVL+LAFLWILKA
Subjt:  DLFQGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKA

Query:  FLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS
        FLEV CTLGT VF SIL+IRG+W G+ Y+Q+ R++R N L DD   AW G QP S
Subjt:  FLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

mRNA sequence

Show/hide mRNA sequence

TTTGTTCAGCAAAAAACGAAAGCATCTGCAAACGGCTGCTGTTCTTCCACAGCTGATCATGTCCTTACCTGCCGCTCTTTCACCGCCGTCCCTCTATTCCATTCCTCATT
CTCAGCTGCGATTACCAACCTCTCGGACCTCGATTCTCTCCCATTCCTTGCAAATTTCTCACACCCTCCTCCGGGCTTCCAGAAGAACCTCCAATTTCTCTCAGGTCCAC
CGGATTTCTCTTCCCCTCTATTCGCCTTTGTTGTTTTTGTTCTCAATCTGCTCGATCTCTTCCAGGGAGTTGATCATTTGGTGGACGATCGGCGCAATTGGAACCGCTCG
ATTAGCTCCGACTTCGACATAATCGGTGGCGAAGACGACGAGGACGACGAGGATGAGGAAAATGAGGAAGAGGATAGAAGTTTGGATCTATTGGTCCGGTTTGTTGAGAA
TGTTTTCAGGAAGGTCTCGAAGCGAGCCAGGAAGGCTGTGAGATCGGTTCTTCCCCAATCCATCCCTACTAAACTGGTGGGATTTTCTGTCAATGGGGTACTAATGCTAG
CGTTTTTGTGGATTTTGAAGGCATTTCTTGAGGTGATATGCACCCTTGGAACTGCAGTGTTTGTGAGCATACTTATCATTCGTGGAGTGTGGACTGGCATCTTATATCTA
CAAGATATCCGCAGCCACAGATTCAATCGACTGGATGACGATCAGCACCATGCCTGGACTGGTGCACAACCTGCTTCCTGAATTCCTCACTTAACTACTTATACGTTATA
AGTGACAAGGTTAGTGATGACACATAAAAAGAAAAAAAAGGAAGATAAAGATTAGAATAAAATAGGCTTGGTTTCATAGCCTTCATACTTATTTCATGGTCAGTAAATTA
TTCGTTCTCTAAACTTCGTATAAAAAATTGTTTTAGTCCTTGCCAAAAGTGTTCATAAATAGTTAAACATAAGTTTAGGGGTGGGTTTCGAAACGAAATCGGATTTTTGG
AAATGCTTTACGAAAATAGCTGCAAGGACTATAACAACTTTCTATGCAAAGTTTATGGACTAAAATAGTAAAACATTTCGAAGTTTAAAGATCAAAATAAAATATGCATG
AAAGTTCGAATATCATAGTCGAGTTTAAACGAGTATAGCTGGAATTCTGTTCTCTATGATTCAATATAATTTTGTCCTTGTAGCTTTCTGTAGACTATGAAAGTATTTGT
TCTTTTTGCCTCAAATCTTTAGATCATGAGTAGAAACAGCAAGGGAGGGTAGCTTCTGATGTAATATTATGAGGCAGATTTGGTGTATTATTTGGTTGTAATGTTTTTTT
TGCGCAATGAAATTGGATTCGTAATGAAAAAACGAAACGAAATGAAAGGATACCTGAACACATTGTTGTACTGAGGCTG

Protein sequence

Show/hide protein sequence

FVQQKTKASANGCCSSTADHVLTCRSFTAVPLFHSSFSAAITNLSDLDSLPFLANFSHPPPGFQKNLQFLSGPPDFSSPLFAFVVFVLNLLDLFQGVDHLVDDRRNWNRS
ISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYL
QDIRSHRFNRLDDDQHHAWTGAQPAS

Carg23045 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome