; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg23079 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23079
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA-binding protein DDB_G0278111-like
Genome locationCarg_Chr07:718374..720982
RNA-Seq ExpressionCarg23079
SyntenyCarg23079
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR002836 - PDCD5-like
IPR036883 - PDCD5-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022925642.1 DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita moschata]8.0e-5396.88Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT
        MDDPELEAIRQRRMQELMAQRG+GSQ+NPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LIT
Subjt:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        LLEQINNQTTKQTKVTIQRRRSVL+DDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

XP_022926831.1 DNA-binding protein DDB_G0278111-like [Cucurbita moschata]2.5e-54100Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT
        MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT
Subjt:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        LLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

XP_023518943.1 DNA-binding protein DDB_G0278111-like [Cucurbita pepo subsp. pepo]3.3e-5499.22Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT
        MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT
Subjt:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        LLEQINNQTTKQTKVTIQRRRS+LEDDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

XP_023543163.1 DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita pepo subsp. pepo]2.3e-5296.88Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT
        MDDPELEAIRQRRMQELMAQRG GSQ+NPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LIT
Subjt:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        LLEQINNQTTKQTKVTIQRRRSVL+DDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

XP_038881892.1 DNA-binding protein DDB_G0278111 [Benincasa hispida]2.8e-5397.66Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT
        MDDPELEAIRQRRMQELMAQRGMGSQ+NPEQQKAQEEA+SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LIT
Subjt:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        LLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

TrEMBL top hitse value%identityAlignment
A0A1S3AZB0 DNA-binding protein DDB_G02781111.1e-5296.09Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT
        M+DPELEAIRQRRMQELMAQRGMGSQ+NPEQQKAQEEA+SEAEERRQMMLSQILSMQARERL+RIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LIT
Subjt:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        LLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

A0A6J1EC84 DNA-binding protein DDB_G0278111-like isoform X23.9e-5396.88Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT
        MDDPELEAIRQRRMQELMAQRG+GSQ+NPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LIT
Subjt:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        LLEQINNQTTKQTKVTIQRRRSVL+DDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

A0A6J1EFZ2 DNA-binding protein DDB_G0278111-like1.2e-54100Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT
        MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT
Subjt:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        LLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

A0A6J1IVC3 DNA-binding protein DDB_G0278111-like isoform X23.9e-5396.88Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT
        MDDPELEAIRQRRMQELMAQRG+GSQ+NPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LIT
Subjt:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        LLEQINNQTTKQTKVTIQRRRSVL+DDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

A0A6J1KTQ8 DNA-binding protein DDB_G0278111-like1.2e-54100Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT
        MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT
Subjt:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        LLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

SwissProt top hitse value%identityAlignment
O14737 Programmed cell death protein 54.8e-1642.97Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT
        M D ELEA+R++R+ EL A+ G    +      AQ+EAK    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI 
Subjt:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        +L++++ QT K T V   RR+ +  D+D
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

P56812 Programmed cell death protein 54.8e-1642.97Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT
        M D ELEA+R++R+ EL A+ G    +      AQ+EAK    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI 
Subjt:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        +LE+++ QT K+T V   RR+ +  D+D
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

Q2HJH9 Programmed cell death protein 51.8e-1542.19Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT
        M + ELEA+R++R+ EL A+ G    +      AQ+EAK    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI 
Subjt:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        +LE+++ QT K+T V   RR+ +  D+D
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

Q54YS0 DNA-binding protein DDB_G02781118.7e-1850Show/hide
Query:  QRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTT
        ++ +Q+ ++Q   G   +PE Q+ QE  + EA ERRQ +L QIL+  ARERL+RI +VKPEK+R +ED+I+RAAQ GQ+ E+V + KLI+LLEQ+ ++ T
Subjt:  QRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTT

Query:  KQTKVTIQRRRSVLEDDD
        K+T +T++RR   +EDDD
Subjt:  KQTKVTIQRRRSVLEDDD

Q5RBT0 Programmed cell death protein 54.8e-1642.97Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT
        M D ELEA+R++R+ EL A+ G    +      AQ+EAK    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI 
Subjt:  MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        +L++++ QT K T V   RR+ +  D+D
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

Arabidopsis top hitse value%identityAlignment
AT1G29850.1 double-stranded DNA-binding family protein2.7e-4683.21Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGM---GSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEK
        M DPELEAIRQRRMQELMA++GM   G+Q NPEQ+K QE+AK EA+ERRQMMLSQ+LS QARER+ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+
Subjt:  MDDPELEAIRQRRMQELMAQRGM---GSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEK

Query:  LITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        LITLLEQIN+QTTKQTKVT QRRR V  DDD
Subjt:  LITLLEQINNQTTKQTKVTIQRRRSVLEDDD

AT1G29850.2 double-stranded DNA-binding family protein3.5e-4682.58Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGM----GSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE
        M DPELEAIRQRRMQELMA++GM    G+Q NPEQ+K QE+AK EA+ERRQMMLSQ+LS QARER+ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE
Subjt:  MDDPELEAIRQRRMQELMAQRGM----GSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE

Query:  KLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        +LITLLEQIN+QTTKQTKVT QRRR V  DDD
Subjt:  KLITLLEQINNQTTKQTKVTIQRRRSVLEDDD

AT1G29850.3 double-stranded DNA-binding family protein7.2e-4480.95Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGM---GSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEK
        M DPELEAIRQRRMQELMA++GM   G+Q NPEQ+K QE+AK EA+ERRQMMLSQ+LS QARER+ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+
Subjt:  MDDPELEAIRQRRMQELMAQRGM---GSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEK

Query:  LITLLEQINNQTTKQTKVTIQRRRSV
        LITLLEQIN+QTTKQTKVT+    +V
Subjt:  LITLLEQINNQTTKQTKVTIQRRRSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGATCCTGAACTAGAAGCAATCAGGCAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCATGGGAAGCCAAAGTAATCCAGAGCAACAGAAGGCCCAGGAAGA
GGCTAAGAGTGAAGCAGAGGAACGCAGACAAATGATGCTCAGCCAGATTCTGTCAATGCAAGCGAGGGAAAGACTTGCTCGAATTGCGTTGGTTAAACCTGAGAAGGCTA
GAGGTGTCGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAGATTGTAGAGAAGGTGTCTGAAGAAAAGCTTATAACATTGCTTGAACAGATCAACAACCAGACCACA
AAACAGACGAAAGTCACTATACAAAGGCGTCGAAGTGTCCTTGAGGACGACGATTAG
mRNA sequenceShow/hide mRNA sequence
TAATATAATGAAGCCGGAATACTTTCTATATTTGGCCAATCCACCGCTAAGATAGAGTTCCGATACGATCGACAGGGCAAAAGTGGGTCGCGTCTCATAAACGCAACCAA
GGAAATCCGCAGCTTCCTTTACCTCTGCAGGCTGCACCTTATAGGAAAATCTTGAACTGTTCTTCTACTGACTGCTAGTGCTAGCTCGATCTTCGAAACAATGGATGATC
CTGAACTAGAAGCAATCAGGCAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCATGGGAAGCCAAAGTAATCCAGAGCAACAGAAGGCCCAGGAAGAGGCTAAGAGT
GAAGCAGAGGAACGCAGACAAATGATGCTCAGCCAGATTCTGTCAATGCAAGCGAGGGAAAGACTTGCTCGAATTGCGTTGGTTAAACCTGAGAAGGCTAGAGGTGTCGA
AGATGTTATACTGAGAGCTGCACAGATGGGCCAGATTGTAGAGAAGGTGTCTGAAGAAAAGCTTATAACATTGCTTGAACAGATCAACAACCAGACCACAAAACAGACGA
AAGTCACTATACAAAGGCGTCGAAGTGTCCTTGAGGACGACGATTAG
Protein sequenceShow/hide protein sequence
MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTT
KQTKVTIQRRRSVLEDDD