CuGenDBv2

Gene ID	Carg23098
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cyclic phosphodiesterase-like
Genome location	Carg_Chr07:815088..815899
RNA-Seq Expression	Carg23098
Synteny	Carg23098
Gene Ontology terms	GO:0009187 - cyclic nucleotide metabolic process (biological process) GO:0004113 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity (molecular function)
InterPro domains	IPR009097 - Cyclic phosphodiesterase IPR012386 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6594517.1 Cyclic phosphodiesterase, partial [Cucurbita argyrosperma subsp. sororia]

1.9e-103

98.94

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Query:  MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIH
        MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGA RLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIH
Subjt:  MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIH

Query:  PTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS
        PTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDT DETLKSWEKIAEHDLPS
Subjt:  PTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS

KAG7026502.1 Cyclic phosphodiesterase, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.5e-105

100

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Query:  MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIH
        MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIH
Subjt:  MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIH

Query:  PTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS
        PTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS
Subjt:  PTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS

XP_022926309.1 cyclic phosphodiesterase-like [Cucurbita moschata]

3.9e-104

99.47

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Query:  MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIH
        MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGA RLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIH
Subjt:  MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIH

Query:  PTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS
        PTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS
Subjt:  PTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS

XP_023003151.1 cyclic phosphodiesterase-like [Cucurbita maxima]

9.5e-103

98.41

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Query:  MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIH
        MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGA RLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIH
Subjt:  MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIH

Query:  PTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS
        PTTEVVQISSHCCGHFG NNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVP+TRLALYKTDTGDETLKSWEKIAEHDLPS
Subjt:  PTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS

XP_023518208.1 cyclic phosphodiesterase-like isoform X2 [Cucurbita pepo subsp. pepo]

1.1e-101

97.35

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Query:  MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIH
        MANP S PIEPCEGELYS+WALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGA RLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIH
Subjt:  MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIH

Query:  PTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS
        PTTEVVQISSHCC HFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS
Subjt:  PTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3AYZ1 cyclic phosphodiesterase-like

6.1e-79

76.96

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Query:  MANPNSAPIEPCEGE--LYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLL
        M NP SA I+  E E  +YSVWALPPEDV+ +I +LM+SLRSEFGGP+FEPHITVVGA RLT +DALNKF +AC+G+KAYQATVD VS GT FYQCVFLL
Subjt:  MANPNSAPIEPCEGE--LYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLL

Query:  IHPTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS
        IHPTTEVV+ SSH C HFG+ NSTPYMPH+SLLYA+ISDE KK+AKEIADKL+EAVNGLK P+TRLAL+KTDT DETLKSWEKI EHDL S
Subjt:  IHPTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS

A0A6J1EEQ8 cyclic phosphodiesterase-like

1.9e-104

99.47

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Query:  MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIH
        MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGA RLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIH
Subjt:  MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIH

Query:  PTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS
        PTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS
Subjt:  PTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS

A0A6J1EGC1 cyclic phosphodiesterase-like

1.1e-83

81.15

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Query:  MANPNSAPIEPCEGE--LYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLL
        MANP S PI+P EGE  +YSVWALPPEDV  +I +LM+SLRSEFGGP+FEPHITVVGA RLT  DALNKFRSACEG+KAYQATVD VS GT FYQCVFLL
Subjt:  MANPNSAPIEPCEGE--LYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLL

Query:  IHPTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS
        IHPTT+VV+ SSHCCGHFGY N TPYMPHLSLLYANISDE KK+AKE+A+KL+EA+NGL  P+TRLALYKTDTGDETLKSWEKIAE DLPS
Subjt:  IHPTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS

A0A6J1INY2 cyclic phosphodiesterase-like

9.7e-85

81.68

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Query:  MANPNSAPIEPCEGE--LYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLL
        MANP S  I+P EGE  +YSVWALPPEDV  +I +LM+SLRSEFGGP+FEPHITVVGA RLT  DALNKFRSACEG+KAYQATVD VS GT FYQCVFLL
Subjt:  MANPNSAPIEPCEGE--LYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLL

Query:  IHPTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS
        IHPTT+VV+ SSHCCGHFGY NSTPYMPHLSLLYANISDE KK+AKE+A+KL+EA+NGL  PVTRLALYKTDTGDETLKSWEKIAE DLPS
Subjt:  IHPTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS

A0A6J1KNB2 cyclic phosphodiesterase-like

4.6e-103

98.41

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Query:  MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIH
        MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGA RLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIH
Subjt:  MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIH

Query:  PTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS
        PTTEVVQISSHCCGHFG NNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVP+TRLALYKTDTGDETLKSWEKIAEHDLPS
Subjt:  PTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS

SwissProt top hits

e value

%identity

Alignment

O04147 Cyclic phosphodiesterase

9.1e-48

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Query:  IEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQI
        +E  + ++YSVWALP E+   +   LM +LRSEF GP F PH+TV  +  LT  +A   F SAC+G+KAY ATVD+VS GT F+QCVFLL+  T EV++ 
Subjt:  IEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQI

Query:  SSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIA
          HC  HF  + +TPYMPHLSLLYA +++E KK A+E A  L+ +++GL   + RLAL KTDT D+TL++WE +A
Subjt:  SSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIA

Arabidopsis top hits

e value

%identity

Alignment

AT4G18930.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein

6.5e-49

Show/hide

Query:  IEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQI
        +E  + ++YSVWALP E+   +   LM +LRSEF GP F PH+TV  +  LT  +A   F SAC+G+KAY ATVD+VS GT F+QCVFLL+  T EV++ 
Subjt:  IEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQI

Query:  SSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIA
          HC  HF  + +TPYMPHLSLLYA +++E KK A+E A  L+ +++GL   + RLAL KTDT D+TL++WE +A
Subjt:  SSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIA

AT4G18940.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein

5.5e-40

40.7

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Query:  MANPNSAPIEPC--------EGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVG--ANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTT
        M   N+ P++P         E  +Y++WA+P +DV  ++  LM  LRSEFGGP F+PH+T+VG    +LT  +A   F+SACEG K Y ATVDQVS GT+
Subjt:  MANPNSAPIEPC--------EGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVG--ANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTT

Query:  FYQCVFLLIHPTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS
        ++QC+++ +  T EV+  + H   HF       Y+PH+S+LY ++++  KK+A E A  L+ +++GL   + R+AL+ TD     + SW K+ EH L S
Subjt:  FYQCVFLLIHPTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGAACCCCAATTCCGCCCCGATTGAACCCTGTGAAGGGGAGTTGTATTCGGTGTGGGCTCTTCCTCCAGAAGATGTCGCCACCAAAATCATTTCTCTGATGAGCAG
CCTGAGATCCGAGTTTGGCGGCCCCGAATTTGAGCCGCATATCACCGTGGTTGGGGCAAATCGTCTCACCCCACAGGATGCCCTCAATAAATTCCGATCGGCTTGCGAAG
GGGTCAAGGCTTATCAAGCCACCGTGGATCAAGTTTCCATCGGAACGACCTTCTACCAGTGTGTTTTTCTCCTCATTCATCCCACCACCGAGGTGGTGCAGATCAGCTCA
CATTGCTGCGGCCATTTTGGTTACAACAACTCCACCCCTTACATGCCGCATTTGAGCCTACTATATGCGAACATATCAGATGAAATGAAGAAGCGGGCGAAGGAAATAGC
GGACAAACTGAATGAAGCCGTGAACGGCCTGAAAGTGCCAGTCACTCGACTTGCATTGTACAAAACAGACACAGGCGATGAAACTCTCAAGTCGTGGGAGAAAATTGCAG
AGCACGATCTTCCTTCA

mRNA sequence

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Protein sequence

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MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISS
HCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS

Carg23098 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome