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Carg23164 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23164
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description(6-4)DNA photolyase
Genome locationCarg_Chr08:3445802..3446158
RNA-Seq ExpressionCarg23164
SyntenyCarg23164
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008461069.1 PREDICTED: uncharacterized protein LOC103499770 [Cucumis melo]3.5e-4783.61Show/hide
Query:  MATNLPVFHAAPIRAS---SSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAAD-QPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFH
        MATN  VFH  PIRAS   SSGKS+PNRR AA PKWWSPIFGWSSEPDY+ SSAA+ Q VQNADPELDGGR  S+F PGCFTEEKAKLLRMKTLESSTFH
Subjt:  MATNLPVFHAAPIRAS---SSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAAD-QPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFH

Query:  DIMYHSAIASRLASDLSDRSKE
        DIMYHSAIASRLASDLSDRSK+
Subjt:  DIMYHSAIASRLASDLSDRSKE

XP_022960101.1 uncharacterized protein LOC111460952 [Cucurbita moschata]8.1e-60100Show/hide
Query:  MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMY
        MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMY
Subjt:  MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMY

Query:  HSAIASRLASDLSDRSKE
        HSAIASRLASDLSDRSKE
Subjt:  HSAIASRLASDLSDRSKE

XP_023004861.1 uncharacterized protein LOC111498038 [Cucurbita maxima]2.0e-5898.31Show/hide
Query:  MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMY
        MATNLPVFH APIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNADPELDGGR KSKFLPGCFTEEKAKLLRMKTLESSTFHDIMY
Subjt:  MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMY

Query:  HSAIASRLASDLSDRSKE
        HSAIASRLASDLSDRSKE
Subjt:  HSAIASRLASDLSDRSKE

XP_023514525.1 uncharacterized protein LOC111778781 [Cucurbita pepo subsp. pepo]3.4e-5898.31Show/hide
Query:  MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMY
        MATNLPVFH APIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQ VQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMY
Subjt:  MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMY

Query:  HSAIASRLASDLSDRSKE
        HSAIASRLASDLSDRSKE
Subjt:  HSAIASRLASDLSDRSKE

XP_038898524.1 uncharacterized protein LOC120086132 [Benincasa hispida]9.0e-5187.29Show/hide
Query:  MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMY
        MATNL VFH APIRASSSGKSEPNRRKA APKWWSPIFGWSSEPDY+ SSAA+Q V NA+PEL+GGR +S+F PGCFTEEKAKLLRMKTLESSTFHDIMY
Subjt:  MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMY

Query:  HSAIASRLASDLSDRSKE
        HSAIASRLASDLSDRSK+
Subjt:  HSAIASRLASDLSDRSKE

TrEMBL top hitse value%identityAlignment
A0A0A0K8X0 Uncharacterized protein1.8e-4477.78Show/hide
Query:  MATNLPVFHAAPIRA-------SSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAAD-QPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLES
        MATN  VFH API A       SSSGK +PNR  AAAPKWWSPIFGWSSEPDY+ SSAA+ Q +QNADPEL GGR +S+F PGCFTEEKAKLLRMKT ES
Subjt:  MATNLPVFHAAPIRA-------SSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAAD-QPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLES

Query:  STFHDIMYHSAIASRLASDLSDRSKE
        STFHDIMYHSAIASRLASDLSDRSK+
Subjt:  STFHDIMYHSAIASRLASDLSDRSKE

A0A1S3CEC0 uncharacterized protein LOC1034997701.7e-4783.61Show/hide
Query:  MATNLPVFHAAPIRAS---SSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAAD-QPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFH
        MATN  VFH  PIRAS   SSGKS+PNRR AA PKWWSPIFGWSSEPDY+ SSAA+ Q VQNADPELDGGR  S+F PGCFTEEKAKLLRMKTLESSTFH
Subjt:  MATNLPVFHAAPIRAS---SSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAAD-QPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFH

Query:  DIMYHSAIASRLASDLSDRSKE
        DIMYHSAIASRLASDLSDRSK+
Subjt:  DIMYHSAIASRLASDLSDRSKE

A0A5D3CF29 Uncharacterized protein1.7e-4783.61Show/hide
Query:  MATNLPVFHAAPIRAS---SSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAAD-QPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFH
        MATN  VFH  PIRAS   SSGKS+PNRR AA PKWWSPIFGWSSEPDY+ SSAA+ Q VQNADPELDGGR  S+F PGCFTEEKAKLLRMKTLESSTFH
Subjt:  MATNLPVFHAAPIRAS---SSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAAD-QPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFH

Query:  DIMYHSAIASRLASDLSDRSKE
        DIMYHSAIASRLASDLSDRSK+
Subjt:  DIMYHSAIASRLASDLSDRSKE

A0A6J1H6P9 uncharacterized protein LOC1114609523.9e-60100Show/hide
Query:  MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMY
        MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMY
Subjt:  MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMY

Query:  HSAIASRLASDLSDRSKE
        HSAIASRLASDLSDRSKE
Subjt:  HSAIASRLASDLSDRSKE

A0A6J1KTB2 uncharacterized protein LOC1114980389.7e-5998.31Show/hide
Query:  MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMY
        MATNLPVFH APIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNADPELDGGR KSKFLPGCFTEEKAKLLRMKTLESSTFHDIMY
Subjt:  MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMY

Query:  HSAIASRLASDLSDRSKE
        HSAIASRLASDLSDRSKE
Subjt:  HSAIASRLASDLSDRSKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52720.1 unknown protein8.5e-2350.47Show/hide
Query:  IRASS-SGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASD
        IRASS SG   P++ +  +  WW+P+FG  S+PDY+   ++   V     ++ G     KF  GCFTEEKAK LR KT E+STFHD+MYHSAIASRLASD
Subjt:  IRASS-SGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASD

Query:  LSDRSKE
        ++ R ++
Subjt:  LSDRSKE

AT3G15630.1 unknown protein3.6e-2151.33Show/hide
Query:  MATNLPVFHAAPIRASSSGKSEPNRRK-AAAPKWWSPIFGWSSEPDYIGSSAADQPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIM
        MAT +     + IRASS  +S+P R+K  ++  WW+P+FG SSEPDY+  +       N + +LD    +S  L  C TEEKAK LR KT E+STFHD+M
Subjt:  MATNLPVFHAAPIRASSSGKSEPNRRK-AAAPKWWSPIFGWSSEPDYIGSSAADQPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIM

Query:  YHSAIASRLASDL
        YHSAIASRLASD+
Subjt:  YHSAIASRLASDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACCAATCTTCCCGTTTTCCATGCCGCTCCGATAAGGGCTTCGTCATCTGGAAAATCCGAACCAAATCGCCGGAAGGCTGCCGCGCCAAAGTGGTGGTCACCGAT
CTTCGGATGGTCCTCCGAGCCGGACTACATCGGTTCTTCCGCCGCGGATCAGCCTGTTCAGAATGCCGATCCAGAGCTCGACGGCGGACGACCGAAATCCAAATTCCTGC
CAGGCTGCTTCACGGAGGAGAAGGCAAAACTGCTCCGGATGAAGACGCTGGAGAGCTCTACTTTCCATGACATTATGTATCATTCAGCAATAGCATCGCGCCTCGCCTCC
GATTTGTCGGACCGAAGCAAGGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGACCAATCTTCCCGTTTTCCATGCCGCTCCGATAAGGGCTTCGTCATCTGGAAAATCCGAACCAAATCGCCGGAAGGCTGCCGCGCCAAAGTGGTGGTCACCGAT
CTTCGGATGGTCCTCCGAGCCGGACTACATCGGTTCTTCCGCCGCGGATCAGCCTGTTCAGAATGCCGATCCAGAGCTCGACGGCGGACGACCGAAATCCAAATTCCTGC
CAGGCTGCTTCACGGAGGAGAAGGCAAAACTGCTCCGGATGAAGACGCTGGAGAGCTCTACTTTCCATGACATTATGTATCATTCAGCAATAGCATCGCGCCTCGCCTCC
GATTTGTCGGACCGAAGCAAGGAATAG
Protein sequenceShow/hide protein sequence
MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLAS
DLSDRSKE