CuGenDBv2

Gene ID	Carg23208
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	leukocyte receptor cluster member 1 homolog
Genome location	Carg_Chr15:8041875..8043230
RNA-Seq Expression	Carg23208
Synteny	Carg23208
Gene Ontology terms	NA
InterPro domains	IPR019339 - CBF1-interacting co-repressor CIR, N-terminal domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6579416.1 hypothetical protein SDJN03_23864, partial [Cucurbita argyrosperma subsp. sororia]

4.5e-102

83.86

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Query:  MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG
        MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG
Subjt:  MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG

Query:  GEDGSKKKRMKREEVEKRVITAEDEKYKLGYGVAGKGVKLPWYL-------------------------------------ERRSKDDAESDQNDSSPRV
        GEDGSKKKRMK+EEVEKRVITAEDEKYKLGYGVAGKGVKLPWYL                                     ERRSKDDAESDQNDSS RV
Subjt:  GEDGSKKKRMKREEVEKRVITAEDEKYKLGYGVAGKGVKLPWYL-------------------------------------ERRSKDDAESDQNDSSPRV

Query:  VSENIKKGGKKTLEELRAERLKREQKEKGRERALIAERSGKSGTASRERDSSSR
         SEN+KKGGKKTLEELRAERLKREQKEKGRERALIAERSGKSGTASRERDSSSR
Subjt:  VSENIKKGGKKTLEELRAERLKREQKEKGRERALIAERSGKSGTASRERDSSSR

KAG7016893.1 hypothetical protein SDJN02_22004, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.4e-164

100

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Query:  FPILSHRHRTRKLSFRGFQNFSLNYRSLTTCFPSIYSSSRPNATFNFWVISLRPSQSLINSIGSIYPPRGFFWLPIQVNHNLSFLDLVIMGGHGGLNILP
        FPILSHRHRTRKLSFRGFQNFSLNYRSLTTCFPSIYSSSRPNATFNFWVISLRPSQSLINSIGSIYPPRGFFWLPIQVNHNLSFLDLVIMGGHGGLNILP
Subjt:  FPILSHRHRTRKLSFRGFQNFSLNYRSLTTCFPSIYSSSRPNATFNFWVISLRPSQSLINSIGSIYPPRGFFWLPIQVNHNLSFLDLVIMGGHGGLNILP

Query:  QKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEGGEDGSKKKRMK
        QKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEGGEDGSKKKRMK
Subjt:  QKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEGGEDGSKKKRMK

Query:  REEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSKDDAESDQNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIAERSGKSGTASRE
        REEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSKDDAESDQNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIAERSGKSGTASRE
Subjt:  REEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSKDDAESDQNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIAERSGKSGTASRE

Query:  RDSSSR
        RDSSSR
Subjt:  RDSSSR

XP_022922309.1 leukocyte receptor cluster member 1 homolog [Cucurbita moschata]

5.0e-109

99.54

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Query:  MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG
        MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG
Subjt:  MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG

Query:  GEDGSKKKRMKREEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSKDDAESDQNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIAE
        GEDGSKKKRMKREEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSKDDAESDQNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIAE
Subjt:  GEDGSKKKRMKREEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSKDDAESDQNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIAE

Query:  RSGKSGTASRERDSSSR
        RSGKSGT SRERDSSSR
Subjt:  RSGKSGTASRERDSSSR

XP_022969724.1 leukocyte receptor cluster member 1 homolog [Cucurbita maxima]

3.6e-107

98.16

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Query:  MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG
        MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG
Subjt:  MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG

Query:  GEDGSKKKRMKREEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSKDDAESDQNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIAE
        GEDGSKKKRMK+EEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSKDDAESDQN SS RVVSEN+KKGGKKTLEELRAERLKREQKEKGRERALIAE
Subjt:  GEDGSKKKRMKREEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSKDDAESDQNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIAE

Query:  RSGKSGTASRERDSSSR
        RSGKSGTASRERDSSSR
Subjt:  RSGKSGTASRERDSSSR

XP_023550759.1 leukocyte receptor cluster member 1 homolog [Cucurbita pepo subsp. pepo]

4.2e-108

98.62

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Query:  MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG
        MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG
Subjt:  MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG

Query:  GEDGSKKKRMKREEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSKDDAESDQNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIAE
        GEDGSKKKRMK+EEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSKDDAESDQNDSS RVVSEN+KKGGKKTLEELRAERLKREQKEKGRERALIAE
Subjt:  GEDGSKKKRMKREEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSKDDAESDQNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIAE

Query:  RSGKSGTASRERDSSSR
        RSGKSGTASRERDSSSR
Subjt:  RSGKSGTASRERDSSSR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KKV3 Cir_N domain-containing protein

4.5e-92

86.24

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Query:  MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG
        MGGHGGLNILPQKRWNVYNYENREKV+RDEEAAAKEEQLKREQ RKRDAEFRLEQLRTARG+APVIDT+KPVETDLKPGH+NLFEGIKIFDP+K S+N G
Subjt:  MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG

Query:  GEDGSKKKRMKREEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSK-DDAESDQNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIA
         EDGSKKKRMK+EEVEKRVIT EDEKYKLGYGVAGKGVK+PWYLER +K DD E+ +ND S RV S N+KKG KKTLEELRAERLKREQKEKGRERALIA
Subjt:  GEDGSKKKRMKREEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSK-DDAESDQNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIA

Query:  ERSGKSGTASRERDSSSR
        ERS KSG ASRE D SSR
Subjt:  ERSGKSGTASRERDSSSR

A0A1S3AT65 leukocyte receptor cluster member 1 homolog

2.8e-94

86.64

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Query:  MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG
        MGGHGGLNILPQKRWNVYNYENREKV+RDEEAAAKEEQLKREQ+RKRDAEFRLEQLRTARG+APVIDT+KPVETDLKPGH+NLFEGIKIFDP+K S+N G
Subjt:  MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG

Query:  GEDGSKKKRMKREEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSKDDAESDQNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIAE
         EDGSKKKRMK+EEVEK+VIT EDEKYKLGYGVAGKGVK+PWYLER SKDD E+ +ND S RV + N+KKG KKTLEELRAERLKREQKEKGRERALIAE
Subjt:  GEDGSKKKRMKREEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSKDDAESDQNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIAE

Query:  RSGKSGTASRERDSSSR
        RS KSG ASRE DSSSR
Subjt:  RSGKSGTASRERDSSSR

A0A5A7TDI4 Leukocyte receptor cluster member 1-like protein

2.8e-94

86.64

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Query:  MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG
        MGGHGGLNILPQKRWNVYNYENREKV+RDEEAAAKEEQLKREQ+RKRDAEFRLEQLRTARG+APVIDT+KPVETDLKPGH+NLFEGIKIFDP+K S+N G
Subjt:  MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG

Query:  GEDGSKKKRMKREEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSKDDAESDQNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIAE
         EDGSKKKRMK+EEVEK+VIT EDEKYKLGYGVAGKGVK+PWYLER SKDD E+ +ND S RV + N+KKG KKTLEELRAERLKREQKEKGRERALIAE
Subjt:  GEDGSKKKRMKREEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSKDDAESDQNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIAE

Query:  RSGKSGTASRERDSSSR
        RS KSG ASRE DSSSR
Subjt:  RSGKSGTASRERDSSSR

A0A6J1E3T1 leukocyte receptor cluster member 1 homolog

2.4e-109

99.54

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Query:  MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG
        MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG
Subjt:  MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG

Query:  GEDGSKKKRMKREEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSKDDAESDQNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIAE
        GEDGSKKKRMKREEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSKDDAESDQNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIAE
Subjt:  GEDGSKKKRMKREEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSKDDAESDQNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIAE

Query:  RSGKSGTASRERDSSSR
        RSGKSGT SRERDSSSR
Subjt:  RSGKSGTASRERDSSSR

A0A6J1I3I0 leukocyte receptor cluster member 1 homolog

1.7e-107

98.16

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Query:  MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG
        MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG
Subjt:  MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEG

Query:  GEDGSKKKRMKREEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSKDDAESDQNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIAE
        GEDGSKKKRMK+EEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSKDDAESDQN SS RVVSEN+KKGGKKTLEELRAERLKREQKEKGRERALIAE
Subjt:  GEDGSKKKRMKREEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSKDDAESDQNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIAE

Query:  RSGKSGTASRERDSSSR
        RSGKSGTASRERDSSSR
Subjt:  RSGKSGTASRERDSSSR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G03010.1 Family of unknown function (DUF577)

1.2e-07

43.69

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Query:  VRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEGGEDG--SKKKRM---------KREE
        VR+DEEAAA+EEQ+KRE +RKRDAE RLE LR  RG+AP+    + V       +          D V+   ++GG  G  +KKK+M         KRE 
Subjt:  VRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEGGEDG--SKKKRM---------KREE

Query:  VEK
        VEK
Subjt:  VEK

AT4G16530.1 Family of unknown function (DUF577)

5.6e-50

47.47

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Query:  LDLVIMGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAP--------------------VIDTTKPV---
        L+   MGGHGGLNILPQKRWNVYN++NREKVR++EEAAA+EEQ+KRE++RKRDAE RLE LR  RG+AP                    V+ +T  V   
Subjt:  LDLVIMGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAP--------------------VIDTTKPV---

Query:  --ETDLKPGHLNLFEGIKIFDPVKSSENE--GGEDGSKKKRMKREEVEKRVITAED----------EKYKLGYGVAGKGVKLPWYLERRSKDDAE---SD
            + K GH+NLFEGI+IFDP++  +N+    E+  ++K+M++E       +A+D          EKY+LGYGVAGKGVK PWYLE+R+ ++      D
Subjt:  --ETDLKPGHLNLFEGIKIFDPVKSSENE--GGEDGSKKKRMKREEVEKRVITAED----------EKYKLGYGVAGKGVKLPWYLERRSKDDAE---SD

Query:  QNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIAERSGKSGTASRER
         +       ++  K  GKK+L+ELR ERLKRE+ EK RERAL  ++S ++G  SR R
Subjt:  QNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIAERSGKSGTASRER

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

TTTCCGATTCTTTCACACCGCCACCGGACTCGTAAATTGAGTTTCAGAGGGTTTCAGAATTTCTCTCTGAATTACAGGAGCCTGACGACGTGCTTTCCCTCAATATATTC
AAGCAGCCGCCCTAACGCTACTTTCAATTTTTGGGTAATTTCACTTCGACCTTCTCAATCTCTGATCAATTCAATTGGAAGTATTTATCCGCCCCGCGGCTTCTTCTGGC
TTCCGATTCAGGTGAATCATAATCTTAGTTTCTTAGATTTGGTGATTATGGGGGGTCATGGAGGTTTAAATATTCTTCCCCAAAAGCGATGGAATGTGTACAACTATGAG
AACAGAGAGAAAGTGCGGCGAGATGAAGAAGCTGCAGCCAAAGAAGAACAGCTTAAACGTGAGCAGTCTAGGAAAAGGGATGCTGAGTTTCGTCTCGAGCAGCTTCGTAC
TGCACGGGGTATAGCTCCAGTAATTGACACTACAAAGCCTGTAGAAACAGACCTGAAACCTGGTCACCTAAATCTATTTGAAGGCATCAAGATTTTTGACCCAGTTAAGA
GTTCAGAGAATGAGGGAGGTGAAGATGGGTCTAAGAAGAAGAGGATGAAGAGGGAAGAAGTGGAAAAAAGGGTTATCACAGCTGAAGATGAAAAGTATAAGTTAGGTTAT
GGTGTTGCTGGAAAGGGTGTCAAGTTGCCATGGTACCTTGAGCGGCGTAGCAAGGATGATGCTGAGAGTGATCAAAACGATTCATCCCCAAGAGTAGTGAGCGAAAATAT
AAAAAAAGGAGGAAAAAAGACCTTGGAAGAATTGAGGGCCGAGCGTTTGAAACGAGAGCAGAAGGAGAAGGGAAGGGAGCGTGCTTTAATTGCAGAGAGAAGTGGAAAGA
GTGGAACAGCTTCAAGGGAAAGAGATTCATCATCCAGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

FPILSHRHRTRKLSFRGFQNFSLNYRSLTTCFPSIYSSSRPNATFNFWVISLRPSQSLINSIGSIYPPRGFFWLPIQVNHNLSFLDLVIMGGHGGLNILPQKRWNVYNYE
NREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEGGEDGSKKKRMKREEVEKRVITAEDEKYKLGY
GVAGKGVKLPWYLERRSKDDAESDQNDSSPRVVSENIKKGGKKTLEELRAERLKREQKEKGRERALIAERSGKSGTASRERDSSSR

Carg23208 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome