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Carg23231 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23231
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionvacuolar protein sorting-associated protein 55 homolog
Genome locationCarg_Chr16:8809614..8813167
RNA-Seq ExpressionCarg23231
SyntenyCarg23231
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7015678.1 Vacuolar protein sorting-associated protein 55-like protein [Cucurbita argyrosperma subsp. argyrosperma]4.1e-62100Show/hide
Query:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQILLDQCDEILDRSLDDRKHCHPHHSEACGDHRLGGNGNGPLVVRSIRDCHFVFHGDERRRRLHHVLRYC
        MADLPGSLQACLSMGKVAFLAILVSGGIVLQILLDQCDEILDRSLDDRKHCHPHHSEACGDHRLGGNGNGPLVVRSIRDCHFVFHGDERRRRLHHVLRYC
Subjt:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQILLDQCDEILDRSLDDRKHCHPHHSEACGDHRLGGNGNGPLVVRSIRDCHFVFHGDERRRRLHHVLRYC

Query:  ISMAMKLKLCYLHLVRLLVLFILV
        ISMAMKLKLCYLHLVRLLVLFILV
Subjt:  ISMAMKLKLCYLHLVRLLVLFILV

XP_022155500.1 vacuolar protein sorting-associated protein 55 homolog [Momordica charantia]9.3e-0693.94Show/hide
Query:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL
        MADLPGSLQAC SMGKVAFLAILVSGGIV+QIL
Subjt:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL

XP_022923424.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita moschata]1.9e-06100Show/hide
Query:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL
        MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL
Subjt:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL

XP_022965211.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita maxima]1.9e-06100Show/hide
Query:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL
        MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL
Subjt:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL

XP_038906097.1 vacuolar protein sorting-associated protein 55 homolog [Benincasa hispida]3.2e-0696.97Show/hide
Query:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL
        MADLPGSLQACLSMGKVAFLAILVSGGIV+QIL
Subjt:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL

TrEMBL top hitse value%identityAlignment
A0A1E5VP43 Uncharacterized protein5.9e-0643.24Show/hide
Query:  LPGSLQACLSMGKVAFLAILVSGGIVLQILLDQCDEILDRSLDDRKHCHPHHSEACGDHRLGGNGNGPLVVRSI
        L  S++ CL  G++A LAILVSGGIVLQILL +  EILD  +D  +H +  + +A   H +G   +G +++R +
Subjt:  LPGSLQACLSMGKVAFLAILVSGGIVLQILLDQCDEILDRSLDDRKHCHPHHSEACGDHRLGGNGNGPLVVRSI

A0A5B6YIC4 Uncharacterized protein1.3e-0839.83Show/hide
Query:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQILL-----------------------------DQCDEILDRSLDDRKHCHPHHSEACGDHRLGGNGNGP
        MADLPG + ACL  GK+AFLAILVSGGIVLQIL                              D    +LD S    +HC+  + EAC  + LG  GNG 
Subjt:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQILL-----------------------------DQCDEILDRSLDDRKHCHPHHSEACGDHRLGGNGNGP

Query:  LVVRSIRDCHFVFHGDER
        L++  I   H + + DER
Subjt:  LVVRSIRDCHFVFHGDER

A0A6J1DML0 vacuolar protein sorting-associated protein 55 homolog4.5e-0693.94Show/hide
Query:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL
        MADLPGSLQAC SMGKVAFLAILVSGGIV+QIL
Subjt:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL

A0A6J1E6D1 vacuolar protein sorting-associated protein 55 homolog9.1e-07100Show/hide
Query:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL
        MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL
Subjt:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL

A0A6J1HL31 vacuolar protein sorting-associated protein 55 homolog9.1e-07100Show/hide
Query:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL
        MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL
Subjt:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL

SwissProt top hitse value%identityAlignment
Q9AST6 Vacuolar protein sorting-associated protein 55 homolog7.4e-0678.79Show/hide
Query:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL
        MAD+PG L+ CL MGK+AFLAILVS GIVLQIL
Subjt:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL

Arabidopsis top hitse value%identityAlignment
AT1G32410.1 Vacuolar protein sorting 55 (VPS55) family protein5.3e-0778.79Show/hide
Query:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL
        MAD+PG L+ CL MGK+AFLAILVS GIVLQIL
Subjt:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL

AT1G32410.2 Vacuolar protein sorting 55 (VPS55) family protein5.3e-0778.79Show/hide
Query:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL
        MAD+PG L+ CL MGK+AFLAILVS GIVLQIL
Subjt:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL

AT1G32410.3 Vacuolar protein sorting 55 (VPS55) family protein5.3e-0778.79Show/hide
Query:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL
        MAD+PG L+ CL MGK+AFLAILVS GIVLQIL
Subjt:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL

AT1G32410.4 Vacuolar protein sorting 55 (VPS55) family protein5.3e-0778.79Show/hide
Query:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL
        MAD+PG L+ CL MGK+AFLAILVS GIVLQIL
Subjt:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL

AT1G32410.5 Vacuolar protein sorting 55 (VPS55) family protein5.3e-0778.79Show/hide
Query:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL
        MAD+PG L+ CL MGK+AFLAILVS GIVLQIL
Subjt:  MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGACTTGCCAGGTTCTTTGCAAGCCTGTTTGAGTATGGGGAAGGTGGCATTCTTAGCAATTTTGGTTTCCGGAGGAATTGTGTTGCAGATATTGCTGGATCAATG
CGACGAAATTCTTGACCGGAGCCTCGACGATAGGAAGCATTGCCATCCCCATCATTCTGAAGCATGCGGGGATCATCGGCTGGGGGGCAATGGCAATGGACCTCTCGTCG
TTCGTAGTATTCGTGATTGCCATTTTGTGTTTCATGGGGATGAGCGAAGACGACGGCTACACCATGTTCTGAGATACTGCATCTCCATGGCAATGAAGCTGAAGCTGTGC
TATCTCCATCTGGTGAGGCTTCTTGTTTTGTTCATTCTTGTCTGA
mRNA sequenceShow/hide mRNA sequence
GGGAATCTACTGATATTTTTCCCAGAAAAAAAAAAAAACATATATTCATATTCATCCCAATCCACATTCTTCGACGTCTTGCAATCGGCTTATTTCGTGTTCGATTGAAG
AAATCGTGGGCTGAGACGCCGCGCCGGCGATTGGAATCGAATTGCGAGTCGGGGAAACGTGGAATTTTCTTCGCGAATCCCCCCATTAAAAGCCTTTTTCCTCGATCAGG
TGAGTCCAACCAATGGCAGACTTGCCAGGTTCTTTGCAAGCCTGTTTGAGTATGGGGAAGGTGGCATTCTTAGCAATTTTGGTTTCCGGAGGAATTGTGTTGCAGATATT
GCTGGATCAATGCGACGAAATTCTTGACCGGAGCCTCGACGATAGGAAGCATTGCCATCCCCATCATTCTGAAGCATGCGGGGATCATCGGCTGGGGGGCAATGGCAATG
GACCTCTCGTCGTTCGTAGTATTCGTGATTGCCATTTTGTGTTTCATGGGGATGAGCGAAGACGACGGCTACACCATGTTCTGAGATACTGCATCTCCATGGCAATGAAG
CTGAAGCTGTGCTATCTCCATCTGGTGAGGCTTCTTGTTTTGTTCATTCTTGTCTGAGATTCTCCTACTACATCTGCACATGTTTAATGAAGATCATATATTTCTTCGTT
GGTTTGTTGTTATCTTTGAAGATTTGTTGTTATACCAAAATTGAGATGAGTTCAAGAAGGGGATTGATAGTGTGATCCCAGGTTGTTAGAGTGTAAATGTATATTTGAAA
AGGAATGGGCATTGAACCAGATGTGAATTGTGACTGTTCTTGCCCCATGCTTGGAATGGGATGTATGTGTCTATTTGGTTTATAAATTTTGTGTATGAAACTCTCAATTT
TTTATCTAGTAGATACGTGAATCTTAAAAAGTATCGAAAATTGAGAGGAAATTTGTAGTTTTGAAAGTTTAAAGACTAAAAAGACGTAAATCTCAAAGCTTGGTAGTATA
ATTATTGTATTTTGGTAGTTCTTTTATTTATATCTTTTATATTCTTCCATTTAGATACCATTTTTTAACAATAAGGCTACTTTCCCCCGTAAAATGTCCAAAAAAATTGT
CGGTATTACGAGTGTATATATTTTTAATGTACAAAGAGACACATGTTGATGATGAATTAATACACAAGAGAGATGCGTTGAGAAAATGTGGGTCAAAATTTTGACGTTGA
CGAGAACCCACGTTATTTATTGTGGTTAATTTAGAAGGATTAAGGTTTTCGACATCTTGTCGAAGATGTAGTTGTATCTCTTGGGAGTATGTGTTTTTAGATACGTATAA
TTTGATTTGCATGAACACGAACATATAGGCCAACAGGATTCGTCTAAAACGTGT
Protein sequenceShow/hide protein sequence
MADLPGSLQACLSMGKVAFLAILVSGGIVLQILLDQCDEILDRSLDDRKHCHPHHSEACGDHRLGGNGNGPLVVRSIRDCHFVFHGDERRRRLHHVLRYCISMAMKLKLC
YLHLVRLLVLFILV