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Carg23242 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23242
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionnovel plant SNARE 11-like
Genome locationCarg_Chr16:8903653..8905918
RNA-Seq ExpressionCarg23242
SyntenyCarg23242
Gene Ontology termsGO:0006890 - retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (biological process)
GO:0006906 - vesicle fusion (biological process)
GO:0015031 - protein transport (biological process)
GO:0005789 - endoplasmic reticulum membrane (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0009504 - cell plate (cellular component)
GO:0012507 - ER to Golgi transport vesicle membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0031201 - SNARE complex (cellular component)
GO:0031902 - late endosome membrane (cellular component)
GO:0000149 - SNARE binding (molecular function)
GO:0005484 - SNAP receptor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7015689.1 putative plant SNARE 11 [Cucurbita argyrosperma subsp. argyrosperma]1.8e-44100Show/hide
Query:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
        MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
Subjt:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK

Query:  Q
        Q
Subjt:  Q
XP_022923361.1 novel plant SNARE 11-like [Cucurbita moschata]1.8e-44100Show/hide
Query:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
        MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
Subjt:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK

Query:  Q
        Q
Subjt:  Q
XP_023553230.1 novel plant SNARE 11-like [Cucurbita pepo subsp. pepo]1.8e-44100Show/hide
Query:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
        MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
Subjt:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK

Query:  Q
        Q
Subjt:  Q
XP_031738015.1 novel plant SNARE 11 isoform X1 [Cucumis sativus]3.3e-4192.08Show/hide
Query:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
        MD+L+SISEELADIEGQINDI RALSNGFQKLEKIKD+NRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGN++NTNKMLSE+KQ+MIKELNSYVALKK
Subjt:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK

Query:  Q
        Q
Subjt:  Q
XP_031738016.1 novel plant SNARE 11 isoform X2 [Cucumis sativus]3.3e-4192.08Show/hide
Query:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
        MD+L+SISEELADIEGQINDI RALSNGFQKLEKIKD+NRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGN++NTNKMLSE+KQ+MIKELNSYVALKK
Subjt:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK

Query:  Q
        Q
Subjt:  Q
TrEMBL top hitse value%identityAlignment
A0A0A0L1D9 t-SNARE coiled-coil homology domain-containing protein1.6e-4192.08Show/hide
Query:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
        MD+L+SISEELADIEGQINDI RALSNGFQKLEKIKD+NRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGN++NTNKMLSE+KQ+MIKELNSYVALKK
Subjt:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK

Query:  Q
        Q
Subjt:  Q
A0A1S3BLC3 novel plant SNARE 114.6e-4191.09Show/hide
Query:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
        MD+L+SISEELADIEGQINDI RALSNGFQKLEKIKD+NRRSRQLEELTDKMRECKRLIK+FDREVKDLEGGN++NTNKMLSE+KQ+MIKELNSYVALKK
Subjt:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK

Query:  Q
        Q
Subjt:  Q
A0A5D3CJJ3 Putative plant SNARE 114.6e-4191.09Show/hide
Query:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
        MD+L+SISEELADIEGQINDI RALSNGFQKLEKIKD+NRRSRQLEELTDKMRECKRLIK+FDREVKDLEGGN++NTNKMLSE+KQ+MIKELNSYVALKK
Subjt:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK

Query:  Q
        Q
Subjt:  Q
A0A6J1E6L5 novel plant SNARE 11-like8.9e-45100Show/hide
Query:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
        MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
Subjt:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK

Query:  Q
        Q
Subjt:  Q
A0A6J1HN11 novel plant SNARE 11-like8.9e-45100Show/hide
Query:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
        MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
Subjt:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK

Query:  Q
        Q
Subjt:  Q
SwissProt top hitse value%identityAlignment
Q944A9 Novel plant SNARE 116.0e-3877.23Show/hide
Query:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
        MD ++++SEELA+IEGQINDI RALSNGFQKLEKIKD NR+SRQLEELTDKMR+CK LIKDFDRE+K LE GND++TN+ML++R+Q+M+KELNSYVALKK
Subjt:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK

Query:  Q
        +
Subjt:  Q
Q9LNH6 Novel plant SNARE 123.4e-2560Show/hide
Query:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
        M S   +S  L  I G+I D  RAL+NGFQ+L+KIKD++R+S+QLEEL +KMR+CKRL+K+FDRE+KD E  N    NK L++ KQ+MIKELNSYVAL+K
Subjt:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
Q9LRP1 Novel plant SNARE 138.1e-2763Show/hide
Query:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
        M S   +S +L  I G+I D  RAL+NGFQ+L+KIKD+ R+S+QLEELTDKMRECKRL+K+FDRE+KD E  N    NK L++ KQ+MIKELNSYVAL+K
Subjt:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
Arabidopsis top hitse value%identityAlignment
AT1G48240.1 novel plant snare 122.4e-2660Show/hide
Query:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
        M S   +S  L  I G+I D  RAL+NGFQ+L+KIKD++R+S+QLEEL +KMR+CKRL+K+FDRE+KD E  N    NK L++ KQ+MIKELNSYVAL+K
Subjt:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
AT2G35190.1 novel plant snare 114.2e-3977.23Show/hide
Query:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
        MD ++++SEELA+IEGQINDI RALSNGFQKLEKIKD NR+SRQLEELTDKMR+CK LIKDFDRE+K LE GND++TN+ML++R+Q+M+KELNSYVALKK
Subjt:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK

Query:  Q
        +
Subjt:  Q
AT3G17440.1 novel plant snare 135.7e-2863Show/hide
Query:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
        M S   +S +L  I G+I D  RAL+NGFQ+L+KIKD+ R+S+QLEELTDKMRECKRL+K+FDRE+KD E  N    NK L++ KQ+MIKELNSYVAL+K
Subjt:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
AT3G17440.2 novel plant snare 135.7e-2863Show/hide
Query:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK
        M S   +S +L  I G+I D  RAL+NGFQ+L+KIKD+ R+S+QLEELTDKMRECKRL+K+FDRE+KD E  N    NK L++ KQ+MIKELNSYVAL+K
Subjt:  MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCCTTAGCTTCGATCAGCGAAGAGCTTGCAGATATCGAGGGGCAAATCAATGATATCCTCCGAGCTTTGTCAAATGGATTTCAGAAGTTGGAGAAGATCAAGGA
TACAAATAGGCGGAGTAGACAATTGGAAGAGCTGACTGATAAGATGCGAGAATGTAAGAGGCTTATAAAAGATTTCGATCGAGAAGTCAAGGATTTGGAAGGCGGGAATG
ACTCGAACACTAATAAAATGCTTAGTGAGAGGAAGCAGGCTATGATCAAAGAGTTGAACTCATATGTTGCCCTTAAAAAGCAGTAA
mRNA sequenceShow/hide mRNA sequence
CTTCTTCCCCTCTGTGAACGCAAAGACCTTCGAATTCCAGGAAAAAAACATATACCCAACAACCCCCTGATTTTGTACCATTCAATTGTAAATCTTAGAAAACTAAAAAA
ACCAATCAAATTCATGTTATTTCTGTACAATACATGGAGGTTTTTGTGTAAATCACGAGGTGGAGCTGTTTTTTGTTCTTCCGTATTCCATTTAAGGGGAAGAATCTGAA
AGGATTTGGTTGTTGGGTTTTGTTTTGATCGCTATCTCGGTCTGCATTGTTCAGATCTATCTGAATTCGGGTTTCATTGATTCTGGGTTTATTTGTAGCTGATTCTTTTT
TTGGATTTGTTGGCTGAGGTTTTTAAGTTTTTGATTTGTTTTTTCAATTCGGTGTTTGCGAGAGATGAGGAATGTGTGAAATGGTGATGATCTGATTGTATTCTTTTGTT
GGGTTTTTCGCCATTGATATCAATCAATCAGATTCTTAGAATTTTGGGAGGTAGGTGCTTAAGATCTCGAGGAAACTTTGCGGATTTTAGCTGTTGCAATGCTTGTAATG
TGCCTTAATCTCTGAGGAGGACAAGAATCGGTGTATTTTGTTTCATTGAGGTTTGAATTTGAAGATGGATTCCTTAGCTTCGATCAGCGAAGAGCTTGCAGATATCGAGG
GGCAAATCAATGATATCCTCCGAGCTTTGTCAAATGGATTTCAGAAGTTGGAGAAGATCAAGGATACAAATAGGCGGAGTAGACAATTGGAAGAGCTGACTGATAAGATG
CGAGAATGTAAGAGGCTTATAAAAGATTTCGATCGAGAAGTCAAGGATTTGGAAGGCGGGAATGACTCGAACACTAATAAAATGCTTAGTGAGAGGAAGCAGGCTATGAT
CAAAGAGTTGAACTCATATGTTGCCCTTAAAAAGCAGTAA
Protein sequenceShow/hide protein sequence
MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKKQ