CuGenDBv2

Gene ID	Carg23273
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ATP-dependent DNA helicase
Genome location	Carg_Chr12:10002053..10003964
RNA-Seq Expression	Carg23273
Synteny	Carg23273
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0006268 - DNA unwinding involved in DNA replication (biological process) GO:0005634 - nucleus (cellular component) GO:0005694 - chromosome (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0009378 - four-way junction helicase activity (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0043138 - 3'-5' DNA helicase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6586230.1 ATP-dependent DNA helicase Q-like 1, partial [Cucurbita argyrosperma subsp. sororia]

8.0e-41

85.85

Show/hide

Query:  MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLYVSSAYLFR-DLIENNGISESDVVDFKASRKKDFSRIICMLLNGQGFQSERCKMSMIREKKMK
        MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLY SS    + +L++ +  SESDVVDFKASRKKDFSRIICMLLNGQGFQSERCKMSMI+EKKMK
Subjt:  MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLYVSSAYLFR-DLIENNGISESDVVDFKASRKKDFSRIICMLLNGQGFQSERCKMSMIREKKMK

Query:  EFCELK
        EFCELK
Subjt:  EFCELK

KAG7021064.1 ATP-dependent DNA helicase Q-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.8e-56

100

Show/hide

Query:  MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLYVSSAYLFRDLIENNGISESDVVDFKASRKKDFSRIICMLLNGQGFQSERCKMSMIREKKMKE
        MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLYVSSAYLFRDLIENNGISESDVVDFKASRKKDFSRIICMLLNGQGFQSERCKMSMIREKKMKE
Subjt:  MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLYVSSAYLFRDLIENNGISESDVVDFKASRKKDFSRIICMLLNGQGFQSERCKMSMIREKKMKE

Query:  FCELKLMQTHAP
        FCELKLMQTHAP
Subjt:  FCELKLMQTHAP

XP_022937581.1 ATP-dependent DNA helicase Q-like 1 isoform X1 [Cucurbita moschata]

2.0e-36

77.88

Show/hide

Query:  MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLY-------VSSAYLFRDLIENNGISESDVVDFKASRKKDFSRIICMLLNGQGFQSERCKMSMI
        MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLY       VS  Y  R+   +N        DFKASRKKDFSRIICMLLNGQGFQSERCKMSMI
Subjt:  MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLY-------VSSAYLFRDLIENNGISESDVVDFKASRKKDFSRIICMLLNGQGFQSERCKMSMI

Query:  REKKMKEFCELKL
        REKKMKEFCELK+
Subjt:  REKKMKEFCELKL

XP_022937582.1 ATP-dependent DNA helicase Q-like 1 isoform X2 [Cucurbita moschata]

2.7e-36

78.57

Show/hide

Query:  MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLY-------VSSAYLFRDLIENNGISESDVVDFKASRKKDFSRIICMLLNGQGFQSERCKMSMI
        MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLY       VS  Y  R+   +N        DFKASRKKDFSRIICMLLNGQGFQSERCKMSMI
Subjt:  MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLY-------VSSAYLFRDLIENNGISESDVVDFKASRKKDFSRIICMLLNGQGFQSERCKMSMI

Query:  REKKMKEFCELK
        REKKMKEFCELK
Subjt:  REKKMKEFCELK

XP_038890742.1 ATP-dependent DNA helicase Q-like 1 isoform X1 [Benincasa hispida]

1.7e-06

39.56

Show/hide

Query:  SLAADFGFDEELAQACLEWIINLYVSSAYLFRDLIENNGISESDVVDFKASRKKDFSRIICMLLNGQGFQSERCKMSMIREKKMKEFCELK
        ++A   G D+   +  +   ++  + S Y        +G   S +V +   +KKDFSR++CML NGQGF+SE  KMSM + KKM++FCELK
Subjt:  SLAADFGFDEELAQACLEWIINLYVSSAYLFRDLIENNGISESDVVDFKASRKKDFSRIICMLLNGQGFQSERCKMSMIREKKMKEFCELK

XP_038890742.1 ATP-dependent DNA helicase Q-like 1 isoform X1 [Benincasa hispida]

2.4e-05

73.68

Show/hide

Query:  MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLY
        MGGHD+E ER RL SLAA+ GFDEE A+ACL+ IINLY
Subjt:  MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLY

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DRT1 ATP-dependent DNA helicase

6.9e-06

Show/hide

Query:  RKKDFSRIICMLLNGQGFQSERCKMSMIREKKMKEFCELK
        +KKDFSR++CML NG+GF+SE  K+SM + KKM++FCELK
Subjt:  RKKDFSRIICMLLNGQGFQSERCKMSMIREKKMKEFCELK

A0A6J1FAR0 ATP-dependent DNA helicase Q-like 1 isoform X1

9.9e-37

77.88

Show/hide

Query:  MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLY-------VSSAYLFRDLIENNGISESDVVDFKASRKKDFSRIICMLLNGQGFQSERCKMSMI
        MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLY       VS  Y  R+   +N        DFKASRKKDFSRIICMLLNGQGFQSERCKMSMI
Subjt:  MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLY-------VSSAYLFRDLIENNGISESDVVDFKASRKKDFSRIICMLLNGQGFQSERCKMSMI

Query:  REKKMKEFCELKL
        REKKMKEFCELK+
Subjt:  REKKMKEFCELKL

A0A6J1FBL8 ATP-dependent DNA helicase Q-like 1 isoform X2

1.3e-36

78.57

Show/hide

Query:  MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLY-------VSSAYLFRDLIENNGISESDVVDFKASRKKDFSRIICMLLNGQGFQSERCKMSMI
        MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLY       VS  Y  R+   +N        DFKASRKKDFSRIICMLLNGQGFQSERCKMSMI
Subjt:  MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLY-------VSSAYLFRDLIENNGISESDVVDFKASRKKDFSRIICMLLNGQGFQSERCKMSMI

Query:  REKKMKEFCELK
        REKKMKEFCELK
Subjt:  REKKMKEFCELK

A0A6J1G2P3 ATP-dependent DNA helicase

1.4e-06

38.46

Show/hide

Query:  SLAADFGFDEELAQACLEWIINLYVSSAYLFRDLIENNGISESDVVDFKASRKKDFSRIICMLLNGQGFQSERCKMSMIREKKMKEFCELK
        ++A   G D+   +  +   ++  + S Y        +G   S +V +   +KKDFSR++CML NGQGF+SE  K+SM + KKM++FCELK
Subjt:  SLAADFGFDEELAQACLEWIINLYVSSAYLFRDLIENNGISESDVVDFKASRKKDFSRIICMLLNGQGFQSERCKMSMIREKKMKEFCELK

A0A6J1G2P3 ATP-dependent DNA helicase

1.2e-05

73.68

Show/hide

Query:  MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLY
        MGGHD+E ERARL SLAA+ GFDEE A+ACL  +INLY
Subjt:  MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLY

A0A6J1G2P3 ATP-dependent DNA helicase

1.8e-06

38.46

Show/hide

Query:  SLAADFGFDEELAQACLEWIINLYVSSAYLFRDLIENNGISESDVVDFKASRKKDFSRIICMLLNGQGFQSERCKMSMIREKKMKEFCELK
        ++A   G D+   +  +   ++  + S Y        +G   S +V +   +KKDFSR++CML NGQGF+SE  K+SM + KKM++FCELK
Subjt:  SLAADFGFDEELAQACLEWIINLYVSSAYLFRDLIENNGISESDVVDFKASRKKDFSRIICMLLNGQGFQSERCKMSMIREKKMKEFCELK

A0A6J1KGC2 ATP-dependent DNA helicase

6.9e-06

73.68

Show/hide

Query:  MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLY
        MGGHD+E ERARL SLAA+ GFDEE A+ACL+ +INLY
Subjt:  MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLY

A0A6J1KGC2 ATP-dependent DNA helicase

2.4e-06

76.32

Show/hide

Query:  MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLY
        MGGHD+E ER RL SLAA+FGFDEE A+ACL+ IINLY
Subjt:  MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLY

SwissProt top hits

e value

%identity

Alignment

Q9FT74 ATP-dependent DNA helicase Q-like 1

1.0e-06

Show/hide

Query:  ERARLRSLAADFGFDEELAQACLEWIINLYVSSAYLFRDLIENNGISESDVVDFKA---SRKKDFSRIICMLLNGQGFQSERCKMSMIREKKMKEFCELK
        +   +R + A   F   + +A + ++I+  +S A       + +G +  D +  +     +KKDFSR++CML NGQG   +R K +M + KKM+++CELK
Subjt:  ERARLRSLAADFGFDEELAQACLEWIINLYVSSAYLFRDLIENNGISESDVVDFKA---SRKKDFSRIICMLLNGQGFQSERCKMSMIREKKMKEFCELK

Arabidopsis top hits

e value

%identity

Alignment

AT3G05740.1 RECQ helicase l1

7.3e-08

Show/hide

Query:  ERARLRSLAADFGFDEELAQACLEWIINLYVSSAYLFRDLIENNGISESDVVDFKA---SRKKDFSRIICMLLNGQGFQSERCKMSMIREKKMKEFCELK
        +   +R + A   F   + +A + ++I+  +S A       + +G +  D +  +     +KKDFSR++CML NGQG   +R K +M + KKM+++CELK
Subjt:  ERARLRSLAADFGFDEELAQACLEWIINLYVSSAYLFRDLIENNGISESDVVDFKA---SRKKDFSRIICMLLNGQGFQSERCKMSMIREKKMKEFCELK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGCGGTCACGACATGGAAAAGGAGAGAGCTCGGTTGCGAAGCTTGGCCGCCGATTTTGGTTTCGATGAAGAATTGGCGCAGGCCTGCTTGGAATGGATAATCAATCT
CTACGTTTCCTCTGCTTATCTGTTTCGCGATCTGATTGAGAACAACGGAATATCTGAAAGTGATGTTGTTGATTTCAAAGCTTCAAGGAAAAAGGATTTCAGCCGCATCA
TATGCATGTTACTTAATGGACAAGGATTTCAAAGTGAAAGATGTAAGATGTCAATGATTCGGGAAAAGAAAATGAAAGAGTTCTGTGAACTTAAGTTGATGCAAACTCAT
GCTCCTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGGHDMEKERARLRSLAADFGFDEELAQACLEWIINLYVSSAYLFRDLIENNGISESDVVDFKASRKKDFSRIICMLLNGQGFQSERCKMSMIREKKMKEFCELKLMQTH
AP

Carg23273 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome