| GenBank top hits | e value | %identity | Alignment |
|---|
| KAG6592199.1 hypothetical protein SDJN03_14545, partial [Cucurbita argyrosperma subsp. sororia] | 1.2e-64 | 100 | Show/hide |
Query: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
Subjt: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
Query: RGFDDGAKAASGGRGKGSSGGKLGANR
RGFDDGAKAASGGRGKGSSGGKLGANR
Subjt: RGFDDGAKAASGGRGKGSSGGKLGANR
|
|
| KAG7025056.1 hypothetical protein SDJN02_13879, partial [Cucurbita argyrosperma subsp. argyrosperma] | 3.1e-86 | 100 | Show/hide |
Query: YIISVLQQLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPG
YIISVLQQLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPG
Subjt: YIISVLQQLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPG
Query: GRPSKGMGRGFDDGAKAASGGRGKGSSGGKLGANRDTSNNANVPYSRVMMPVAMGDYGKRIDS
GRPSKGMGRGFDDGAKAASGGRGKGSSGGKLGANRDTSNNANVPYSRVMMPVAMGDYGKRIDS
Subjt: GRPSKGMGRGFDDGAKAASGGRGKGSSGGKLGANRDTSNNANVPYSRVMMPVAMGDYGKRIDS
|
|
| XP_022936003.1 sm-like protein LSM4 [Cucurbita moschata] | 1.2e-64 | 100 | Show/hide |
Query: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
Subjt: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
Query: RGFDDGAKAASGGRGKGSSGGKLGANR
RGFDDGAKAASGGRGKGSSGGKLGANR
Subjt: RGFDDGAKAASGGRGKGSSGGKLGANR
|
|
| XP_022975088.1 sm-like protein LSM4 isoform X1 [Cucurbita maxima] | 2.2e-63 | 98.43 | Show/hide |
Query: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
Subjt: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
Query: RGFDDGAKAASGGRGKGSSGGKLGANR
RGFDDGAKAASGGRGKG SGGK GANR
Subjt: RGFDDGAKAASGGRGKGSSGGKLGANR
|
|
| XP_023535667.1 sm-like protein LSM4 [Cucurbita pepo subsp. pepo] | 3.4e-64 | 99.21 | Show/hide |
Query: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
Subjt: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
Query: RGFDDGAKAASGGRGKGSSGGKLGANR
RGFDDGAKAASGGRGKG SGGKLGANR
Subjt: RGFDDGAKAASGGRGKGSSGGKLGANR
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A1S3BYD6 U6 snRNA-associated Sm-like protein LSm4 | 4.9e-61 | 95.28 | Show/hide |
Query: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSR DRKP GVGRGRGRGREDGPGGRP+KGMG
Subjt: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
Query: RGFDDGAKAASGGRGKGSSGGKLGANR
RGFDDGAKAASGGRGKG GGK GANR
Subjt: RGFDDGAKAASGGRGKGSSGGKLGANR
|
|
| A0A6J1EHL8 U6 snRNA-associated Sm-like protein LSm4 | 7.6e-62 | 95.28 | Show/hide |
Query: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETK+R DRKPPGVGRGRGRGREDGPGGRP+KGMG
Subjt: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
Query: RGFDDGAKAASGGRGKGSSGGKLGANR
RGFDDGAKAASGGRGKG GGK GANR
Subjt: RGFDDGAKAASGGRGKGSSGGKLGANR
|
|
| A0A6J1FCD9 U6 snRNA-associated Sm-like protein LSm4 | 5.6e-65 | 100 | Show/hide |
Query: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
Subjt: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
Query: RGFDDGAKAASGGRGKGSSGGKLGANR
RGFDDGAKAASGGRGKGSSGGKLGANR
Subjt: RGFDDGAKAASGGRGKGSSGGKLGANR
|
|
| A0A6J1ID83 U6 snRNA-associated Sm-like protein LSm4 | 1.1e-63 | 98.43 | Show/hide |
Query: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
Subjt: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
Query: RGFDDGAKAASGGRGKGSSGGKLGANR
RGFDDGAKAASGGRGKG SGGK GANR
Subjt: RGFDDGAKAASGGRGKGSSGGKLGANR
|
|
| A0A6J1J2N4 U6 snRNA-associated Sm-like protein LSm4 | 7.6e-62 | 95.28 | Show/hide |
Query: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETK+R DRKPPGVGRGRGRGREDGPGGRP+KGMG
Subjt: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
Query: RGFDDGAKAASGGRGKGSSGGKLGANR
RGFDDGAKAASGGRGKG GGK GANR
Subjt: RGFDDGAKAASGGRGKGSSGGKLGANR
|
|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| F4K4E3 Sm-like protein LSM4 | 2.5e-46 | 77.17 | Show/hide |
Query: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEE K+RTDRKPPGVGRGRGRG +DG
Subjt: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
Query: RGFDDGAKAASGGRGKGSSGGKLGANR
GA+ GRG+G+S GK+G NR
Subjt: RGFDDGAKAASGGRGKGSSGGKLGANR
|
|
| Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 | 1.0e-31 | 59.5 | Show/hide |
Query: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
LVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECYIRG+TIKYLR+PDE+ID V+EE V +GRGRG + + G
Subjt: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
Query: RGFDDGAKAASGGRGKGSSGG
RG + GGRG+G G
Subjt: RGFDDGAKAASGGRGKGSSGG
|
|
| Q43582 Probable U6 snRNA-associated Sm-like protein LSm4 | 7.1e-49 | 80.8 | Show/hide |
Query: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGR-GREDGPGGRPSKGM
LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY+RGNTIKYLRVPDEVIDKVQEE KSRTDRKPPGVGR R R GR+D GR KG+
Subjt: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGR-GREDGPGGRPSKGM
Query: GRGFDDGAKAASGGRGKGSSGGKLG
GRG DDG + GRGKG K G
Subjt: GRGFDDGAKAASGGRGKGSSGGKLG
|
|
| Q9LGE6 Probable U6 snRNA-associated Sm-like protein LSm4 | 9.3e-49 | 81.75 | Show/hide |
Query: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEET-KSRTDRKPPGVGRGRGRGR-EDGPGGRPSKG
LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECYIRGNTIKYLRVPDEVIDKVQEET KSR+DR+PPGVGRGRGRG PGGR G
Subjt: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEET-KSRTDRKPPGVGRGRGRGR-EDGPGGRPSKG
Query: MGRGFDDGAKAASGGRGKGSSGGKLG
+GRG DDG GGRG+G GGK G
Subjt: MGRGFDDGAKAASGGRGKGSSGGKLG
|
|
| Q9ZRU9 Probable U6 snRNA-associated Sm-like protein LSm4 | 1.6e-48 | 80.8 | Show/hide |
Query: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
LVELK+GETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMP+CYIRGNTIKYLRVPDEVIDKVQEETKSR DRKPPGVGRGRGRGRE+G G R +G G
Subjt: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
Query: RG-FDDGAKAASGGRGKGSSGGKLG
R AKA RG+G+S GK G
Subjt: RG-FDDGAKAASGGRGKGSSGGKLG
|
|
| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT1G20580.1 Small nuclear ribonucleoprotein family protein | 6.2e-08 | 32.77 | Show/hide |
Query: VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD-----EVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPS
VELK+GE Y G ++ C+ N L ++ T+KDG + ++ +IRG+ ++++ +PD + ++ K ++ GVGRGRG R G+P+
Subjt: VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD-----EVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPS
Query: KGMGRGFDDGAKAASGGRG
G GRG +GGRG
Subjt: KGMGRGFDDGAKAASGGRG
|
|
| AT1G76300.1 snRNP core protein SMD3 | 6.9e-07 | 31.3 | Show/hide |
Query: VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVID-KVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
VE+K+GE Y G ++ C+ N L + T+KDG + ++ +IRG+ +++L +PD + + + ++ + + GVGRGRG +KG G
Subjt: VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVID-KVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
Query: RGFDDGAKAASGGRG
RG GGRG
Subjt: RGFDDGAKAASGGRG
|
|
| AT4G02840.1 Small nuclear ribonucleoprotein family protein | 6.2e-08 | 40.59 | Show/hide |
Query: VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE-------VIDKVQEETKSRTDRK-PPGVGRGRGRGREDGPGG
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD V D + + K T K P G GRGRGRGR G GG
Subjt: VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE-------VIDKVQEETKSRTDRK-PPGVGRGRGRGREDGPGG
Query: R
R
Subjt: R
|
|
| AT4G02840.2 Small nuclear ribonucleoprotein family protein | 1.3e-05 | 36.94 | Show/hide |
Query: VELKNGETYNGHLVN----------CDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE-------VIDKVQEETKSRTDRK-PPGVGRGR
+ELKNG +G + + D MN HL+ V T K G + +RGN I+Y +PD V D + + K T K P G GRGR
Subjt: VELKNGETYNGHLVN----------CDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE-------VIDKVQEETKSRTDRK-PPGVGRGR
Query: GRGREDGPGGR
GRGR G GGR
Subjt: GRGREDGPGGR
|
|
| AT5G27720.1 Small nuclear ribonucleoprotein family protein | 1.8e-47 | 77.17 | Show/hide |
Query: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEE K+RTDRKPPGVGRGRGRG +DG
Subjt: LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMG
Query: RGFDDGAKAASGGRGKGSSGGKLGANR
GA+ GRG+G+S GK+G NR
Subjt: RGFDDGAKAASGGRGKGSSGGKLGANR
|
|
