; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg23330 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23330
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 65 kDa protein
Genome locationCarg_Chr06:10446964..10456149
RNA-Seq ExpressionCarg23330
SyntenyCarg23330
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0030626 - U12 snRNA binding (molecular function)
GO:0097157 - pre-mRNA intronic binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597718.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein, partial [Cucurbita argyrosperma subsp. sororia]4.9e-15199.65Show/hide
Query:  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET
        MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET
Subjt:  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET

Query:  VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNL
        VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGK DDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNL
Subjt:  VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNL

Query:  AKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKGVKVGS
        AKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKGVKVGS
Subjt:  AKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKGVKVGS

KAG7029165.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita argyrosperma subsp. argyrosperma]5.8e-152100Show/hide
Query:  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET
        MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET
Subjt:  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET

Query:  VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNL
        VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNL
Subjt:  VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNL

Query:  AKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKGVKVGS
        AKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKGVKVGS
Subjt:  AKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKGVKVGS

XP_022932769.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita moschata]3.0e-14898.25Show/hide
Query:  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET
        MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITN+SSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET
Subjt:  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET

Query:  VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNL
        VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHD KQEGK DDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNL
Subjt:  VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNL

Query:  AKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKGVKVGS
        AKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQ ALNLVNGYVFKGKPMIIQFGR+PGAAKGVKVGS
Subjt:  AKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKGVKVGS

XP_022972081.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita maxima]4.3e-14798.93Show/hide
Query:  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET
        MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITN+SSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET
Subjt:  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET

Query:  VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNL
        VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHD KQEGK DDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNL
Subjt:  VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNL

Query:  AKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG
        AKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG
Subjt:  AKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG

XP_023540623.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita pepo subsp. pepo]9.5e-14798.93Show/hide
Query:  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET
        MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITN+SSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET
Subjt:  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET

Query:  VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNL
        VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVV DGKQEGK DDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNL
Subjt:  VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNL

Query:  AKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG
        AKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG
Subjt:  AKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG

TrEMBL top hitse value%identityAlignment
A0A0A0KCT1 RRM domain-containing protein9.1e-11185.94Show/hide
Query:  MNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHE
        MNKMNIPAPFRLPLPTPPLPPS+PAPPS SLTLPPLPPP T R Q+TN+ SDESEMESSEEDVEGKYN SGVSKTA+SG KR RCE IVGPGIDKDVAHE
Subjt:  MNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHE

Query:  TVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKN
         VGVKPSTLVPKEIPMIKKKNPV Q +IAPKV+HDGK      +INN+ EE EKEA DLK YATLEDLERGKLPPEEILSLPMFKNYTAG+PTSVLYIKN
Subjt:  TVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKN

Query:  LAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHAL
        LAKDV+NDDLYYIFGSLF GIDEAKSALTVKLMQEGRMRGQAFVT PS+ELAQ AL
Subjt:  LAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHAL

A0A1S3BJY8 U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X22.6e-12687.59Show/hide
Query:  MNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHE
        MNKMNIPAPFRLPLPTPPLPPS PAPPS SLTLPPLPPPAT R Q+TN+ SDESEMESSEEDVEGKYNSSGVSKTA+SG KR RCE IVGPGIDKDVAHE
Subjt:  MNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHE

Query:  TVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKN
         VGVKPSTLVPKEIPMIKKKNPV Q +IAPKV+HDGK     D  NN+ E  EKEA DLK YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKN
Subjt:  TVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKN

Query:  LAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG
        LAKDV+NDDLYYIFGSLF GIDEAKSALTVKLMQEGRMRGQAFVT PS+ELAQ ALNLVNGYVFKGKPMIIQFGRNPGA KG
Subjt:  LAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG

A0A6J1DFW4 U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X12.2e-12888.3Show/hide
Query:  MNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHE
        MNKMNIPAPFRLPLPTPPLPPS+PAPPS SLTLPP P P TPRP +TN+SSDESEMESSEE+VEGKY+SSGVSKTA+ GNKRSRCE IVGPGIDKDVAHE
Subjt:  MNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHE

Query:  TVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKN
         VGVKPS LVPKEIPMI KKNPVFQ KI PKV+HDGK     D INNE+EE EKE  DLK YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKN
Subjt:  TVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKN

Query:  LAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG
        LAKDVVNDDLYYIFGSLFGGID+AKSALTVKLMQEGRMRGQAFVT PS+ELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG
Subjt:  LAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG

A0A6J1EXB4 U11/U12 small nuclear ribonucleoprotein 65 kDa protein1.4e-14898.25Show/hide
Query:  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET
        MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITN+SSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET
Subjt:  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET

Query:  VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNL
        VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHD KQEGK DDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNL
Subjt:  VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNL

Query:  AKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKGVKVGS
        AKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQ ALNLVNGYVFKGKPMIIQFGR+PGAAKGVKVGS
Subjt:  AKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKGVKVGS

A0A6J1I4Z6 U11/U12 small nuclear ribonucleoprotein 65 kDa protein2.1e-14798.93Show/hide
Query:  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET
        MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITN+SSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET
Subjt:  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET

Query:  VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNL
        VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHD KQEGK DDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNL
Subjt:  VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNL

Query:  AKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG
        AKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG
Subjt:  AKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG

SwissProt top hitse value%identityAlignment
F1Q8J0 RNA-binding region-containing protein 33.8e-2133.02Show/hide
Query:  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQ-ITNVSSDESEMES-SEEDVEGKYNSSGVSK-------TARSGNKRSRCEAIVGPG
        MNKMN+P+PFR P+  PP    +P+ P     PP PP   P P+   + S +ESE ES  EE+ E      G+           ++ +KR + +      
Subjt:  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQ-ITNVSSDESEMES-SEEDVEGKYNSSGVSK-------TARSGNKRSRCEAIVGPG

Query:  IDKDVAHETVG--VKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKG------------DDINNEV---------------------EETEKEAA
        I K  +H   G  ++P+ +  +   + +KK    +F I+ +V      EG G            D  + EV                     EE ++E  
Subjt:  IDKDVAHETVG--VKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKG------------DDINNEV---------------------EETEKEAA

Query:  DLKS-YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFG-GIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHA
        D+ S + +  +LERG+L  +EI  L +FK Y  G PT  LY+KN+AK V   DL +I+G       +E ++   + LM+EGRM+GQAF+ LPS   AQ A
Subjt:  DLKS-YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFG-GIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHA

Query:  LNLVNGYVFKGKPMIIQFGRN
        L   NGYV K KP+++QF R+
Subjt:  LNLVNGYVFKGKPMIIQFGRN

Q4G055 RNA-binding region-containing protein 31.9e-2030.58Show/hide
Query:  MNKMNIPAPFRLPLPTP-----------PLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNS-----------SGVSKTARSG
        MNKMN+P PF      P           PLPP+ P PP     PPLP       +  ++SS ESE ESS+E+   + N                K     
Subjt:  MNKMNIPAPFRLPLPTP-----------PLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNS-----------SGVSKTARSG

Query:  NKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKV---------VHDGKQEGKG-------DDIN------------NEVEE
         KR   + +  P       H    + PS +  +  P+  KK    +F I+  V              +E          DD N            N  EE
Subjt:  NKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKV---------VHDGKQEGKG-------DDIN------------NEVEE

Query:  TEKEAADLKS-YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSAL-TVKLMQEGRMRGQAFVTLPSV
         ++++ ++ S + +  +LE+G++  EE+ +L +F++Y  G P   +Y+KNLA+ V   DL +IFG       E +  +  ++LM+EGRM+GQAFV LP+ 
Subjt:  TEKEAADLKS-YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSAL-TVKLMQEGRMRGQAFVTLPSV

Query:  ELAQHALNLVNGYVFKGKPMIIQFGRN
        + A  AL   NGYV  GKPM++QF R+
Subjt:  ELAQHALNLVNGYVFKGKPMIIQFGRN

Q5R6C7 RNA-binding region-containing protein 36.4e-2130.3Show/hide
Query:  MNKMNIPAPF-----RLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRP-QITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRC---EAIVGPG
        MNKMN+P PF     R P+    +P   P PP+S    P PP   P P +   +SS+ESE ES++++   + N   + + A    KR +      +    
Subjt:  MNKMNIPAPF-----RLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRP-QITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRC---EAIVGPG

Query:  IDKDVAHETVGVKPSTLVPKEIP--MIKKKNPV----FQFKIAPKV----VHDGKQEGKGDDINNEVEETEKEAADL-----------------------
          KD+ +  +    S+L P  +P  +  +  PV     +F I+  +      D ++E   ++ N+++  TE +A+++                       
Subjt:  IDKDVAHETVGVKPSTLVPKEIP--MIKKKNPV----FQFKIAPKV----VHDGKQEGKGDDINNEVEETEKEAADL-----------------------

Query:  --KSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSAL-TVKLMQEGRMRGQAFVTLPSVELAQHAL
              +  +LE+G++  EE+ +L +F++Y  G P   +Y+KNLAK V   DL YIFG       E +  +  ++LM+EGRM+GQAFV LP+ + A  AL
Subjt:  --KSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSAL-TVKLMQEGRMRGQAFVTLPSVELAQHAL

Query:  NLVNGYVFKGKPMIIQFGRNPGAAKGVKVG
           NGYV  GKPM++QF R+    +  K G
Subjt:  NLVNGYVFKGKPMIIQFGRNPGAAKGVKVG

Q8RWV8 U11/U12 small nuclear ribonucleoprotein 65 kDa protein7.8e-7557.65Show/hide
Query:  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET
        MNKMN+P PFRL LPTPPLP + P                 +  + + SS ESEMES E+             T++SG KR+R   +VG G+DKDV HET
Subjt:  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET

Query:  VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDG-KQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKN
        VGVKPS+L PKEIP I+K   V Q KI  KV  D  K+E + +D     +E +++ ++LK +A+LE+LE+G+LPP++ILSLPMFKNYTAG+P+ VLYIKN
Subjt:  VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDG-KQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKN

Query:  LAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK
        LAKDVV DD YYIFGS F   + AKS+L V+LMQEGRMRGQAF+T PSVE+A  ALNLVNG+VFKGKPMIIQFGR PGAAK
Subjt:  LAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK

Q96LT9 RNA-binding region-containing protein 31.1e-2030Show/hide
Query:  MNKMNIPAPF-----RLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRP-QITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRC---EAIVGPG
        MNKMN+P PF     R P+    +P   P PP+S    P PP   P P +   +SS+ESE ES++++   + N   + + A    KR +      +    
Subjt:  MNKMNIPAPF-----RLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRP-QITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRC---EAIVGPG

Query:  IDKDVAHETVGVKPSTLVPKEIP--MIKKKNPV----FQFKIAPKV----VHDGKQEGKGDDINNEVEETEKEAADL-----------------------
          KD+ +  +    S+L P  +P  +  +  PV     +F I+  +      D ++E   ++ N+++  TE +A+++                       
Subjt:  IDKDVAHETVGVKPSTLVPKEIP--MIKKKNPV----FQFKIAPKV----VHDGKQEGKGDDINNEVEETEKEAADL-----------------------

Query:  --KSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSAL-TVKLMQEGRMRGQAFVTLPSVELAQHAL
              +  +LE+G++  EE+ +L +F++Y  G P   +Y+KNLAK V   DL YIFG       E +  +  ++LM+EGRM+GQAF+ LP+ + A  AL
Subjt:  --KSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSAL-TVKLMQEGRMRGQAFVTLPSVELAQHAL

Query:  NLVNGYVFKGKPMIIQFGRNPGAAKGVKVG
           NGYV  GKPM++QF R+    +  K G
Subjt:  NLVNGYVFKGKPMIIQFGRNPGAAKGVKVG

Arabidopsis top hitse value%identityAlignment
AT1G09230.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.5e-7657.65Show/hide
Query:  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET
        MNKMN+P PFRL LPTPPLP + P                 +  + + SS ESEMES E+             T++SG KR+R   +VG G+DKDV HET
Subjt:  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHET

Query:  VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDG-KQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKN
        VGVKPS+L PKEIP I+K   V Q KI  KV  D  K+E + +D     +E +++ ++LK +A+LE+LE+G+LPP++ILSLPMFKNYTAG+P+ VLYIKN
Subjt:  VGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDG-KQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKN

Query:  LAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK
        LAKDVV DD YYIFGS F   + AKS+L V+LMQEGRMRGQAF+T PSVE+A  ALNLVNG+VFKGKPMIIQFGR PGAAK
Subjt:  LAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK

AT2G30260.1 U2 small nuclear ribonucleoprotein B6.6e-0532.18Show/hide
Query:  PTSVLYIKNLAKDVVNDDL---YYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGR
        P   +YI+NL + +  ++L    Y   S FG I      L V  ++  ++RGQA+VT   V  A HA+  +  + F  KPM +Q+ +
Subjt:  PTSVLYIKNLAKDVVNDDL---YYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAAGATGAACATTCCAGCTCCATTCCGATTGCCTCTACCCACTCCACCTCTCCCACCTTCCGTTCCTGCACCACCGTCATCACTAACATTGCCACCACTTCCTCC
TCCTGCCACTCCAAGGCCTCAAATAACAAATGTGTCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGATGTGGAAGGAAAATATAATTCAAGTGGAGTCTCAAAAA
CTGCAAGATCAGGAAACAAGCGGTCTAGGTGTGAAGCAATTGTAGGCCCCGGGATAGACAAAGATGTGGCTCATGAGACTGTTGGGGTGAAACCTTCCACATTGGTCCCC
AAAGAGATTCCGATGATAAAAAAGAAAAACCCAGTGTTTCAGTTTAAAATTGCCCCTAAGGTGGTTCATGACGGAAAGCAGGAAGGAAAGGGGGATGATATTAATAATGA
GGTCGAAGAGACAGAAAAGGAAGCAGCAGATCTTAAATCCTATGCAACACTCGAAGATTTAGAGAGAGGTAAATTGCCTCCAGAAGAAATTCTATCACTTCCAATGTTCA
AGAACTATACTGCTGGGAGTCCTACTTCGGTGCTGTATATTAAGAACTTAGCCAAAGATGTAGTGAATGATGACCTCTACTATATATTTGGATCATTATTTGGAGGTATT
GATGAAGCCAAATCTGCTCTCACTGTGAAGCTAATGCAGGAGGGAAGAATGAGGGGCCAAGCATTTGTTACACTTCCATCAGTTGAACTTGCGCAACATGCTTTGAATCT
AGTAAATGGTTACGTATTCAAAGGCAAGCCAATGATTATCCAGTTTGGACGCAATCCAGGAGCTGCCAAGGGAGTTAAAGTCGGCTCCTAG
mRNA sequenceShow/hide mRNA sequence
TGTTGTTGTGTTGATTCGATTCATTTTCTTCAAAATACTGTAGGTTCTTGATTACCCACTGTTATTGATCTGATTGAAATTGTTTGTTCTTTACCAAGTTTCTATGGAGA
CAATTGTATTTGGTTGTACATTTGTTAAAATTTGGTAAACACTTTTTTAGGTATGCTTATCCTCCTCCAGATGGCAATATCCTGACCAACATCGTTAATGCCCTCATAGC
TGTCCCACGCTTTTATACACAGGTGTTGCATTTAATGAATAAGATGAACATTCCAGCTCCATTCCGATTGCCTCTACCCACTCCACCTCTCCCACCTTCCGTTCCTGCAC
CACCGTCATCACTAACATTGCCACCACTTCCTCCTCCTGCCACTCCAAGGCCTCAAATAACAAATGTGTCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGATGTG
GAAGGAAAATATAATTCAAGTGGAGTCTCAAAAACTGCAAGATCAGGAAACAAGCGGTCTAGGTGTGAAGCAATTGTAGGCCCCGGGATAGACAAAGATGTGGCTCATGA
GACTGTTGGGGTGAAACCTTCCACATTGGTCCCCAAAGAGATTCCGATGATAAAAAAGAAAAACCCAGTGTTTCAGTTTAAAATTGCCCCTAAGGTGGTTCATGACGGAA
AGCAGGAAGGAAAGGGGGATGATATTAATAATGAGGTCGAAGAGACAGAAAAGGAAGCAGCAGATCTTAAATCCTATGCAACACTCGAAGATTTAGAGAGAGGTAAATTG
CCTCCAGAAGAAATTCTATCACTTCCAATGTTCAAGAACTATACTGCTGGGAGTCCTACTTCGGTGCTGTATATTAAGAACTTAGCCAAAGATGTAGTGAATGATGACCT
CTACTATATATTTGGATCATTATTTGGAGGTATTGATGAAGCCAAATCTGCTCTCACTGTGAAGCTAATGCAGGAGGGAAGAATGAGGGGCCAAGCATTTGTTACACTTC
CATCAGTTGAACTTGCGCAACATGCTTTGAATCTAGTAAATGGTTACGTATTCAAAGGCAAGCCAATGATTATCCAGTTTGGACGCAATCCAGGAGCTGCCAAGGGAGTT
AAAGTCGGCTCCTAGTACCCCCTGAAACCCTAAAATATAAGCTTATGCCGGCTCACGGGAAATTTACAGTTACTCCCATTGAGAATTAGGTCTTGTATGAAGTGATATAT
TTTTAATTTTTAAAGTAGTATAGATGTGATAAACAATGTAAAGCAGCACAGAAAGTTTCATACTACTGTTGTACTAAAAATTTCCCAACTTGCATGCTAACCAGCATGTA
AACAGCTTAGTGGGCGCTTAATGTTATTAATAGCTTGCACGGCTGCTCGTTAGGAGGAGGCCATTTGAATCAAATGAGGCTGTATCACCTGGCTTCCAAAAACGGAGGGA
GTTGGCGTTGCGTGTGCTAAATGGTCAATTTTTTTTGGTCGTTTGGTGCAATTGTTGAGTTGGTTTGTGCAGAGATTTGTTATGTTAAACTGAGTCAAGGATTTGAGTTG
TATGTTCAGTTCAGTTCTAGGAATATTTGTTAGGTGATTGGAGTTGAAAAAAATTATAATACTTGCAACACAAGTGAAAAATTATATTCGTGAATTTTTT
Protein sequenceShow/hide protein sequence
MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVP
KEIPMIKKKNPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGI
DEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKGVKVGS