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Carg23333 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23333
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA-directed RNA polymerase subunit
Genome locationCarg_Chr06:10438771..10442170
RNA-Seq ExpressionCarg23333
SyntenyCarg23333
Gene Ontology termsGO:0006386 - termination of RNA polymerase III transcription (biological process)
GO:0042779 - tRNA 3'-trailer cleavage (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001222 - Zinc finger, TFIIS-type
IPR001529 - DNA-directed RNA polymerase, M/15kDa subunit
IPR012164 - DNA-directed RNA polymerase subunit/transcription factor S
IPR019761 - DNA-directed RNA polymerase M, 15kDa subunit, conserved site
IPR029401 - Nudix hydrolase, N-terminal
IPR034014 - Pol III subunit C11, C-terminal zinc ribbon


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597716.1 DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. sororia]6.2e-68100Show/hide
Query:  VRKRLSFGRTWRMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRS
        VRKRLSFGRTWRMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRS
Subjt:  VRKRLSFGRTWRMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRS

Query:  ADEPASTFYKCMNEDCRQNWRED
        ADEPASTFYKCMNEDCRQNWRED
Subjt:  ADEPASTFYKCMNEDCRQNWRED

KAG7029162.1 DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. argyrosperma]7.1e-88100Show/hide
Query:  MTPNFLQYYLLFLYCPPPDSLLGFNSLARHSVRKRLSFGRTWRMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIIS
        MTPNFLQYYLLFLYCPPPDSLLGFNSLARHSVRKRLSFGRTWRMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIIS
Subjt:  MTPNFLQYYLLFLYCPPPDSLLGFNSLARHSVRKRLSFGRTWRMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIIS

Query:  DDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED
        DDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED
Subjt:  DDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED

XP_004141147.1 DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus]1.2e-5897.3Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCM

Query:  NEDCRQNWRED
        NE+CRQNWRED
Subjt:  NEDCRQNWRED

XP_022932603.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata]2.8e-60100Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCM

Query:  NEDCRQNWRED
        NEDCRQNWRED
Subjt:  NEDCRQNWRED

XP_038903069.1 DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida]4.5e-5896.4Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCM

Query:  NEDCRQNWRED
        NE+CR NWRED
Subjt:  NEDCRQNWRED

TrEMBL top hitse value%identityAlignment
A0A0A0LCM4 DNA-directed RNA polymerase subunit5.7e-5997.3Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCM

Query:  NEDCRQNWRED
        NE+CRQNWRED
Subjt:  NEDCRQNWRED

A0A1S3CQ50 DNA-directed RNA polymerase subunit5.7e-5997.3Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCM

Query:  NEDCRQNWRED
        NE+CRQNWRED
Subjt:  NEDCRQNWRED

A0A6J1DGL3 DNA-directed RNA polymerase subunit9.1e-5792.79Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISD+DMKNAAQTEATCPNC FGKAAFIQ+QLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCM

Query:  NEDCRQNWRED
        NEDCR NWRED
Subjt:  NEDCRQNWRED

A0A6J1EXG3 DNA-directed RNA polymerase subunit1.4e-60100Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCM

Query:  NEDCRQNWRED
        NEDCRQNWRED
Subjt:  NEDCRQNWRED

A0A6J1IB59 DNA-directed RNA polymerase subunit1.4e-60100Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCM

Query:  NEDCRQNWRED
        NEDCRQNWRED
Subjt:  NEDCRQNWRED

SwissProt top hitse value%identityAlignment
O13896 DNA-directed RNA polymerase III subunit RPC107.5e-1638.6Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD-MKNAAQTEATCPN--CGFGKAAFIQIQLRSADEPASTFY
        M+FCPTCGN L   +   G+++ F C TCPY  +      +  +    +KE++ ++  ++  ++  QTE TC N  C   +A F Q+Q+RSADEP STFY
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD-MKNAAQTEATCPN--CGFGKAAFIQIQLRSADEPASTFY

Query:  KCMNEDCRQNWRED
        +C    C+  WRE+
Subjt:  KCMNEDCRQNWRED

Q04307 DNA-directed RNA polymerase III subunit RPC103.7e-1538.6Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPN---CGFGKAAFIQIQLRSADEPASTFY
        + FCP+C NML     + G  +   C +CPY   +E  ++I  ++ L +KE++ ++      N  QT+  CPN   CG   A F Q+Q+RSADEP +TFY
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPN---CGFGKAAFIQIQLRSADEPASTFY

Query:  KCMNEDCRQNWRED
        KC+N  C   W+E+
Subjt:  KCMNEDCRQNWRED

Q2M2S7 DNA-directed RNA polymerase III subunit RPC108.3e-1539.81Show/hide
Query:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNE
        FCP CGN L  E     +  RF C TCPYV  +  +V   RK   +K+  + +      +N   T   CP C   +A F+Q+Q R ADEP +TFYKC N 
Subjt:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNE

Query:  DCRQNWRE
         C   WR+
Subjt:  DCRQNWRE

Q9CQZ7 DNA-directed RNA polymerase III subunit RPC109.8e-1640.37Show/hide
Query:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISD-DDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMN
        FCP CGN L  E     +  RF C TCPYV  +  +V  ++   L  KE++ ++      +N   T   CP C   +A F+Q+Q RSADEP +TFYKC N
Subjt:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISD-DDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMN

Query:  EDCRQNWRE
          C   WR+
Subjt:  EDCRQNWRE

Q9Y2Y1 DNA-directed RNA polymerase III subunit RPC105.7e-1640.37Show/hide
Query:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISD-DDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMN
        FCP CGN L  E     +  RF C TCPYV  +  +V  ++   L  KE++ ++      +N   T  +CP C   +A F+Q+Q RSADEP +TFYKC N
Subjt:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISD-DDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMN

Query:  EDCRQNWRE
          C   WR+
Subjt:  EDCRQNWRE

Arabidopsis top hitse value%identityAlignment
AT1G01210.1 DNA-directed RNA polymerase, subunit M, archaeal3.1e-3355.86Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCM
        MEFCPTCGN+L++E    G +SRFFC TCPYV+Y++ +V+IK+KQ LVKK +E +++ DD+  AA+TEA CP CG  KA F  +Q+RSADEP S FY+C+
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCM

Query:  NEDCRQNWRED
           C   WRE+
Subjt:  NEDCRQNWRED

AT2G38560.1 transcript elongation factor IIS3.0e-0439.13Show/hide
Query:  AAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWR
        A+  +  C  CG  K  + Q+Q RSADEP +T+  C+N  C  +W+
Subjt:  AAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWR

AT4G07950.1 DNA-directed RNA polymerase, subunit M, archaeal2.8e-3458.56Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCM
        MEFCPTCGN+L++E    G SSRFFC TCPYV+ +E RV+IK+KQ LVKK +EP+++ DD+  AA+TEA CP CG  KA F  +Q+RSADEP S FY+C+
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCM

Query:  NEDCRQNWRED
           C   WRE+
Subjt:  NEDCRQNWRED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGCCTAACTTTTTGCAATATTATTTATTATTTTTATATTGCCCACCTCCCGATTCACTCCTCGGATTCAATTCACTCGCACGCCACAGCGTACGAAAGCGTCTCTC
GTTCGGTAGGACTTGGCGAATGGAGTTTTGCCCAACTTGTGGGAACATGCTGCAATTTGAGTTACCCAATATGGGTAAATCTTCTAGATTCTTTTGCCCGACTTGTCCGT
ACGTGTCTTACTTGGAGAATAGGGTAAAGATAAAAAGAAAGCAGCATTTGGTGAAAAAGGAATTAGAACCCATAATCTCTGATGACGATATGAAAAATGCAGCTCAAACC
GAAGCAACATGTCCAAATTGTGGGTTTGGCAAGGCTGCATTCATACAAATACAACTGAGATCAGCTGATGAACCTGCTTCAACATTTTACAAGTGCATGAACGAAGACTG
CAGACAGAATTGGCGTGAGGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGACGCCTAACTTTTTGCAATATTATTTATTATTTTTATATTGCCCACCTCCCGATTCACTCCTCGGATTCAATTCACTCGCACGCCACAGCGTACGAAAGCGTCTCTC
GTTCGGTAGGACTTGGCGAATGGAGTTTTGCCCAACTTGTGGGAACATGCTGCAATTTGAGTTACCCAATATGGGTAAATCTTCTAGATTCTTTTGCCCGACTTGTCCGT
ACGTGTCTTACTTGGAGAATAGGGTAAAGATAAAAAGAAAGCAGCATTTGGTGAAAAAGGAATTAGAACCCATAATCTCTGATGACGATATGAAAAATGCAGCTCAAACC
GAAGCAACATGTCCAAATTGTGGGTTTGGCAAGGCTGCATTCATACAAATACAACTGAGATCAGCTGATGAACCTGCTTCAACATTTTACAAGTGCATGAACGAAGACTG
CAGACAGAATTGGCGTGAGGATTAAGTGCCCATGAACAAAAGTATACGTTTGTGAGATCATAAGTTTTTCATTACTGATTTTCTAACCAAATTAGAAGTAATTTCAATTA
ATAAAATATTATTTACATGAACGGCCTTGTCGAATAGGATCTATTCTATATGTTCTACCTTTATGTCCTTGAGTTCTAAATAATTTCTTACATGAATTACCTTTAGAATG
TCGTAGGCTTGATGAATGATAGAAATTTTCTCCGTTGTTAATTTTTTTATTTTTTACTTTTTAATTTAGAAAACACAAAGGTGTTTGATGATCCATTTAATTTTTAGTT
Protein sequenceShow/hide protein sequence
MTPNFLQYYLLFLYCPPPDSLLGFNSLARHSVRKRLSFGRTWRMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQT
EATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED