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Carg23345 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23345
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSerine-rich family protein
Genome locationCarg_Chr01:9038755..9039078
RNA-Seq ExpressionCarg23345
SyntenyCarg23345
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048240.1 putative PGPS/D10 protein [Cucumis melo var. makuwa]4.5e-1761.45Show/hide
Query:  IGFTDFDLEDLK-RSPRVLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSSEFMG
        +  T+ +L DLK  +  +LVSPS  S+  K   +AK +CLCSPTTHIGSFRCRHHR  AG++RGGSVGSNLSDL RK +E MG
Subjt:  IGFTDFDLEDLK-RSPRVLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSSEFMG

KAF4391351.1 hypothetical protein G4B88_016661 [Cannabis sativa]2.1e-1448.54Show/hide
Query:  MDHKPDHR-APRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVL-VSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDR
        MD K + R +  P ++    +  K+   + +LED K+   +L VSP   +     S + + +CLCSPTTH+GSFRCRHH RS G+LRGGSVGSNL+DL R
Subjt:  MDHKPDHR-APRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVL-VSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDR

Query:  KSS
        KSS
Subjt:  KSS

KAG6607735.1 hypothetical protein SDJN03_01077, partial [Cucurbita argyrosperma subsp. sororia]1.2e-54100Show/hide
Query:  MDHKPDHRAPRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKS
        MDHKPDHRAPRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKS
Subjt:  MDHKPDHRAPRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKS

Query:  SEFMGFS
        SEFMGFS
Subjt:  SEFMGFS

KAG7024984.1 hypothetical protein SDJN02_13804, partial [Cucurbita argyrosperma subsp. argyrosperma]4.8e-2762.5Show/hide
Query:  MDHKPDHRAPRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKS
        MDHKPDHRAPRP  R++ +HH+K  FTDFDLED K+   +L S    S   K   +AK SCLCSPTTHIGSFRCRHHR + G+LRG SVGSNLS+L  KS
Subjt:  MDHKPDHRAPRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKS

Query:  SEFM
        ++ M
Subjt:  SEFM

KGN44385.1 hypothetical protein Csa_015645 [Cucumis sativus]2.6e-2862.28Show/hide
Query:  MDHKPDHRAPRP--------THRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSP-AAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGS
        MD+K DHRAPRP         H H+  HH+K+ FTD +LEDLK++PR+LVSPS  SS    +P +AK +CLCSPTTHIGSFRCRHHR S G++RGGSVGS
Subjt:  MDHKPDHRAPRP--------THRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSP-AAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGS

Query:  NLSDLDRKSSEFMG
        NLSDL RK +E +G
Subjt:  NLSDLDRKSSEFMG

TrEMBL top hitse value%identityAlignment
A0A0A0K3W3 Uncharacterized protein1.2e-2862.28Show/hide
Query:  MDHKPDHRAPRP--------THRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSP-AAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGS
        MD+K DHRAPRP         H H+  HH+K+ FTD +LEDLK++PR+LVSPS  SS    +P +AK +CLCSPTTHIGSFRCRHHR S G++RGGSVGS
Subjt:  MDHKPDHRAPRP--------THRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSP-AAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGS

Query:  NLSDLDRKSSEFMG
        NLSDL RK +E +G
Subjt:  NLSDLDRKSSEFMG

A0A5A7TYF3 Putative PGPS/D10 protein2.2e-1761.45Show/hide
Query:  IGFTDFDLEDLK-RSPRVLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSSEFMG
        +  T+ +L DLK  +  +LVSPS  S+  K   +AK +CLCSPTTHIGSFRCRHHR  AG++RGGSVGSNLSDL RK +E MG
Subjt:  IGFTDFDLEDLK-RSPRVLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSSEFMG

A0A5N6L3X1 Uncharacterized protein5.1e-1457.69Show/hide
Query:  KIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKS
        KI   + +L+D+K+ P +LVSPSL  +  K S   K +CLCSPTTH+GSFRCRHHR S+ + RGGSVGS LS+L  KS
Subjt:  KIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKS

A0A7J6EXD7 Uncharacterized protein1.7e-1450.55Show/hide
Query:  PTHRHSLDHHNKIGFTDFDLEDLKRSPRVL-VSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSS
        P ++    +  K+   + +LED K+   +L VSP   +     S + + +CLCSPTTH+GSFRCRHH RS G+LRGGSVGSNL+DL RKSS
Subjt:  PTHRHSLDHHNKIGFTDFDLEDLKRSPRVL-VSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSS

A0A7J6H8T3 Uncharacterized protein1.0e-1448.54Show/hide
Query:  MDHKPDHR-APRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVL-VSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDR
        MD K + R +  P ++    +  K+   + +LED K+   +L VSP   +     S + + +CLCSPTTH+GSFRCRHH RS G+LRGGSVGSNL+DL R
Subjt:  MDHKPDHR-APRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVL-VSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDR

Query:  KSS
        KSS
Subjt:  KSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G67910.1 unknown protein4.7e-0480.95Show/hide
Query:  KGSCLCSPTTHIGSFRCRHHR
        K +CLCSPTTH GSFRCR HR
Subjt:  KGSCLCSPTTHIGSFRCRHHR

AT1G67910.2 unknown protein4.7e-0480.95Show/hide
Query:  KGSCLCSPTTHIGSFRCRHHR
        K +CLCSPTTH GSFRCR HR
Subjt:  KGSCLCSPTTHIGSFRCRHHR

AT3G13227.1 serine-rich protein-related2.2e-0944.3Show/hide
Query:  DFDLEDLKRSPRVLVSPSLH--------SSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGI--LRGGSVGSNLSDL
        D   +D+KR     +SP +         S     S + + +CLC+PTTH GSFRCR+HRR+AG+   RG SV SNLS L
Subjt:  DFDLEDLKRSPRVLVSPSLH--------SSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGI--LRGGSVGSNLSDL

AT5G20370.1 serine-rich protein-related3.6e-0450Show/hide
Query:  PRVLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRR
        P V+   S H + +K        CLCSPTTH GSFRC  HRR
Subjt:  PRVLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRR

AT5G55980.1 serine-rich protein-related6.3e-0951.61Show/hide
Query:  SPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSD-LDRKSSEF
        SPSL         + + +CLCSPTTH GSFRCR+HR  + + R GS+GSNL+  L  KSS F
Subjt:  SPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSD-LDRKSSEF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCACAAACCAGATCACAGGGCCCCAAGGCCCACTCACAGACACAGCCTCGATCATCACAACAAAATCGGATTCACAGATTTCGATTTAGAGGATCTGAAGCGGAG
CCCTCGCGTACTTGTGTCTCCGTCCTTGCATTCTTCGCCGCAGAAGGTCTCCCCTGCGGCCAAGGGGAGTTGTCTCTGCTCTCCCACGACGCATATTGGCTCCTTCCGAT
GTCGGCACCACCGGCGCTCTGCTGGTATCCTCCGCGGCGGATCTGTCGGCTCCAATCTCTCCGATTTGGATCGTAAATCGAGTGAATTTATGGGATTCTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCACAAACCAGATCACAGGGCCCCAAGGCCCACTCACAGACACAGCCTCGATCATCACAACAAAATCGGATTCACAGATTTCGATTTAGAGGATCTGAAGCGGAG
CCCTCGCGTACTTGTGTCTCCGTCCTTGCATTCTTCGCCGCAGAAGGTCTCCCCTGCGGCCAAGGGGAGTTGTCTCTGCTCTCCCACGACGCATATTGGCTCCTTCCGAT
GTCGGCACCACCGGCGCTCTGCTGGTATCCTCCGCGGCGGATCTGTCGGCTCCAATCTCTCCGATTTGGATCGTAAATCGAGTGAATTTATGGGATTCTCCTAG
Protein sequenceShow/hide protein sequence
MDHKPDHRAPRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSSEFMGFS