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Carg23432 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23432
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRubredoxin
Genome locationCarg_Chr05:10703699..10704295
RNA-Seq ExpressionCarg23432
SyntenyCarg23432
Gene Ontology termsGO:0010207 - photosystem II assembly (biological process)
GO:0022900 - electron transport chain (biological process)
GO:0043448 - alkane catabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0005506 - iron ion binding (molecular function)
GO:0009055 - electron transfer activity (molecular function)
InterPro domainsIPR018527 - Rubredoxin, iron-binding site
IPR024934 - Rubredoxin-like domain
IPR024935 - Rubredoxin domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33910.1 rubredoxin [Cucumis melo subsp. melo]1.0e-8684.92Show/hide
Query:  AAYASARPTLSFHLSQPSVPSPRFNFKPPLVA-FPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAA---VVGEEAAAAEEKLDRRRMEEKFAVLN
        A Y+SARPTLSFHLSQPS+P PRFNFKPP+ A  PPLQR +AARPI IFTLNSIDVSKEDKPTSDDP+  +   VV  E    EEK D+RR+EE+FAVLN
Subjt:  AAYASARPTLSFHLSQPSVPSPRFNFKPPLVA-FPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAA---VVGEEAAAAEEKLDRRRMEEKFAVLN

Query:  TGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ
        TGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYG+L FFFALFLSGYFLQ
Subjt:  TGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ

XP_022946609.1 uncharacterized protein LOC111450624 [Cucurbita moschata]1.5e-106100Show/hide
Query:  MAAAAYASARPTLSFHLSQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAAVVGEEAAAAEEKLDRRRMEEKFAVLNT
        MAAAAYASARPTLSFHLSQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAAVVGEEAAAAEEKLDRRRMEEKFAVLNT
Subjt:  MAAAAYASARPTLSFHLSQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAAVVGEEAAAAEEKLDRRRMEEKFAVLNT

Query:  GIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ
        GIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ
Subjt:  GIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ

XP_022999262.1 uncharacterized protein LOC111493686 [Cucurbita maxima]1.6e-10096.43Show/hide
Query:  AAAYASARPTLSFHLSQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAAVVGEEAAAAEEKLDRRRMEEKFAVLNTGI
        A +YASARPTLSFHL QPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPD AAVVGEE  AAEEKLDRRR+EEKFAVLNTGI
Subjt:  AAAYASARPTLSFHLSQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAAVVGEEAAAAEEKLDRRRMEEKFAVLNTGI

Query:  YECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ
        YECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ
Subjt:  YECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ

XP_023545844.1 uncharacterized protein LOC111805157 [Cucurbita pepo subsp. pepo]5.3e-10498.49Show/hide
Query:  MAAAAYASARPTLSFHLSQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAAVVGEEAA-AAEEKLDRRRMEEKFAVLN
        MAAAAYASARPTLSFHLSQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSKEDKPTS+DPD AAVVGEEAA AAEEKLDRRRMEEKFAVLN
Subjt:  MAAAAYASARPTLSFHLSQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAAVVGEEAA-AAEEKLDRRRMEEKFAVLN

Query:  TGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ
        TGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ
Subjt:  TGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ

XP_038891199.1 rubredoxin [Benincasa hispida]3.1e-8883.82Show/hide
Query:  AAYASARPTLSFHLSQPSVPSPRFNFKPP---------LVAFPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAAVVGEEAAAAEEKLDRRRMEEK
        AAY+SARPTLSFHLSQPS+P PRFNFKPP         + A PPLQRSAAARP  IFTLNSIDVSKEDKPTSDDP+  +     A   EEK D+RR+EEK
Subjt:  AAYASARPTLSFHLSQPSVPSPRFNFKPP---------LVAFPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAAVVGEEAAAAEEKLDRRRMEEK

Query:  FAVLNTGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSG
        FAVLNTGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYG+LFFFFALFLSG
Subjt:  FAVLNTGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSG

Query:  YFLQ
        YFLQ
Subjt:  YFLQ

TrEMBL top hitse value%identityAlignment
A0A1S4E0U3 uncharacterized protein LOC1034995484.9e-8784.92Show/hide
Query:  AAYASARPTLSFHLSQPSVPSPRFNFKPPLVA-FPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAA---VVGEEAAAAEEKLDRRRMEEKFAVLN
        A Y+SARPTLSFHLSQPS+P PRFNFKPP+ A  PPLQR +AARPI IFTLNSIDVSKEDKPTSDDP+  +   VV  E    EEK D+RR+EE+FAVLN
Subjt:  AAYASARPTLSFHLSQPSVPSPRFNFKPPLVA-FPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAA---VVGEEAAAAEEKLDRRRMEEKFAVLN

Query:  TGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ
        TGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYG+L FFFALFLSGYFLQ
Subjt:  TGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ

A0A5A7VDM5 Rubredoxin4.9e-8784.92Show/hide
Query:  AAYASARPTLSFHLSQPSVPSPRFNFKPPLVA-FPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAA---VVGEEAAAAEEKLDRRRMEEKFAVLN
        A Y+SARPTLSFHLSQPS+P PRFNFKPP+ A  PPLQR +AARPI IFTLNSIDVSKEDKPTSDDP+  +   VV  E    EEK D+RR+EE+FAVLN
Subjt:  AAYASARPTLSFHLSQPSVPSPRFNFKPPLVA-FPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAA---VVGEEAAAAEEKLDRRRMEEKFAVLN

Query:  TGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ
        TGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYG+L FFFALFLSGYFLQ
Subjt:  TGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ

A0A6J1G4B1 uncharacterized protein LOC1114506247.2e-107100Show/hide
Query:  MAAAAYASARPTLSFHLSQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAAVVGEEAAAAEEKLDRRRMEEKFAVLNT
        MAAAAYASARPTLSFHLSQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAAVVGEEAAAAEEKLDRRRMEEKFAVLNT
Subjt:  MAAAAYASARPTLSFHLSQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAAVVGEEAAAAEEKLDRRRMEEKFAVLNT

Query:  GIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ
        GIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ
Subjt:  GIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ

A0A6J1KAE6 uncharacterized protein LOC1114936867.7e-10196.43Show/hide
Query:  AAAYASARPTLSFHLSQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAAVVGEEAAAAEEKLDRRRMEEKFAVLNTGI
        A +YASARPTLSFHL QPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPD AAVVGEE  AAEEKLDRRR+EEKFAVLNTGI
Subjt:  AAAYASARPTLSFHLSQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAAVVGEEAAAAEEKLDRRRMEEKFAVLNTGI

Query:  YECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ
        YECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ
Subjt:  YECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ

E5GBR8 Rubredoxin4.9e-8784.92Show/hide
Query:  AAYASARPTLSFHLSQPSVPSPRFNFKPPLVA-FPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAA---VVGEEAAAAEEKLDRRRMEEKFAVLN
        A Y+SARPTLSFHLSQPS+P PRFNFKPP+ A  PPLQR +AARPI IFTLNSIDVSKEDKPTSDDP+  +   VV  E    EEK D+RR+EE+FAVLN
Subjt:  AAYASARPTLSFHLSQPSVPSPRFNFKPPLVA-FPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAA---VVGEEAAAAEEKLDRRRMEEKFAVLN

Query:  TGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ
        TGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYG+L FFFALFLSGYFLQ
Subjt:  TGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ

SwissProt top hitse value%identityAlignment
P00270 Rubredoxin9.3e-1154Show/hide
Query:  IYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESK
        IY C  CG+++D A GDP   I PG  FE LP+DW CP CGA+K  FE +
Subjt:  IYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESK

P73068 Rubredoxin2.5e-1941.96Show/hide
Query:  LDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIA--GFAQNQQYGLGGNTLTSGQKAVLIYGT
        +  R  E+  A L +  +ECR+CG+ +  + GD    ++PG PFE LP +W+CP CGA +++F S     A  GFA+N  YG G N ++ G+K +LI+G+
Subjt:  LDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIA--GFAQNQQYGLGGNTLTSGQKAVLIYGT

Query:  LFFFFALFLSGY
        LF  F  FLS Y
Subjt:  LFFFFALFLSGY

Q9FDN6 High molecular weight rubredoxin2.1e-1055.32Show/hide
Query:  YECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFE
        Y+C  C + +D   GDP + IAPG PF  LPEDW CP CGA K  FE
Subjt:  YECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFE

Q9WWN1 Rubredoxin3.9e-1745.79Show/hide
Query:  AVLNTGI--YECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFES--KSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALF
        AV NT +  +ECRSCG+ ++   GD  + IAP  PF +LP +WRCP C A K+ F +   +   +GF +N  YGLG N LT  QK +LI+G L   F  F
Subjt:  AVLNTGI--YECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFES--KSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALF

Query:  LSGYFLQ
        +S Y LQ
Subjt:  LSGYFLQ

Q9XBL8 Rubredoxin2.3e-1745.79Show/hide
Query:  AVLNTGI--YECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFES--KSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALF
        AV NT +  +ECRSCG+ ++   GD  + IAP  PF +LP +WRCP C A K+ F +   +   +GF +N  YGLG N LT  QK +LI+G L   F  F
Subjt:  AVLNTGI--YECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFES--KSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALF

Query:  LSGYFLQ
        +S Y LQ
Subjt:  LSGYFLQ

Arabidopsis top hitse value%identityAlignment
AT1G54500.1 Rubredoxin-like superfamily protein6.6e-5276.03Show/hide
Query:  EAAAAEEKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKA
        E    E+ +++RRMEEKFAVLNTGIYECRSCG+K+DE+ GDP+YPI PG  F++LPEDWRCPTCGAA+SFFESK VEIAGFAQNQQYGLGGN LTSGQK 
Subjt:  EAAAAEEKLDRRRMEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKA

Query:  VLIYGTLFFFFALFLSGYFLQ
         LI+G+L  FFALFLSGYF+Q
Subjt:  VLIYGTLFFFFALFLSGYFLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCTGCTGCTTATGCCTCTGCAAGACCCACTCTCTCCTTCCATCTCTCTCAACCCTCCGTTCCCAGTCCCAGATTCAATTTCAAACCCCCCCTCGTTGCCTTTCC
GCCGTTGCAGAGATCGGCGGCGGCGAGACCCATCCCCATTTTCACCCTCAACTCCATCGACGTCTCCAAAGAGGACAAACCCACTTCGGACGACCCGGATTTCGCCGCGG
TAGTTGGGGAAGAGGCGGCGGCGGCGGAGGAGAAGTTGGACAGGCGGCGAATGGAGGAGAAATTTGCAGTGCTGAACACGGGGATATATGAGTGCAGGTCGTGTGGGCAT
AAGTTCGACGAGGCGGTTGGGGATCCGACGTATCCGATAGCGCCGGGGCTGCCGTTCGAGCAGCTGCCGGAGGACTGGCGGTGCCCGACGTGTGGGGCGGCGAAGAGCTT
CTTCGAGAGTAAGAGTGTGGAGATAGCGGGGTTTGCTCAGAATCAGCAGTACGGACTTGGAGGGAACACTCTGACTTCAGGTCAGAAGGCAGTGCTCATCTATGGAACCT
TGTTCTTCTTCTTTGCTTTGTTCCTCTCTGGCTATTTCTTGCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCTGCTGCTTATGCCTCTGCAAGACCCACTCTCTCCTTCCATCTCTCTCAACCCTCCGTTCCCAGTCCCAGATTCAATTTCAAACCCCCCCTCGTTGCCTTTCC
GCCGTTGCAGAGATCGGCGGCGGCGAGACCCATCCCCATTTTCACCCTCAACTCCATCGACGTCTCCAAAGAGGACAAACCCACTTCGGACGACCCGGATTTCGCCGCGG
TAGTTGGGGAAGAGGCGGCGGCGGCGGAGGAGAAGTTGGACAGGCGGCGAATGGAGGAGAAATTTGCAGTGCTGAACACGGGGATATATGAGTGCAGGTCGTGTGGGCAT
AAGTTCGACGAGGCGGTTGGGGATCCGACGTATCCGATAGCGCCGGGGCTGCCGTTCGAGCAGCTGCCGGAGGACTGGCGGTGCCCGACGTGTGGGGCGGCGAAGAGCTT
CTTCGAGAGTAAGAGTGTGGAGATAGCGGGGTTTGCTCAGAATCAGCAGTACGGACTTGGAGGGAACACTCTGACTTCAGGTCAGAAGGCAGTGCTCATCTATGGAACCT
TGTTCTTCTTCTTTGCTTTGTTCCTCTCTGGCTATTTCTTGCAATGA
Protein sequenceShow/hide protein sequence
MAAAAYASARPTLSFHLSQPSVPSPRFNFKPPLVAFPPLQRSAAARPIPIFTLNSIDVSKEDKPTSDDPDFAAVVGEEAAAAEEKLDRRRMEEKFAVLNTGIYECRSCGH
KFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLFFFFALFLSGYFLQ