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Carg23460 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23460
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionINO80 complex subunit C
Genome locationCarg_Chr12:9401016..9402732
RNA-Seq ExpressionCarg23460
SyntenyCarg23460
Gene Ontology termsGO:0006338 - chromatin remodeling (biological process)
GO:0006468 - protein phosphorylation (biological process)
GO:0031011 - Ino80 complex (cellular component)
GO:0004672 - protein kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR029525 - INO80 complex, subunit Ies6


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7021001.1 hypothetical protein SDJN02_17689, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-151100Show/hide
Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNCKISLSVSIILFDYIFCLRRRCIVKTLRGSERESPKRTISAS
        MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNCKISLSVSIILFDYIFCLRRRCIVKTLRGSERESPKRTISAS
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNCKISLSVSIILFDYIFCLRRRCIVKTLRGSERESPKRTISAS

Query:  GGLEPSDDVPVRKLSPEGADTRRCASKDVGPKGDRLGVLHRLERGTSVSEDAGPQRRWITRFKNLEGKPERESPKRTISASGGLESSGDVPTRRLSPEGV
        GGLEPSDDVPVRKLSPEGADTRRCASKDVGPKGDRLGVLHRLERGTSVSEDAGPQRRWITRFKNLEGKPERESPKRTISASGGLESSGDVPTRRLSPEGV
Subjt:  GGLEPSDDVPVRKLSPEGADTRRCASKDVGPKGDRLGVLHRLERGTSVSEDAGPQRRWITRFKNLEGKPERESPKRTISASGGLESSGDVPTRRLSPEGV

Query:  DTRRCASKDAGSQRGWIGGSTSIGEGNDEEAEPQRGWIQGGVLTRKLSPEGGGLGGPTSIGEGNECQRGR
        DTRRCASKDAGSQRGWIGGSTSIGEGNDEEAEPQRGWIQGGVLTRKLSPEGGGLGGPTSIGEGNECQRGR
Subjt:  DTRRCASKDAGSQRGWIGGSTSIGEGNDEEAEPQRGWIQGGVLTRKLSPEGGGLGGPTSIGEGNECQRGR

OIW01816.1 hypothetical protein TanjilG_28879 [Lupinus angustifolius]3.7e-2371.62Show/hide
Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNCKISLSVSIILFDYIF
        MEPE++EAELVLP+H +FKR+ MYEKYPKGQ+RGRHWKHLKQI+QAENY NY  DEPNC+IS+    ILF   F
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNCKISLSVSIILFDYIF

XP_022144563.1 INO80 complex subunit C isoform X1 [Momordica charantia]9.7e-2496.55Show/hide
Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN
        MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN+S DEPN
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN

XP_022937916.1 INO80 complex subunit C isoform X1 [Cucurbita moschata]6.7e-25100Show/hide
Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN
        MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN

XP_038889510.1 INO80 complex subunit C isoform X1 [Benincasa hispida]1.3e-2396.55Show/hide
Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN
        MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYS DEPN
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN

TrEMBL top hitse value%identityAlignment
A0A1J7GMT1 Uncharacterized protein1.8e-2371.62Show/hide
Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNCKISLSVSIILFDYIF
        MEPE++EAELVLP+H +FKR+ MYEKYPKGQ+RGRHWKHLKQI+QAENY NY  DEPNC+IS+    ILF   F
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNCKISLSVSIILFDYIF

A0A1S3B479 INO80 complex subunit C isoform X14.0e-2394.83Show/hide
Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN
        MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYS DEPN
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN

A0A6J1CRZ9 INO80 complex subunit C isoform X14.7e-2496.55Show/hide
Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN
        MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN+S DEPN
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN

A0A6J1FBP9 INO80 complex subunit C isoform X13.2e-25100Show/hide
Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN
        MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN

A0A6J1HLV4 INO80 complex subunit C isoform X13.2e-25100Show/hide
Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN
        MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G38495.1 CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has 279 Blast hits to 279 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 133; Plants - 35; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).1.4e-1257.89Show/hide
Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEP
        ME E++EA++V+ + L+FK+ Q YEKYPK QS  R WKHLKQILQAEN+ +   D P
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGACTCACCTGAATTTCAAGCGAATTCAAATGTACGAGAAGTATCCAAAAGGCCAATCCAGAGGCAGGCACTG
GAAGCATCTGAAGCAGATTCTTCAAGCCGAGAATTATCACAACTACTCATCTGATGAACCCAACTGTAAGATTTCTCTTTCAGTTTCAATCATTTTATTTGATTACATCT
TTTGCTTGAGAAGGAGATGCATTGTGAAAACCTTGAGGGGAAGTGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGAGCCGTCGGACGATGTGCCA
GTGAGGAAGCTAAGCCCCGAAGGAGCGGACACGAGGCGGTGTGCCAGCAAGGACGTTGGGCCCAAAGGGGATAGATTGGGGGTTCTACATCGATTGGAGAGGGGAACTAG
TGTCAGCGAGGACGCTGGACCCCAAAGGAGGTGGATTACTCGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGC
TCGAGTCATCGGGCGATGTGCCAACGAGGAGACTAAGCCCCGAAGGGGTGGACACGAGGCGGTGTGCCAGCAAAGACGCTGGGTCCCAAAGGGGGTGGATTGGGGGTTCT
ACATCGATTGGAGAAGGGAACGACGAGGAGGCTGAGCCTCAAAGGGGGTGGATACAAGGCGGCGTGCTAACGAGGAAGCTAAGTCCCGAAGGGGGTGGATTAGGGGGTCC
CACATCGATTGGAGAAGGGAATGAGTGTCAGCGAGGACGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGACTCACCTGAATTTCAAGCGAATTCAAATGTACGAGAAGTATCCAAAAGGCCAATCCAGAGGCAGGCACTG
GAAGCATCTGAAGCAGATTCTTCAAGCCGAGAATTATCACAACTACTCATCTGATGAACCCAACTGTAAGATTTCTCTTTCAGTTTCAATCATTTTATTTGATTACATCT
TTTGCTTGAGAAGGAGATGCATTGTGAAAACCTTGAGGGGAAGTGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGAGCCGTCGGACGATGTGCCA
GTGAGGAAGCTAAGCCCCGAAGGAGCGGACACGAGGCGGTGTGCCAGCAAGGACGTTGGGCCCAAAGGGGATAGATTGGGGGTTCTACATCGATTGGAGAGGGGAACTAG
TGTCAGCGAGGACGCTGGACCCCAAAGGAGGTGGATTACTCGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGC
TCGAGTCATCGGGCGATGTGCCAACGAGGAGACTAAGCCCCGAAGGGGTGGACACGAGGCGGTGTGCCAGCAAAGACGCTGGGTCCCAAAGGGGGTGGATTGGGGGTTCT
ACATCGATTGGAGAAGGGAACGACGAGGAGGCTGAGCCTCAAAGGGGGTGGATACAAGGCGGCGTGCTAACGAGGAAGCTAAGTCCCGAAGGGGGTGGATTAGGGGGTCC
CACATCGATTGGAGAAGGGAATGAGTGTCAGCGAGGACGCTAG
Protein sequenceShow/hide protein sequence
MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNCKISLSVSIILFDYIFCLRRRCIVKTLRGSERESPKRTISASGGLEPSDDVP
VRKLSPEGADTRRCASKDVGPKGDRLGVLHRLERGTSVSEDAGPQRRWITRFKNLEGKPERESPKRTISASGGLESSGDVPTRRLSPEGVDTRRCASKDAGSQRGWIGGS
TSIGEGNDEEAEPQRGWIQGGVLTRKLSPEGGGLGGPTSIGEGNECQRGR