CuGenDBv2

Gene ID	Carg23461
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	INO80 complex subunit C
Genome location	Carg_Chr12:9404775..9407666
RNA-Seq Expression	Carg23461
Synteny	Carg23461
Gene Ontology terms	GO:0006338 - chromatin remodeling (biological process) GO:0031011 - Ino80 complex (cellular component)
InterPro domains	IPR013272 - Vps72/YL1, C-terminal IPR029525 - INO80 complex, subunit Ies6

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7021002.1 ies6, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.6e-41

100

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Query:  MGYFESIIALVYWMSCYVDVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
        MGYFESIIALVYWMSCYVDVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  MGYFESIIALVYWMSCYVDVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR

XP_022144563.1 INO80 complex subunit C isoform X1 [Momordica charantia]

3.1e-29

96.92

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Query:  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
        VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANAD+FKVIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR

XP_022937916.1 INO80 complex subunit C isoform X1 [Cucurbita moschata]

1.8e-29

100

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Query:  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
        VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR

XP_023537972.1 chromatin-remodeling complex subunit ies6-like [Cucurbita pepo subsp. pepo]

3.7e-30

100

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Query:  DVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
        DVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  DVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR

XP_038889510.1 INO80 complex subunit C isoform X1 [Benincasa hispida]

4.1e-29

98.46

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Query:  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
        VNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJN6 YL1_C domain-containing protein

2.0e-29

98.46

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Query:  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
        VNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR

A0A1S3B479 INO80 complex subunit C isoform X1

2.0e-29

98.46

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Query:  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
        VNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR

A0A6J1CRZ9 INO80 complex subunit C isoform X1

1.5e-29

96.92

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Query:  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
        VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANAD+FKVIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR

A0A6J1FBP9 INO80 complex subunit C isoform X1

8.8e-30

100

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Query:  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
        VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR

A0A6J1HLV4 INO80 complex subunit C isoform X1

8.8e-30

100

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Query:  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
        VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR

SwissProt top hits

e value

%identity

Alignment

P32617 Chromatin-remodeling complex subunit IES6

9.1e-08

38.46

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Query:  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK-VIRSLPNEYVQRYLAMRNAAVVLR
        ++E+PPS+ P KK CD+TG +  Y  P   +RY NA+I++ +++ +     Q YL +R A  VL+
Subjt:  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK-VIRSLPNEYVQRYLAMRNAAVVLR

Q5BJY3 INO80 complex subunit C

5.4e-08

39.68

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Query:  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
        +I++PPS  P KK  D++G  A Y DP++ LR++  + F  IR LP++ V  YL +R A  ++
Subjt:  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL

Q6PI98 INO80 complex subunit C

2.4e-08

41.27

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Query:  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
        +I++PPS  P KK  D++G  A Y DP++ LR++  + F  IR LP++ V  YLA+R A  ++
Subjt:  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL

Q8BHA0 INO80 complex subunit C

1.4e-08

42.86

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Query:  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
        +I++PPS  P KK  DI+G  A Y DP++ LR++  + F  IR LP++ V  YLA+R A  ++
Subjt:  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL

Q9UTE8 Chromatin-remodeling complex subunit ies6

6.8e-11

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Query:  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
        +IE+PPS+ P  K CD+TG  A Y DP+T LRY N +I+ +IR LP+   Q YL +R++ VVL+
Subjt:  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR

Arabidopsis top hits

e value

%identity

Alignment

AT2G36740.1 sequence-specific DNA binding transcription factors;DNA binding;DNA binding

3.7e-04

54.29

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Query:  HPCKKICDITGYEAPYYDPRTTLRYANADIFKVIR
        +P K +C ITG  A Y DP+T L YA  D FK IR
Subjt:  HPCKKICDITGYEAPYYDPRTTLRYANADIFKVIR

AT4G38495.1 CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has 279 Blast hits to 279 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 133; Plants - 35; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

7.9e-23

69.23

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Query:  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
        VNIESPPS  PCK++CDITGYEAPY DPRT LRYANA +F+ +RSL ++ V +YL++RNAAVVL+
Subjt:  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR

Sequences

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CDS sequence

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mRNA sequence

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ATGGGTTATTTTGAGAGTATTATAGCTTTAGTTTACTGGATGTCGTGCTATGTGGATGTTAATATCGAGTCACCTCCGTCGATGCATCCATGCAAGAAAATTTGTGATAT
AACAGGATATGAGGCACCATACTATGATCCCAGGACTACTCTTCGATATGCAAATGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTATGTTCAGAGGTATT
TGGCCATGAGAAATGCAGCTGTTGTTTTAAGGTGAAGAGATACTACTTTTCTATTGCCGATTAGCTCGGCGTCGAACGAGACCTCCATCTCGTGGCAGAAAATGCAGTGT
GAATACTTAAAATGCATCATTTGTGTATTGATTCAATCATTTTGTGTATTAAATGGTCTTGGAATGCATTTTATGTTTGCCTTTGGAACTATTAGCCAAAGTTGATTCAT
TTGGTTAAAACTCTCCAAGCTGAAAACATCCCCTAATGGGATTGCAGTTGAAGAAAATTTAAGGCCTAAAACTCGGTTCTATACCTCGAATCTTGAATGATTTCTATGAC
TTCTATGTACCGTCCGTATCAGTAACTAAATAATGATATGTCACGTTTATTGTACAAATATTGTTTGATCATTCACG

Protein sequence

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MGYFESIIALVYWMSCYVDVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR

Carg23461 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome