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Carg23465 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23465
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionphotosystem I reaction center subunit IV, chloroplastic-like
Genome locationCarg_Chr12:9525210..9526495
RNA-Seq ExpressionCarg23465
SyntenyCarg23465
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009538 - photosystem I reaction center (cellular component)
InterPro domainsIPR003375 - Photosystem I PsaE, reaction centre subunit IV
IPR008990 - Electron transport accessory-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008441802.1 PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis melo]9.6e-5588.19Show/hide
Query:  MAASNLSCIASGVIIPSSTTI-SSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYK
        MAASNLSCIASGV+IPSSTTI SSSSR SS+AFFPKNS SISRS RLV+RAAA + AAPPP AAA A A AE PKPKPAPIGPKRG KVKILR+ESYWYK
Subjt:  MAASNLSCIASGVIIPSSTTI-SSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYK

Query:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
Subjt:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

XP_022144405.1 photosystem I reaction center subunit IV, chloroplastic-like [Momordica charantia]5.6e-5587.41Show/hide
Query:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKD
        MAA+NLSCIASGV+IPSS TISSSSR +SVAFFPKN   ISR  RLV+RAAADEAA PPPAAAATADAP E  KPKPAPIGPKRG KVKILR+ESYWYKD
Subjt:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKD

Query:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

XP_022937722.1 photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita moschata]4.1e-66100Show/hide
Query:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKD
        MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKD
Subjt:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKD

Query:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
Subjt:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

XP_022965997.1 photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita maxima]6.0e-6598.6Show/hide
Query:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKD
        MAASNLSCIASGVIIPSS TISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAE PKPKPAPIGPKRGTKVKILRRESYWYKD
Subjt:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKD

Query:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
Subjt:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

XP_023536804.1 photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita pepo subsp. pepo]4.6e-6598.6Show/hide
Query:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKD
        MAASNLSCIASGVIIPSS TISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILR+ESYWYKD
Subjt:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKD

Query:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
Subjt:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

TrEMBL top hitse value%identityAlignment
A0A0A0LJQ1 Uncharacterized protein1.1e-5184.72Show/hide
Query:  MAASNLSCIASGVIIPSSTTI-SSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYK
        MAASNLSCIASGV+IPSSTTI SSSSR SS+AFFPKNS SISRS RLV+RA+  + AAPPPAA A   A  E PKPKPAPIGPKRG KVKILR+ESYWYK
Subjt:  MAASNLSCIASGVIIPSSTTI-SSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYK

Query:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEI+EVA
Subjt:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

A0A1S3B3T3 photosystem I reaction center subunit IV, chloroplastic-like4.6e-5588.19Show/hide
Query:  MAASNLSCIASGVIIPSSTTI-SSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYK
        MAASNLSCIASGV+IPSSTTI SSSSR SS+AFFPKNS SISRS RLV+RAAA + AAPPP AAA A A AE PKPKPAPIGPKRG KVKILR+ESYWYK
Subjt:  MAASNLSCIASGVIIPSSTTI-SSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYK

Query:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
Subjt:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

A0A6J1CRI6 photosystem I reaction center subunit IV, chloroplastic-like2.7e-5587.41Show/hide
Query:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKD
        MAA+NLSCIASGV+IPSS TISSSSR +SVAFFPKN   ISR  RLV+RAAADEAA PPPAAAATADAP E  KPKPAPIGPKRG KVKILR+ESYWYKD
Subjt:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKD

Query:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

A0A6J1FC09 photosystem I reaction center subunit IV, chloroplastic-like2.0e-66100Show/hide
Query:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKD
        MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKD
Subjt:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKD

Query:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
Subjt:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

A0A6J1HLT8 photosystem I reaction center subunit IV, chloroplastic-like2.9e-6598.6Show/hide
Query:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKD
        MAASNLSCIASGVIIPSS TISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAE PKPKPAPIGPKRGTKVKILRRESYWYKD
Subjt:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKD

Query:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
Subjt:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

SwissProt top hitse value%identityAlignment
P12354 Photosystem I reaction center subunit IV, chloroplastic2.6e-3164.57Show/hide
Query:  SSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYP
        +S   S + R       P  + S  RS RLVVR AA+EAAA P AA+   +AP  A   KP PIGPKRG+KV+I+R+ESYWYK VGSVV VDQDP TRYP
Subjt:  SSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYP

Query:  VVVRFNKVNYASVSTNNYALDEIEEVA
        VVVRFNKVNYA+VSTNNYALDEI+EVA
Subjt:  VVVRFNKVNYASVSTNNYALDEIEEVA

Q41228 Photosystem I reaction center subunit IV A, chloroplastic4.8e-3363.01Show/hide
Query:  MAASNLSCIASGVII--PSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAP--KPKPAPIGPKRGTKVKILRRESY
        MA+ N++  AS  ++  P+  + +++SR + + F  KN  S +   RLVVRAA +   A PPAAAATA+ PAEAP    KP PIGPKRGTKV+ILR+ESY
Subjt:  MAASNLSCIASGVII--PSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAP--KPKPAPIGPKRGTKVKILRRESY

Query:  WYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEV
        WYK  GSVV  DQDPNTRYPVVVRFNKVNYA+VSTNNYALDEIEEV
Subjt:  WYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEV

Q41229 Photosystem I reaction center subunit IV B, chloroplastic3.7e-3360Show/hide
Query:  MAASNLSCIASGVII--PSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPK-PKPAPIGPKRGTKVKILRRESYW
        MA+S+++  ASG ++  P+  T +++ R S + F    + + +   RLVVRAA +   A PPAA ATA+  A   K  KP PIGPKRGTKV++LR+ESYW
Subjt:  MAASNLSCIASGVII--PSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPK-PKPAPIGPKRGTKVKILRRESYW

Query:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEV
        YK VGSVV VDQDPNTRYPVVVRFNKVNYA+VSTNNYALDE+EEV
Subjt:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEV

Q9S714 Photosystem I reaction center subunit IV B, chloroplastic1.1e-2959.85Show/hide
Query:  IPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAAT-------ADAPAEAP--KPKPAPIGPKRGTKVKILRRESYWYKDVGSVV
        +P++    SS   + V+F P  S       RLVVRAA D     PPA A++       A APA+ P  K KP PIGPKRG+KVKILR+ESYWYK+VGSVV
Subjt:  IPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAAT-------ADAPAEAP--KPKPAPIGPKRGTKVKILRRESYWYKDVGSVV

Query:  TVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEV
         VDQDP TRYPVVVRF KVNYA++STNNYALDE+EEV
Subjt:  TVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEV

Q9S831 Photosystem I reaction center subunit IV A, chloroplastic3.1e-3263.5Show/hide
Query:  IIPSSTT--ISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAA-----PPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVT
        ++P++ T    +SS  SSV+F P      +   RLVVRAA D A A       PAAAA  D  A A KPKP PIGPKRG+KVKILRRESYW+K+VGSVV 
Subjt:  IIPSSTT--ISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAA-----PPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVT

Query:  VDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        VDQDP TRYPVVVRF KVNYA++STNNYALDE+EEVA
Subjt:  VDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

Arabidopsis top hitse value%identityAlignment
AT2G20260.1 photosystem I subunit E-27.9e-3159.85Show/hide
Query:  IPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAAT-------ADAPAEAP--KPKPAPIGPKRGTKVKILRRESYWYKDVGSVV
        +P++    SS   + V+F P  S       RLVVRAA D     PPA A++       A APA+ P  K KP PIGPKRG+KVKILR+ESYWYK+VGSVV
Subjt:  IPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAAT-------ADAPAEAP--KPKPAPIGPKRGTKVKILRRESYWYKDVGSVV

Query:  TVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEV
         VDQDP TRYPVVVRF KVNYA++STNNYALDE+EEV
Subjt:  TVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEV

AT4G28750.1 Photosystem I reaction centre subunit IV / PsaE protein2.2e-3363.5Show/hide
Query:  IIPSSTT--ISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAA-----PPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVT
        ++P++ T    +SS  SSV+F P      +   RLVVRAA D A A       PAAAA  D  A A KPKP PIGPKRG+KVKILRRESYW+K+VGSVV 
Subjt:  IIPSSTT--ISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAA-----PPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVT

Query:  VDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        VDQDP TRYPVVVRF KVNYA++STNNYALDE+EEVA
Subjt:  VDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCCTCTAACCTTTCATGCATCGCTTCTGGTGTGATCATACCATCTTCAACCACCATTTCTTCCTCTTCTAGGCCATCTTCTGTGGCTTTCTTCCCCAAGAATTC
CATCTCTATTTCGAGATCATGTCGATTGGTTGTCCGGGCCGCCGCCGATGAGGCCGCTGCCCCTCCCCCTGCTGCCGCTGCCACCGCCGACGCCCCCGCCGAAGCGCCCA
AGCCTAAGCCGGCCCCAATTGGCCCCAAGAGAGGTACCAAGGTGAAGATTTTAAGGAGAGAATCCTATTGGTACAAGGATGTTGGATCTGTTGTCACGGTTGACCAGGAC
CCGAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAA
mRNA sequenceShow/hide mRNA sequence
GGCCATCATTATTTCATTGGTTTATCATATTGAACGTTCAAATCTCATCTTCAAGCCATTAACATTCAACCTTCCCTTCACTTCACCAAACCAAGAGAGCCCATGGCTGC
CTCTAACCTTTCATGCATCGCTTCTGGTGTGATCATACCATCTTCAACCACCATTTCTTCCTCTTCTAGGCCATCTTCTGTGGCTTTCTTCCCCAAGAATTCCATCTCTA
TTTCGAGATCATGTCGATTGGTTGTCCGGGCCGCCGCCGATGAGGCCGCTGCCCCTCCCCCTGCTGCCGCTGCCACCGCCGACGCCCCCGCCGAAGCGCCCAAGCCTAAG
CCGGCCCCAATTGGCCCCAAGAGAGGTACCAAGGTGAAGATTTTAAGGAGAGAATCCTATTGGTACAAGGATGTTGGATCTGTTGTCACGGTTGACCAGGACCCGAACAC
TCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAAGCTTTTTATGTGGTTT
TGTATTTTTTAGTTAAATGTTTGTATAATACTTCCAATTTCAATCTATTTCTCCTCTCTCCATGAGTGTGTGTTAGTAATTCTTCCCATAATCTCTCTTCATTAATATAT
TTGAAAAGGATCGATAACGTGATTCGATGATATTTAGATTCTGAGCTCGATATGGATACTTATTATGCAAAGGTATATGGGGTCGTGGTAGT
Protein sequenceShow/hide protein sequence
MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQD
PNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA