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Carg23483 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23483
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionXyloglucan endotransglucosylase/hydrolase
Genome locationCarg_Chr12:9708114..9708597
RNA-Seq ExpressionCarg23483
SyntenyCarg23483
Gene Ontology termsGO:0006073 - cellular glucan metabolic process (biological process)
GO:0071554 - cell wall organization or biogenesis (biological process)
GO:0071840 - cellular component organization or biogenesis (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR000757 - Glycoside hydrolase family 16
IPR013320 - Concanavalin A-like lectin/glucanase domain superfamily
IPR044791 - Beta-glucanase/XTH


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586192.1 putative xyloglucan endotransglucosylase/hydrolase protein 23, partial [Cucurbita argyrosperma subsp. sororia]1.6e-4696.08Show/hide
Query:  MKHELSSSYSTSSSNTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTT
        MKHELSSSYSTSSSNTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELV+LSLDNYS SGFQSKNEYLYAKLGMEMKLVAGN  GTVTT
Subjt:  MKHELSSSYSTSSSNTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTT

Query:  LF
        LF
Subjt:  LF

KAG7021023.1 putative xyloglucan endotransglucosylase/hydrolase protein 23, partial [Cucurbita argyrosperma subsp. argyrosperma]4.7e-4695.1Show/hide
Query:  MKHELSSSYSTSSSNTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTT
        MKHELSSSYSTSSSNTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELV+LSLDNYS SGFQSKNEYLYAKLGMEMKLVAGN  GTVTT
Subjt:  MKHELSSSYSTSSSNTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTT

Query:  LF
         F
Subjt:  LF

KAG7021024.1 putative xyloglucan endotransglucosylase/hydrolase protein 23, partial [Cucurbita argyrosperma subsp. argyrosperma]3.4e-52100Show/hide
Query:  MKHELSSSYSTSSSNTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTT
        MKHELSSSYSTSSSNTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTT
Subjt:  MKHELSSSYSTSSSNTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTT

Query:  LFSHVLRI
        LFSHVLRI
Subjt:  LFSHVLRI

XP_023537974.1 probable xyloglucan endotransglucosylase/hydrolase protein 23 [Cucurbita pepo subsp. pepo]6.8e-4594.12Show/hide
Query:  MKHELSSSYSTSSSNTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTT
        MKHELSSSYSTSSSNTLARLLFAYILLCSWHASYGNDLSTSIDISWGD RG+MVNNNELVILSLDNYS SGFQSKNEY YAKLGMEMKLVAGN  GTVTT
Subjt:  MKHELSSSYSTSSSNTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTT

Query:  LF
        LF
Subjt:  LF

XP_038890936.1 xyloglucan endotransglucosylase/hydrolase protein 22-like [Benincasa hispida]3.6e-2259.05Show/hide
Query:  MKHELSSSYSTSSS---NTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGT
        MK E SSS +  SS   N +   LF Y+LLCS   S  N+L   IDISWGD RG+M NNNEL++LSLD  S SGFQSKNEYL+ K+ M++KLV+GN  GT
Subjt:  MKHELSSSYSTSSS---NTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGT

Query:  VTTLF
        VTT F
Subjt:  VTTLF

TrEMBL top hitse value%identityAlignment
A0A1S3BTF6 Xyloglucan endotransglucosylase/hydrolase8.7e-2263.86Show/hide
Query:  LLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF
        +   Y+L CS+H S  NDLS SIDISWG+ RG+MVNNNEL+ L+LD  S SGFQSKNE+L+AK+ M +KLV+GN  GTVTT F
Subjt:  LLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF

A0A6J1DKD1 Xyloglucan endotransglucosylase/hydrolase1.3e-2057.3Show/hide
Query:  SNTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF
        SN  A  +F  ++ C  H S+  DLS S+DISWGD RG+M++N EL++LSLD  S SGFQSKNEYL+ KL M++KLV+GN  GTVT  F
Subjt:  SNTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF

A0A6J1EV95 Xyloglucan endotransglucosylase/hydrolase2.5e-2164.29Show/hide
Query:  RLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF
        +LLF   + CS+H S GNDL   IDISWGD RG+M+NNNEL++L LD  S SGFQSKNEYL+AK+ M +KLV GN  GTVTT F
Subjt:  RLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF

A0A6J1K7K6 Xyloglucan endotransglucosylase/hydrolase1.3e-2063.1Show/hide
Query:  RLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF
        +LLF   + CS+H S  NDL   IDISWGD RG+M+NNNEL++L LD  S SGFQSKNEYL+AK+ M +KLV GN  GTVTT F
Subjt:  RLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF

N0DX46 Xyloglucan endotransglucosylase/hydrolase3.1e-1964.1Show/hide
Query:  ILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF
        +L CS+H    NDLS  I+ISWGD RG+MVNNNEL+ L LD  S SGF+SKNEYL+AK+ M +KLV+GN  GTVTT F
Subjt:  ILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF

SwissProt top hitse value%identityAlignment
P24806 Xyloglucan endotransglucosylase/hydrolase protein 242.6e-1545.24Show/hide
Query:  RLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF
        ++ F   LL +  +    D +T ++++WG+ RG+++NN +L+ LSLD  S SGFQSK EYL+ K+ M++KLV GN  GTVTT +
Subjt:  RLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF

Q38857 Xyloglucan endotransglucosylase/hydrolase protein 221.1e-1652.33Show/hide
Query:  LARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF
        L  L  + I+  S  A++  D    ++I+WGD RG++ NN EL+ LSLD  S SGFQSKNEYL+ K+ M+MKLV GN  GTVTTL+
Subjt:  LARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF

Q38907 Probable xyloglucan endotransglucosylase/hydrolase protein 255.8e-1552.17Show/hide
Query:  YGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF
        +     T  DI+WGD RG+++NN EL+ LSLD  S SGFQ+K EYL+ K+ M++KLV GN  GTVT  +
Subjt:  YGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF

Q38910 Probable xyloglucan endotransglucosylase/hydrolase protein 232.8e-1748.89Show/hide
Query:  SSNTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF
        S +T+   L A  ++CS  A++  D    ++I+WGD RG++ NN +L+ LSLD  S SGFQSKNEYL+ K+ M++KLVAGN  GTVT  +
Subjt:  SSNTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF

Q9ZV40 Probable xyloglucan endotransglucosylase/hydrolase protein 211.5e-1547.78Show/hide
Query:  SSNTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF
        SS  L   +  ++ L      +G D +  IDI+WGD RG ++NN  L+ L LD  S SGFQSK EYLY K+ M++KLV GN  GTVTT +
Subjt:  SSNTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF

Arabidopsis top hitse value%identityAlignment
AT2G18800.1 xyloglucan endotransglucosylase/hydrolase 211.1e-1647.78Show/hide
Query:  SSNTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF
        SS  L   +  ++ L      +G D +  IDI+WGD RG ++NN  L+ L LD  S SGFQSK EYLY K+ M++KLV GN  GTVTT +
Subjt:  SSNTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF

AT4G25810.1 xyloglucan endotransglycosylase 62.0e-1848.89Show/hide
Query:  SSNTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF
        S +T+   L A  ++CS  A++  D    ++I+WGD RG++ NN +L+ LSLD  S SGFQSKNEYL+ K+ M++KLVAGN  GTVT  +
Subjt:  SSNTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF

AT4G30270.1 xyloglucan endotransglucosylase/hydrolase 241.9e-1645.24Show/hide
Query:  RLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF
        ++ F   LL +  +    D +T ++++WG+ RG+++NN +L+ LSLD  S SGFQSK EYL+ K+ M++KLV GN  GTVTT +
Subjt:  RLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF

AT5G57550.1 xyloglucan endotransglucosylase/hydrolase 254.1e-1652.17Show/hide
Query:  YGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF
        +     T  DI+WGD RG+++NN EL+ LSLD  S SGFQ+K EYL+ K+ M++KLV GN  GTVT  +
Subjt:  YGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF

AT5G57560.1 Xyloglucan endotransglucosylase/hydrolase family protein7.5e-1852.33Show/hide
Query:  LARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF
        L  L  + I+  S  A++  D    ++I+WGD RG++ NN EL+ LSLD  S SGFQSKNEYL+ K+ M+MKLV GN  GTVTTL+
Subjt:  LARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACATGAATTATCTTCTTCTTATTCGACGTCGTCGTCAAATACTTTGGCACGCCTTCTATTTGCTTACATTTTGTTGTGTTCGTGGCATGCTTCGTATGGCAATGA
CTTATCGACGTCGATCGACATTAGCTGGGGGGATGAGCGAGGCGAGATGGTCAACAATAATGAGCTTGTGATTCTCAGCTTGGATAACTACTCAAGCTCGGGGTTTCAAT
CGAAGAACGAGTACTTATATGCTAAGCTAGGAATGGAAATGAAGCTTGTTGCTGGGAACCCTACCGGAACCGTGACTACATTGTTTAGTCATGTCCTAAGGATATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAACATGAATTATCTTCTTCTTATTCGACGTCGTCGTCAAATACTTTGGCACGCCTTCTATTTGCTTACATTTTGTTGTGTTCGTGGCATGCTTCGTATGGCAATGA
CTTATCGACGTCGATCGACATTAGCTGGGGGGATGAGCGAGGCGAGATGGTCAACAATAATGAGCTTGTGATTCTCAGCTTGGATAACTACTCAAGCTCGGGGTTTCAAT
CGAAGAACGAGTACTTATATGCTAAGCTAGGAATGGAAATGAAGCTTGTTGCTGGGAACCCTACCGGAACCGTGACTACATTGTTTAGTCATGTCCTAAGGATATGA
Protein sequenceShow/hide protein sequence
MKHELSSSYSTSSSNTLARLLFAYILLCSWHASYGNDLSTSIDISWGDERGEMVNNNELVILSLDNYSSSGFQSKNEYLYAKLGMEMKLVAGNPTGTVTTLFSHVLRI