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Carg23523 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23523
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionFerredoxin
Genome locationCarg_Chr14:12697522..12697965
RNA-Seq ExpressionCarg23523
SyntenyCarg23523
Gene Ontology termsGO:0022900 - electron transport chain (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0009055 - electron transfer activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051537 - 2 iron, 2 sulfur cluster binding (molecular function)
InterPro domainsIPR001041 - 2Fe-2S ferredoxin-type iron-sulfur binding domain
IPR010241 - Ferredoxin [2Fe-2S], plant
IPR012675 - Beta-grasp domain superfamily
IPR036010 - 2Fe-2S ferredoxin-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582296.1 Ferredoxin C 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.9e-7598.64Show/hide
Query:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD
        MATLHFVPSAFSLPKQKQPTKLSSVFKLR TTQ+GCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD
Subjt:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD

Query:  QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND
        QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND

XP_004134137.1 ferredoxin C 1, chloroplastic [Cucumis sativus]1.1e-6689.8Show/hide
Query:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD
        MATLHFVPSAFSLPKQKQP KLSSV   RPTTQ+ CS+RRLVVRSYKVVIEHEGQTTELEVD DESIL SALD GL+IPHDCKLGVCMTCPARLVSG VD
Subjt:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD

Query:  QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND
        QSEGMLSDDVV +GYSLLCVAYPRSDCHI+TIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND

XP_022956084.1 uncharacterized protein LOC111457884 [Cucurbita moschata]2.0e-76100Show/hide
Query:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD
        MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD
Subjt:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD

Query:  QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND
        QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND

XP_022979429.1 uncharacterized protein LOC111479154 [Cucurbita maxima]1.1e-7497.96Show/hide
Query:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD
        MATLHFVPSAFSLPKQKQPTKLSSVFKLR TTQ+GCSQRRLVVRSYKVVIEHEGQTTELEVDADESIL+SALDKGLDIPHDCKLGVCMTCPARLVSGAVD
Subjt:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD

Query:  QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND
        QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND

XP_023526556.1 uncharacterized protein LOC111790026 [Cucurbita pepo subsp. pepo]3.5e-7699.32Show/hide
Query:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD
        MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQ+GCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD
Subjt:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD

Query:  QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND
        QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND

TrEMBL top hitse value%identityAlignment
A0A0A0L4U6 Ferredoxin5.4e-6789.8Show/hide
Query:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD
        MATLHFVPSAFSLPKQKQP KLSSV   RPTTQ+ CS+RRLVVRSYKVVIEHEGQTTELEVD DESIL SALD GL+IPHDCKLGVCMTCPARLVSG VD
Subjt:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD

Query:  QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND
        QSEGMLSDDVV +GYSLLCVAYPRSDCHI+TIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND

A0A1S3AX36 Ferredoxin9.2e-6789.12Show/hide
Query:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD
        MATLHFVPSAFSLPKQKQP KLSSV   +PTT + CS+RRLVVRSYKVVIEHEGQTTELEVD DESIL SALD GL+IPHDCKLGVCMTCPARLVSG VD
Subjt:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD

Query:  QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND
        QSEGMLSDDVVE+GYSLLCVAYPRSDCHI+TIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND

A0A5D3D1U0 Ferredoxin9.2e-6789.12Show/hide
Query:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD
        MATLHFVPSAFSLPKQKQP KLSSV   +PTT + CS+RRLVVRSYKVVIEHEGQTTELEVD DESIL SALD GL+IPHDCKLGVCMTCPARLVSG VD
Subjt:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD

Query:  QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND
        QSEGMLSDDVVE+GYSLLCVAYPRSDCHI+TIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND

A0A6J1GY17 Ferredoxin9.9e-77100Show/hide
Query:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD
        MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD
Subjt:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD

Query:  QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND
        QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND

A0A6J1IWL8 Ferredoxin5.4e-7597.96Show/hide
Query:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD
        MATLHFVPSAFSLPKQKQPTKLSSVFKLR TTQ+GCSQRRLVVRSYKVVIEHEGQTTELEVDADESIL+SALDKGLDIPHDCKLGVCMTCPARLVSGAVD
Subjt:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVD

Query:  QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND
        QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND

SwissProt top hitse value%identityAlignment
O23344 Ferredoxin C 1, chloroplastic1.3e-4462.33Show/hide
Query:  SAFSLPKQKQPTKLSSVFKLRPTTQLGCSQR-------RLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQ
        S  SLPK       S  F LR  T    + R       R++ R+YKVV+EH+G+TTELEV+ DE+IL  ALD GLD+P+DC LGVCMTCPA+LV+G VDQ
Subjt:  SAFSLPKQKQPTKLSSVFKLRPTTQLGCSQR-------RLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQ

Query:  SEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND
        S GMLSDDVVE+GY+LLC +YP SDCHI+ IPEEELL+LQLATAND
Subjt:  SEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND

P00248 Ferredoxin2.1e-2051.04Show/hide
Query:  SYKVVI--EHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQS-EGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEEL
        +YKV +  E EG    +EV  D+ ILD+A + G+D+P+ C+ G C TC  +L+SG VDQS +  L DD +E GY L CVAYP SDC I+T  EEEL
Subjt:  SYKVVI--EHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQS-EGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEEL

P00252 Ferredoxin-14.3e-2153.19Show/hide
Query:  YKV-VIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQS-EGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEEL
        YKV +++ EG  T ++V  DE ILD A D+GLD+P+ C+ G C TC  ++VSG VDQS +  L DD +EKGY L CVAYP SD  I+T  EE+L
Subjt:  YKV-VIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQS-EGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEEL

P08451 Ferredoxin-25.7e-2148.98Show/hide
Query:  SYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGM-LSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQ
        +Y+V + ++GQ+     D+D+S+LDSA   G+D+P  C  GVC TC AR++SG VDQ + M +  +  ++GY+LLCVAYPRSD  I+T  E+EL ALQ
Subjt:  SYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGM-LSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQ

P0A3D0 Ferredoxin-12.1e-2051.58Show/hide
Query:  SYKV-VIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQS-EGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEEL
        +YKV ++  +G  T ++V  DE ILD A ++GLD+P  C+ G C TC  +L+ G VDQS +  L DD +EKG+ L CVAYPRSDC I T  EEEL
Subjt:  SYKV-VIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQS-EGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEEL

Arabidopsis top hitse value%identityAlignment
AT1G10960.1 ferredoxin 13.9e-1737.32Show/hide
Query:  VPSAFSLPKQKQPTKL--------SSVFKLRPTTQLGCSQRRLVVRSYKV-VIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSG
        + S   L +Q+ P  L         S+F L+ +T  G   R   + +YKV  I  EG+  E+E + D  +LD+A + GLD+P+ C+ G C +C  ++VSG
Subjt:  VPSAFSLPKQKQPTKL--------SSVFKLRPTTQLGCSQRRLVVRSYKV-VIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSG

Query:  AVDQS-EGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELL
        ++DQS +  L D+ + +GY L CVAYP SD  I+T  EE ++
Subjt:  AVDQS-EGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELL

AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein1.5e-1640.17Show/hide
Query:  SVFKLRPTTQLGCSQRRLVVRSYKV-VIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQS-EGMLSDDVVEKGYSLLCVA
        S+F L+  T  G   R   + +YKV  I  EG+  E+E D D  +LD+A + G+D+P+ C+ G C +C  ++VSG+VDQS +  L D+ + +G+ L C A
Subjt:  SVFKLRPTTQLGCSQRRLVVRSYKV-VIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQS-EGMLSDDVVEKGYSLLCVA

Query:  YPRSDCHIQTIPEEELL
        YP SD  I+T  EE+++
Subjt:  YPRSDCHIQTIPEEELL

AT2G27510.1 ferredoxin 37.6e-2152.13Show/hide
Query:  YKV-VIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEG-MLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEEL
        YKV ++  +GQ  E EV  D+ ILD+A + G+D+P+ C+ G C TC  ++VSG VDQS+G  L D  +EKGY L CVAYP+SDC I T  E EL
Subjt:  YKV-VIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEG-MLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEEL

AT4G14890.1 2Fe-2S ferredoxin-like superfamily protein8.9e-4662.33Show/hide
Query:  SAFSLPKQKQPTKLSSVFKLRPTTQLGCSQR-------RLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQ
        S  SLPK       S  F LR  T    + R       R++ R+YKVV+EH+G+TTELEV+ DE+IL  ALD GLD+P+DC LGVCMTCPA+LV+G VDQ
Subjt:  SAFSLPKQKQPTKLSSVFKLRPTTQLGCSQR-------RLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQ

Query:  SEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND
        S GMLSDDVVE+GY+LLC +YP SDCHI+ IPEEELL+LQLATAND
Subjt:  SEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND

AT5G10000.1 ferredoxin 45.1e-1738.28Show/hide
Query:  PTKLSSVFKLRPTTQLGCSQRR------LVVRSYKV-VIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEG-MLSDDV
        P++     +L  TT  G S  R          S KV +I  EG+  E+E + D  IL+SA + GL++P+ C+ G C TC  +LVSG VDQS G  L ++ 
Subjt:  PTKLSSVFKLRPTTQLGCSQRR------LVVRSYKV-VIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEG-MLSDDV

Query:  VEKGYSLLCVAYPRSDCHIQTIPEEELL
        ++KGY L C+A P  DC + T  + +L+
Subjt:  VEKGYSLLCVAYPRSDCHIQTIPEEELL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACTCTTCATTTTGTGCCATCCGCTTTCTCTCTACCAAAACAAAAGCAACCCACCAAGCTTTCCTCAGTCTTCAAGCTCAGACCCACAACCCAGTTAGGCTGCTC
ACAGCGGCGCTTGGTGGTCCGGTCGTACAAAGTGGTGATCGAGCACGAGGGGCAGACCACAGAGCTGGAGGTGGATGCCGACGAGAGCATATTGGACAGCGCATTGGACA
AAGGGTTAGACATTCCTCACGATTGCAAGCTTGGGGTGTGCATGACTTGCCCTGCTCGCCTTGTCAGTGGCGCCGTGGACCAGAGCGAAGGCATGCTGAGCGATGATGTT
GTGGAGAAAGGGTATTCGCTTCTGTGTGTGGCTTATCCCCGCTCAGACTGCCACATCCAAACCATCCCTGAGGAGGAATTGTTGGCACTTCAATTAGCCACAGCTAATGA
CTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACTCTTCATTTTGTGCCATCCGCTTTCTCTCTACCAAAACAAAAGCAACCCACCAAGCTTTCCTCAGTCTTCAAGCTCAGACCCACAACCCAGTTAGGCTGCTC
ACAGCGGCGCTTGGTGGTCCGGTCGTACAAAGTGGTGATCGAGCACGAGGGGCAGACCACAGAGCTGGAGGTGGATGCCGACGAGAGCATATTGGACAGCGCATTGGACA
AAGGGTTAGACATTCCTCACGATTGCAAGCTTGGGGTGTGCATGACTTGCCCTGCTCGCCTTGTCAGTGGCGCCGTGGACCAGAGCGAAGGCATGCTGAGCGATGATGTT
GTGGAGAAAGGGTATTCGCTTCTGTGTGTGGCTTATCCCCGCTCAGACTGCCACATCCAAACCATCCCTGAGGAGGAATTGTTGGCACTTCAATTAGCCACAGCTAATGA
CTGA
Protein sequenceShow/hide protein sequence
MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELEVDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDV
VEKGYSLLCVAYPRSDCHIQTIPEEELLALQLATAND