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Carg23526 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23526
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRNA-directed RNA polymerase
Genome locationCarg_Chr14:12690428..12691063
RNA-Seq ExpressionCarg23526
SyntenyCarg23526
Gene Ontology termsGO:0001172 - transcription, RNA-templated (biological process)
GO:0003968 - RNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2014580.1 hypothetical protein ES319_D09G235500v1 [Gossypium barbadense]3.8e-1676.36Show/hide
Query:  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLLTVVALSISA
        MGWLQS FSPLKKLWFRLHS+ +KRRGIYILYEDVKSCPCEDVH+L  + +  +A
Subjt:  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLLTVVALSISA

KAG0474071.1 hypothetical protein HPP92_015928 [Vanilla planifolia]6.5e-1686.96Show/hide
Query:  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLL
        MGWLQS FSPLKKLW R+HS++KKRRGIYILYEDVKSCPCEDVH+L
Subjt:  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLL

KAG6597448.1 hypothetical protein SDJN03_10628, partial [Cucurbita argyrosperma subsp. sororia]1.7e-1691.3Show/hide
Query:  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLL
        MGWLQS FSPLKKLWFRLHSS +KRRGIYILYEDVKSCPCEDVH+L
Subjt:  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLL

KAG7018705.1 hypothetical protein SDJN02_20576, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-25100Show/hide
Query:  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLLTVVALSISAVVVAVEF
        MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLLTVVALSISAVVVAVEF
Subjt:  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLLTVVALSISAVVVAVEF

KGN56989.1 hypothetical protein Csa_010650 [Cucumis sativus]5.9e-1793.48Show/hide
Query:  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLL
        MGWLQS FSPLKKLWFRLHSS KKRRGIYILYEDVKSCPCEDVH+L
Subjt:  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLL

TrEMBL top hitse value%identityAlignment
A0A0A0L7K5 Uncharacterized protein2.8e-1793.48Show/hide
Query:  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLL
        MGWLQS FSPLKKLWFRLHSS KKRRGIYILYEDVKSCPCEDVH+L
Subjt:  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLL

A0A5D2FCQ0 Uncharacterized protein1.8e-1676.36Show/hide
Query:  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLLTVVALSISA
        MGWLQS FSPLKKLWFRLHS+ +KRRGIYILYEDVKSCPCEDVH+L  + +  +A
Subjt:  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLLTVVALSISA

A0A5D2P7I4 Uncharacterized protein1.8e-1676.36Show/hide
Query:  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLLTVVALSISA
        MGWLQS FSPLKKLWFRLHS+ +KRRGIYILYEDVKSCPCEDVH+L  + +  +A
Subjt:  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLLTVVALSISA

A0A5D2Y1R9 Uncharacterized protein1.8e-1676.36Show/hide
Query:  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLLTVVALSISA
        MGWLQS FSPLKKLWFRLHS+ +KRRGIYILYEDVKSCPCEDVH+L  + +  +A
Subjt:  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLLTVVALSISA

A0A5J5Q976 Uncharacterized protein1.8e-1676.36Show/hide
Query:  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLLTVVALSISA
        MGWLQS FSPLKKLWFRLHS+ +KRRGIYILYEDVKSCPCEDVH+L  + +  +A
Subjt:  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLLTVVALSISA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTGGCTCCAATCCTTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGACTCCATTCTTCGTCGAAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTCAAATC
ATGTCCCTGTGAAGATGTGCATCTTCTTACAGTAGTTGCCTTGTCCATTTCAGCAGTTGTAGTGGCAGTTGAATTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGTGGCTCCAATCCTTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGACTCCATTCTTCGTCGAAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTCAAATC
ATGTCCCTGTGAAGATGTGCATCTTCTTACAGTAGTTGCCTTGTCCATTTCAGCAGTTGTAGTGGCAGTTGAATTCTAA
Protein sequenceShow/hide protein sequence
MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLLTVVALSISAVVVAVEF