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Carg23540 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23540
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
Genome locationCarg_Chr06:3521957..3522229
RNA-Seq ExpressionCarg23540
SyntenyCarg23540
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4308617.1 unnamed protein product [Prunus armeniaca]5.9e-1863.29Show/hide
Query:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAG
        MEIP K+ KF+FHFL AL LCLTL+++ L+APR L+++AYFWPL LSTALFL AV++F   +LP  + +GEGLL+YVAG
Subjt:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAG

KAG6577526.1 hypothetical protein SDJN03_25100, partial [Cucurbita argyrosperma subsp. sororia]4.6e-2377.01Show/hide
Query:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAGHLD--LDA
        MEIP KV KFRFH +AAL L L LFSL+LLAP+ LSL+A+FWPLLLSTALFLLAVLLF N SLP PDK  EGLLNYVAGH D  LDA
Subjt:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAGHLD--LDA

KAG6596766.1 hypothetical protein SDJN03_09946, partial [Cucurbita argyrosperma subsp. sororia]4.6e-3998.89Show/hide
Query:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAGHLDLDASLKTD
        MEIPSKVW+FRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAGHLDLDASLKTD
Subjt:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAGHLDLDASLKTD

KAG7028299.1 hypothetical protein SDJN02_09480, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-39100Show/hide
Query:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAGHLDLDASLKTD
        MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAGHLDLDASLKTD
Subjt:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAGHLDLDASLKTD

KGN56016.1 hypothetical protein Csa_010324 [Cucumis sativus]1.0e-2578.02Show/hide
Query:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAGHLDLD-ASLKTD
        MEIPSKV KFRFH L  L L LTLFSL LLAP  LSL+AYFWPL LSTALFLLAVLLFAN SLP PDK  EGLL+YVAGH DLD +SLK+D
Subjt:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAGHLDLD-ASLKTD

TrEMBL top hitse value%identityAlignment
A0A0A0L7E9 Uncharacterized protein4.8e-2678.02Show/hide
Query:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAGHLDLD-ASLKTD
        MEIPSKV KFRFH L  L L LTLFSL LLAP  LSL+AYFWPL LSTALFLLAVLLFAN SLP PDK  EGLL+YVAGH DLD +SLK+D
Subjt:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAGHLDLD-ASLKTD

A0A314XNV4 Uncharacterized protein2.8e-1863.29Show/hide
Query:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAG
        MEIP K+ KF+FHFL AL LCLTL+++ L+APR L+++AYFWPL LSTALFL AV++F   +LP  + +GEGLL+YVAG
Subjt:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAG

A0A371EZD3 Uncharacterized protein (Fragment)2.8e-1861.22Show/hide
Query:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANAS-LPPPDKT-----GEGLLNYVAGH--LDLDASLKTD
        MEIP KV KFRFHFL AL  CLTLFSL+L+APR ++L+AYFWPL LSTA+ L  V  FA  S LP  D T     G+GLL+YVAGH  L LD   K+D
Subjt:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANAS-LPPPDKT-----GEGLLNYVAGH--LDLDASLKTD

A0A5E4FSR9 PREDICTED: transmembrane2.8e-1863.29Show/hide
Query:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAG
        MEIP K+ KF+FHFL AL LCLTL+++ L+APR L+++AYFWPL LSTALFL AV++F   +LP  + +GEGLL+YVAG
Subjt:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAG

M5WI68 Uncharacterized protein2.8e-1863.29Show/hide
Query:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAG
        MEIP K+ KF+FHFL AL LCLTL+++ L+APR L+++AYFWPL LSTALFL AV++F   +LP  + +GEGLL+YVAG
Subjt:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G13175.1 unknown protein1.5e-0839.62Show/hide
Query:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKT------------GEGLLNYVAG--HLDL--D
        ME   K+ KF+   + A  L L   +LV  +P  L++++YFWPL LSTALFL AV  FA  S  P   T             EG+L+YV G  H D+  D
Subjt:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKT------------GEGLLNYVAG--HLDL--D

Query:  ASLKTD
        +  K D
Subjt:  ASLKTD

AT4G16400.1 unknown protein8.8e-1244.3Show/hide
Query:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAG
        MEI +K+ ++RFHF+  + + + + SLV  APR+L+++AYFWPL  STA FL   + F        + TGE L++YVAG
Subjt:  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATCCCTAGCAAAGTGTGGAAGTTCAGATTCCATTTCTTGGCTGCTCTAACTCTATGCCTTACACTCTTCTCCCTCGTCCTCCTCGCTCCTAGATTGCTCTCTCT
CGTCGCCTACTTTTGGCCTCTCCTCCTCTCCACCGCGCTCTTCCTCCTCGCTGTCCTCCTCTTCGCCAACGCCTCTCTCCCGCCGCCGGATAAAACCGGTGAAGGCCTTC
TCAACTATGTCGCCGGCCATCTCGACCTAGACGCCTCGCTCAAGACTGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATCCCTAGCAAAGTGTGGAAGTTCAGATTCCATTTCTTGGCTGCTCTAACTCTATGCCTTACACTCTTCTCCCTCGTCCTCCTCGCTCCTAGATTGCTCTCTCT
CGTCGCCTACTTTTGGCCTCTCCTCCTCTCCACCGCGCTCTTCCTCCTCGCTGTCCTCCTCTTCGCCAACGCCTCTCTCCCGCCGCCGGATAAAACCGGTGAAGGCCTTC
TCAACTATGTCGCCGGCCATCTCGACCTAGACGCCTCGCTCAAGACTGATTAA
Protein sequenceShow/hide protein sequence
MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAGHLDLDASLKTD