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Carg23545 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23545
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRPM1-interacting protein 4 (RIN4) family protein
Genome locationCarg_Chr06:3461403..3463066
RNA-Seq ExpressionCarg23545
SyntenyCarg23545
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596757.1 Protein NOI4, partial [Cucurbita argyrosperma subsp. sororia]4.6e-2795.45Show/hide
Query:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVRCF
        MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQA + F
Subjt:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVRCF

KAG7028294.1 RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma]3.5e-51100Show/hide
Query:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVRCFERIFMYNCLLRDLPLVDALQCATMNACCCLDLIL
        MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVRCFERIFMYNCLLRDLPLVDALQCATMNACCCLDLIL
Subjt:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVRCFERIFMYNCLLRDLPLVDALQCATMNACCCLDLIL

Query:  NL
        NL
Subjt:  NL

XP_004148258.1 protein NOI4 [Cucumis sativus]1.1e-2386.36Show/hide
Query:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVRCF
        MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKK+GGQPESPG AP+AK  ADP KPQA + F
Subjt:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVRCF

XP_022950564.1 RPM1-interacting protein 4-like [Cucurbita moschata]4.6e-2795.45Show/hide
Query:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVRCF
        MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQA + F
Subjt:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVRCF

XP_038905925.1 protein NOI4-like [Benincasa hispida]4.8e-2487.88Show/hide
Query:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVRCF
        MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKK+GGQPESPG AP+AK AADP KPQA + F
Subjt:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVRCF

TrEMBL top hitse value%identityAlignment
A0A0A0L7F7 AvrRpt-cleavage domain-containing protein5.1e-2486.36Show/hide
Query:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVRCF
        MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKK+GGQPESPG AP+AK  ADP KPQA + F
Subjt:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVRCF

A0A1S3BL66 RPM1-interacting protein 4-like6.7e-2486.36Show/hide
Query:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVRCF
        MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKK+GGQPESPG AP+AK  ADP KPQA + F
Subjt:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVRCF

A0A5D3CRF8 RPM1-interacting protein 4-like1.7e-2288.71Show/hide
Query:  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVR
        EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKK+GGQPESPG AP+AK  ADP KPQA R
Subjt:  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVR

A0A6J1GG65 RPM1-interacting protein 4-like2.2e-2795.45Show/hide
Query:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVRCF
        MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQA + F
Subjt:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVRCF

A0A6P9E4Z8 protein NOI4-like5.3e-2167.5Show/hide
Query:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVRCFERIFMYNCLLRDLP
        MS+KGQPLPKFGEWDVN+PASAEGFTVIFNKARDEKK+GG+PESPGN    KP  D  KPQA + F       C ++D P
Subjt:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVRCFERIFMYNCLLRDLP

SwissProt top hitse value%identityAlignment
O22633 Protein NOI41.8e-1870.31Show/hide
Query:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKA---KPAADPAKPQ
        MS+KG+PLPKFGEWDVN+PASAEGFTVIFNKARDEKK+GG+P SPG + +        DP+KPQ
Subjt:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKA---KPAADPAKPQ

Q8GYN5 RPM1-interacting protein 43.8e-0842.19Show/hide
Query:  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVRCF
        EK   +PKFG+WD NNP+SA+G+T IFNK R+E+ SG         P  + + +P    +  CF
Subjt:  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVRCF

Arabidopsis top hitse value%identityAlignment
AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein1.8e-1678.26Show/hide
Query:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPG
        M++KG+PLPKFGEWDVN+P+SAEGFTVIFNKAR+EKK GG+ +SPG
Subjt:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPG

AT5G55850.1 RPM1-interacting protein 4 (RIN4) family protein3.4e-2068.66Show/hide
Query:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKA---KPAADPAKPQAVR
        MS+KG+PLPKFGEWDVN+PASAEGFTVIFNKARDEKK+GG+P SPG + +        DP+KPQ V+
Subjt:  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKA---KPAADPAKPQAVR

AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein3.8e-1967.69Show/hide
Query:  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKA---KPAADPAKPQAVR
        +KG+PLPKFGEWDVN+PASAEGFTVIFNKARDEKK+GG+P SPG + +        DP+KPQ V+
Subjt:  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKA---KPAADPAKPQAVR

AT5G55850.3 RPM1-interacting protein 4 (RIN4) family protein1.4e-1869.35Show/hide
Query:  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKA---KPAADPAKPQ
        +KG+PLPKFGEWDVN+PASAEGFTVIFNKARDEKK+GG+P SPG + +        DP+KPQ
Subjt:  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKA---KPAADPAKPQ

AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein6.9e-1377.78Show/hide
Query:  KGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKK----SGGQPES
        KG+PLPKFGEWDVNNPASAEGFTVIF+KA DEKK    SG  P S
Subjt:  KGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKK----SGGQPES


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGAGAAGGGTCAGCCACTACCTAAGTTTGGTGAATGGGATGTTAATAATCCTGCTTCAGCAGAGGGCTTCACTGTGATCTTTAATAAGGCAAGAGATGAGAAGAA
ATCCGGTGGCCAACCTGAATCACCTGGAAACGCGCCGAAGGCAAAACCTGCAGCTGATCCTGCCAAACCTCAGGCTGTAAGATGTTTTGAACGCATCTTTATGTATAATT
GTTTGTTGCGCGATTTACCGCTTGTTGATGCACTTCAATGTGCCACTATGAACGCATGTTGCTGCTTAGATCTGATATTGAATCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGAGAAGGGTCAGCCACTACCTAAGTTTGGTGAATGGGATGTTAATAATCCTGCTTCAGCAGAGGGCTTCACTGTGATCTTTAATAAGGCAAGAGATGAGAAGAA
ATCCGGTGGCCAACCTGAATCACCTGGAAACGCGCCGAAGGCAAAACCTGCAGCTGATCCTGCCAAACCTCAGGCTGTAAGATGTTTTGAACGCATCTTTATGTATAATT
GTTTGTTGCGCGATTTACCGCTTGTTGATGCACTTCAATGTGCCACTATGAACGCATGTTGCTGCTTAGATCTGATATTGAATCTCTAA
Protein sequenceShow/hide protein sequence
MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQAVRCFERIFMYNCLLRDLPLVDALQCATMNACCCLDLILNL