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Carg23563 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23563
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description54S ribosomal protein
Genome locationCarg_Chr16:9773856..9777815
RNA-Seq ExpressionCarg23563
SyntenyCarg23563
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR026569 - Ribosomal protein L28/L24


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577758.1 hypothetical protein SDJN03_25332, partial [Cucurbita argyrosperma subsp. sororia]1.5e-4194.12Show/hide
Query:  MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQRDQIEEGEADRGGSSEEVAGSEGGSHGGDGPQQWVA
        MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGS TQ DQIEEG+ADR GSSEEVAGSEGGSHG DGPQQ VA
Subjt:  MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQRDQIEEGEADRGGSSEEVAGSEGGSHGGDGPQQWVA

Query:  NA
        NA
Subjt:  NA

KAG7015795.1 hypothetical protein SDJN02_23433 [Cucurbita argyrosperma subsp. argyrosperma]3.4e-46100Show/hide
Query:  MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQRDQIEEGEADRGGSSEEVAGSEGGSHGGDGPQQWVA
        MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQRDQIEEGEADRGGSSEEVAGSEGGSHGGDGPQQWVA
Subjt:  MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQRDQIEEGEADRGGSSEEVAGSEGGSHGGDGPQQWVA

Query:  NA
        NA
Subjt:  NA

XP_022923524.1 uncharacterized protein LOC111431195 [Cucurbita moschata]3.0e-4295.1Show/hide
Query:  MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQRDQIEEGEADRGGSSEEVAGSEGGSHGGDGPQQWVA
        MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQ DQIEEG+ADR GSSEEVAGSEGGSHG DGPQQ VA
Subjt:  MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQRDQIEEGEADRGGSSEEVAGSEGGSHGGDGPQQWVA

Query:  NA
        NA
Subjt:  NA

XP_022965371.1 uncharacterized protein LOC111465250 [Cucurbita maxima]1.3e-3795.7Show/hide
Query:  MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQRDQIEEGEADRGGSSEEVAGSEGGSHGGD
        MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKE RRRMYGSSTQRDQIEEG+ADR GSSEEVAGSEGGSHG D
Subjt:  MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQRDQIEEGEADRGGSSEEVAGSEGGSHGGD

XP_023553194.1 uncharacterized protein LOC111810681 [Cucurbita pepo subsp. pepo]2.7e-4395.1Show/hide
Query:  MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQRDQIEEGEADRGGSSEEVAGSEGGSHGGDGPQQWVA
        MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQ DQIEEG+ADR  SSEEVAGSEGGSHGGDGPQQWV+
Subjt:  MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQRDQIEEGEADRGGSSEEVAGSEGGSHGGDGPQQWVA

Query:  NA
        NA
Subjt:  NA

TrEMBL top hitse value%identityAlignment
A0A1S3BK21 54S ribosomal protein L24, mitochondrial2.8e-3077.67Show/hide
Query:  MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQR-DQIEEGEADRGGSSEEVAGSEGGSHG-GDGPQQW
        MDTE+GLFWKAKIE LYEELG+MEVVFFSPEDEAKFEQ F+DLKLSERAARKEARR++YGSST + +QI+EG  D   SSEE A SEGGSHG  D  QQW
Subjt:  MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQR-DQIEEGEADRGGSSEEVAGSEGGSHG-GDGPQQW

Query:  VAN
        VAN
Subjt:  VAN

A0A5A7UFJ5 54S ribosomal protein L242.8e-3077.67Show/hide
Query:  MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQR-DQIEEGEADRGGSSEEVAGSEGGSHG-GDGPQQW
        MDTE+GLFWKAKIE LYEELG+MEVVFFSPEDEAKFEQ F+DLKLSERAARKEARR++YGSST + +QI+EG  D   SSEE A SEGGSHG  D  QQW
Subjt:  MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQR-DQIEEGEADRGGSSEEVAGSEGGSHG-GDGPQQW

Query:  VAN
        VAN
Subjt:  VAN

A0A6J1CUG4 uncharacterized protein LOC1110148727.6e-3683.5Show/hide
Query:  MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQRDQIEEGEADRGGSSEEVA-GSEGGSHGGDGPQQWV
        MDTEIGLFWKAKI KLYEELGQMEVVFFSPEDEAKFEQGFR+LKL+ERAARKEARR+ YGSS+  DQIEEG ADR G+ +E A GSEGGSHG DG QQWV
Subjt:  MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQRDQIEEGEADRGGSSEEVA-GSEGGSHGGDGPQQWV

Query:  ANA
        ANA
Subjt:  ANA

A0A6J1E6M9 uncharacterized protein LOC1114311951.4e-4295.1Show/hide
Query:  MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQRDQIEEGEADRGGSSEEVAGSEGGSHGGDGPQQWVA
        MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQ DQIEEG+ADR GSSEEVAGSEGGSHG DGPQQ VA
Subjt:  MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQRDQIEEGEADRGGSSEEVAGSEGGSHGGDGPQQWVA

Query:  NA
        NA
Subjt:  NA

A0A6J1HLI0 uncharacterized protein LOC1114652506.3e-3895.7Show/hide
Query:  MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQRDQIEEGEADRGGSSEEVAGSEGGSHGGD
        MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKE RRRMYGSSTQRDQIEEG+ADR GSSEEVAGSEGGSHG D
Subjt:  MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQRDQIEEGEADRGGSSEEVAGSEGGSHGGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G31460.1 Ribosomal L28 family1.3e-1653.33Show/hide
Query:  MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARR--RMYGSSTQRDQIEEGEADRGGSSEEVAGSEGG
        MDTE+GL+WK K+E  Y ELGQMEV FF+PEDEAK EQGF+DL ++++ AR+EARR  R  G   + D  EE   + GG SE     + G
Subjt:  MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARR--RMYGSSTQRDQIEEGEADRGGSSEEVAGSEGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAAATCGAGAAGCTGTACGAAGAACTCGGGCAGATGGAGGTCGTTTTCTTCTCACCGGAGGACGAAGCTAAATTTGA
ACAGGGCTTTAGAGACCTGAAATTATCCGAGAGGGCAGCACGAAAGGAGGCGAGAAGACGGATGTATGGTAGTTCGACCCAACGTGATCAGATCGAAGAGGGAGAAGCAG
ACCGTGGTGGATCTAGCGAGGAAGTTGCAGGTTCCGAAGGAGGCTCCCATGGTGGTGATGGTCCACAGCAATGGGTTGCCAACGCCTAA
mRNA sequenceShow/hide mRNA sequence
TTCCCATACAGCCACTGTATCCCGACCTCTCCCCACGCGCTGACTCTTCGCTGACGCCATCTCAACGGCTGCCGCCGCACGTTGCAGTCTCTAGCCTCCCGGCGATCTCA
GCCAACCGCCGCTCCCTCCGTTTCACAGTGTCTTCGCCTCACGAGTGATAACAGACAAACGGACTGTAACAACGCAAATTGCTTATGAAAACTCTATTCTTAAGCAAGTC
CTGCTGCACAAAATACAGTCCCCAACCTGTACCGTTTAGGAATTTCATCGAGCTTGATCTTCTGTCTGTAGAAGTTGTTGGCAGTAAATTCAAACTCATTTTCGCAGATC
GTTCTTACTTCTGTTCCTATTGTGTTTGGAGTATTTTTGGATCACAGCTGATTCTACAAGAGAAGAGTCGAAAATGGCTTTTAGAGGAAAGGAAATGATGAAGAAGATAT
GAAGAAGCGTTGGAGAAAACAATCTTGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACTCCAAAATAGTGATGATATAGGGCCTAGCGCGGTAGATTTGC
TGCCGTCACATCCCAATTCGTAACCGTATACATGAAGATGGTGGCAACAAGTCAAGAAGGAACTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGA
CCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGAATTGATGAGTATCTGCTGAAAACTCCATACCACAAAATGGACACTGAAA
TTGGGCTGTTTTGGAAGGCAAAAATCGAGAAGCTGTACGAAGAACTCGGGCAGATGGAGGTCGTTTTCTTCTCACCGGAGGACGAAGCTAAATTTGAACAGGGCTTTAGA
GACCTGAAATTATCCGAGAGGGCAGCACGAAAGGAGGCGAGAAGACGGATGTATGGTAGTTCGACCCAACGTGATCAGATCGAAGAGGGAGAAGCAGACCGTGGTGGATC
TAGCGAGGAAGTTGCAGGTTCCGAAGGAGGCTCCCATGGTGGTGATGGTCCACAGCAATGGGTTGCCAACGCCTAATTAATTATAGGACGACTTTTTTTCCAACTTGTGA
GTTCTTCAAGCCTGGACTCGTTCCTACCTTTTCATTGAAATCCTTTGTAGCTTATTTGTATTTGGTTTAATGTTAAATGTATTCAGATAGAAATGGGAATTGTTCTTTGG
AAATTGAGATGTGAAATCTTAAAACTTATTGTTCAATAAGATTAGGCTTAATATATGATTTCCCC
Protein sequenceShow/hide protein sequence
MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQRDQIEEGEADRGGSSEEVAGSEGGSHGGDGPQQWVANA