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Carg23596 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23596
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCalcium-binding EF-hand family protein
Genome locationCarg_Chr16:9576656..9578374
RNA-Seq ExpressionCarg23596
SyntenyCarg23596
Gene Ontology termsGO:0050790 - regulation of catalytic activity (biological process)
GO:0005509 - calcium ion binding (molecular function)
GO:0030234 - enzyme regulator activity (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577727.1 putative calcium-binding protein CML17, partial [Cucurbita argyrosperma subsp. sororia]3.6e-35100Show/hide
Query:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL
        MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL
Subjt:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL

KAG7015763.1 putative calcium-binding protein CML17, partial [Cucurbita argyrosperma subsp. argyrosperma]8.2e-72100Show/hide
Query:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPELWQQFEHEKLRCVPVNLFAV
        MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPELWQQFEHEKLRCVPVNLFAV
Subjt:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPELWQQFEHEKLRCVPVNLFAV

Query:  TGNKQQMGNIWTADDCNQHDDLVKKLKMVYGLSFEC
        TGNKQQMGNIWTADDCNQHDDLVKKLKMVYGLSFEC
Subjt:  TGNKQQMGNIWTADDCNQHDDLVKKLKMVYGLSFEC

XP_008448654.1 PREDICTED: probable calcium-binding protein CML18 [Cucumis melo]1.0e-3498.77Show/hide
Query:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL
        MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVAL EPEL
Subjt:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL

XP_022145375.1 probable calcium-binding protein CML18 [Momordica charantia]2.3e-3497.53Show/hide
Query:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL
        MSDKQPIKLDDEQ+AELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVAL EPEL
Subjt:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL

XP_022923350.1 probable calcium-binding protein CML18 [Cucurbita moschata]3.6e-35100Show/hide
Query:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL
        MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL
Subjt:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL

TrEMBL top hitse value%identityAlignment
A0A1S3BKU3 probable calcium-binding protein CML185.1e-3598.77Show/hide
Query:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL
        MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVAL EPEL
Subjt:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL

A0A5A7UCP8 Putative calcium-binding protein CML185.1e-3598.77Show/hide
Query:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL
        MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVAL EPEL
Subjt:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL

A0A6J1CUA8 probable calcium-binding protein CML181.1e-3497.53Show/hide
Query:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL
        MSDKQPIKLDDEQ+AELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVAL EPEL
Subjt:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL

A0A6J1EBJ4 probable calcium-binding protein CML181.7e-35100Show/hide
Query:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL
        MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL
Subjt:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL

A0A6J1HK10 probable calcium-binding protein CML181.7e-35100Show/hide
Query:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL
        MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL
Subjt:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL

SwissProt top hitse value%identityAlignment
Q6L5F4 Probable calcium-binding protein CML143.3e-1553.16Show/hide
Query:  PIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPELWQQ
        P +L   Q+ +LRE+FR FD N DGSLTQLEL +LLRSLGL+P+ D++  L+   D N NG VEF E  A   P L  Q
Subjt:  PIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPELWQQ

Q9AWK2 Probable calcium-binding protein CML118.3e-2763.11Show/hide
Query:  KQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPELWQQ---FEHEKLRCVPVNLFAV
        +Q   L D+Q+ ELREIFRSFDRN DGSLTQLELGSLLRSLGLKPS D+L++LI +ADTNSNGL+EFSEFVAL  PEL      +  +++R +  N+F  
Subjt:  KQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPELWQQ---FEHEKLRCVPVNLFAV

Query:  TGN
         GN
Subjt:  TGN

Q9FZ75 Probable calcium-binding protein CML158.1e-1454.93Show/hide
Query:  DEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL
        ++QI +L++IF  FD + DGSLT LEL +LLRSLGLKPS DQ+  L+   D+N NG VEF E V    P+L
Subjt:  DEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL

Q9LQN4 Probable calcium-binding protein CML179.8e-2880.25Show/hide
Query:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL
        MS K   KLD+EQI ELREIFRSFDRN DGSLTQLELGSLLR+LG+KPSPDQ E LI KADT SNGLVEF EFVAL  PEL
Subjt:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL

Q9M8U1 Probable calcium-binding protein CML189.8e-2881.58Show/hide
Query:  PIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL
        P KL DEQ+AELREIFRSFD+N DGSLT+LELGSLLRSLGLKPS DQL+ LI KAD N+NGLVEFSEFVAL EP+L
Subjt:  PIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL

Arabidopsis top hitse value%identityAlignment
AT1G18530.1 EF hand calcium-binding protein family5.7e-1554.93Show/hide
Query:  DEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL
        ++QI +L++IF  FD + DGSLT LEL +LLRSLGLKPS DQ+  L+   D+N NG VEF E V    P+L
Subjt:  DEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL

AT1G32250.1 Calcium-binding EF-hand family protein7.0e-2980.25Show/hide
Query:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL
        MS K   KLD+EQI ELREIFRSFDRN DGSLTQLELGSLLR+LG+KPSPDQ E LI KADT SNGLVEF EFVAL  PEL
Subjt:  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL

AT2G41100.1 Calcium-binding EF hand family protein8.3e-1447.83Show/hide
Query:  KLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVAL
        KL D+QI E RE FR FD+N DGS+T+ ELG+++RS+G KP+   L++L+ +AD + +G ++F EF+ +
Subjt:  KLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVAL

AT3G03000.1 EF hand calcium-binding protein family7.0e-2981.58Show/hide
Query:  PIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL
        P KL DEQ+AELREIFRSFD+N DGSLT+LELGSLLRSLGLKPS DQL+ LI KAD N+NGLVEFSEFVAL EP+L
Subjt:  PIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL

AT3G25600.1 Calcium-binding EF-hand family protein1.7e-1452.86Show/hide
Query:  EQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL
        +QI +L++IF  FD + DGSLTQLEL +LLRSLG+KP  DQ+  L+ + D N NG VEF E V    P++
Subjt:  EQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPEL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGACAAGCAACCGATTAAGTTAGACGACGAACAAATTGCGGAGTTGAGGGAAATCTTTCGGTCGTTCGATCGGAACAACGACGGGAGTTTGACTCAACTCGAACT
CGGATCGCTTTTACGATCACTTGGTTTGAAGCCGAGTCCGGATCAGCTTGAGAATTTAATAATGAAGGCCGATACGAACAGCAATGGATTAGTGGAATTTTCAGAGTTCG
TAGCTCTGGCGGAGCCGGAGCTGTGGCAACAATTTGAGCATGAAAAACTAAGGTGTGTGCCTGTAAATCTTTTTGCAGTGACTGGAAACAAACAGCAAATGGGTAATATT
TGGACGGCAGATGACTGTAACCAACATGACGATCTTGTCAAGAAATTGAAAATGGTTTATGGGTTAAGTTTTGAATGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGACAAGCAACCGATTAAGTTAGACGACGAACAAATTGCGGAGTTGAGGGAAATCTTTCGGTCGTTCGATCGGAACAACGACGGGAGTTTGACTCAACTCGAACT
CGGATCGCTTTTACGATCACTTGGTTTGAAGCCGAGTCCGGATCAGCTTGAGAATTTAATAATGAAGGCCGATACGAACAGCAATGGATTAGTGGAATTTTCAGAGTTCG
TAGCTCTGGCGGAGCCGGAGCTGTGGCAACAATTTGAGCATGAAAAACTAAGGTGTGTGCCTGTAAATCTTTTTGCAGTGACTGGAAACAAACAGCAAATGGGTAATATT
TGGACGGCAGATGACTGTAACCAACATGACGATCTTGTCAAGAAATTGAAAATGGTTTATGGGTTAAGTTTTGAATGTTGA
Protein sequenceShow/hide protein sequence
MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPELWQQFEHEKLRCVPVNLFAVTGNKQQMGNI
WTADDCNQHDDLVKKLKMVYGLSFEC