CuGenDBv2

Gene ID	Carg23639
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	mediator of RNA polymerase II transcription subunit 32-like
Genome location	Carg_Chr20:4378542..4379009
RNA-Seq Expression	Carg23639
Synteny	Carg23639
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0009631 - cold acclimation (biological process) GO:0010150 - leaf senescence (biological process) GO:0048364 - root development (biological process) GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR033244 - Mediator of RNA polymerase II transcription subunit 32

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6571130.1 Mediator of RNA polymerase II transcription subunit 32, partial [Cucurbita argyrosperma subsp. sororia]

4.6e-71

99.36

Show/hide

Query:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPI
        MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPI
Subjt:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPI

Query:  SAVRLEQMSKAVRWLVIELQHGSG-AAAAAAAAASASAHSHPSAPFDARFTEDATQ
        SAVRLEQMSKAVRWLVIELQHGSG AAAAAAAAASASAHSHPSAPFDARFTEDATQ
Subjt:  SAVRLEQMSKAVRWLVIELQHGSG-AAAAAAAAASASAHSHPSAPFDARFTEDATQ

KAG7010941.1 Mediator of RNA polymerase II transcription subunit 32, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.9e-72

100

Show/hide

Query:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPI
        MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPI
Subjt:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPI

Query:  SAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ
        SAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ
Subjt:  SAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ

XP_022944394.1 mediator of RNA polymerase II transcription subunit 32-like [Cucurbita moschata]

1.4e-67

96.77

Show/hide

Query:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPI
        MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLA KSGQ AAATTTGLPPI
Subjt:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPI

Query:  SAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ
        SAVRLEQMSKAVRWLVIELQHGSG   AAAAAASASAHSHPSAPFDARFTEDATQ
Subjt:  SAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ

XP_023512843.1 mediator of RNA polymerase II transcription subunit 32-like isoform X1 [Cucurbita pepo subsp. pepo]

1.9e-69

97.44

Show/hide

Query:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAA-ATTTGLPP
        MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLA KSGQAAA A T GLPP
Subjt:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAA-ATTTGLPP

Query:  ISAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ
        ISAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ
Subjt:  ISAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ

XP_023512845.1 mediator of RNA polymerase II transcription subunit 32-like isoform X2 [Cucurbita pepo subsp. pepo]

1.9e-69

97.44

Show/hide

Query:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAA-ATTTGLPP
        MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLA KSGQAAA A T GLPP
Subjt:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAA-ATTTGLPP

Query:  ISAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ
        ISAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ
Subjt:  ISAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LIN7 Uncharacterized protein

3.8e-63

90.97

Show/hide

Query:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPI
        MDSLVDSLNNAYQEFV+GAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLA KSGQ+A   TT LPPI
Subjt:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPI

Query:  SAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ
        SAVRLEQMSKAVRWLVIELQHGSG      AAASASAHSH SAPFDARFTEDATQ
Subjt:  SAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ

A0A5A7TWZ7 Mediator of RNA polymerase II transcription subunit 32

2.2e-63

90.97

Show/hide

Query:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPI
        MDSLVDSLNNAYQEFV+GAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLA KSGQ+    TTGLPPI
Subjt:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPI

Query:  SAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ
        SAVRLEQMSKAVRWLVIELQHGSG      AAASASAHSH SAPFDARFTEDATQ
Subjt:  SAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ

A0A6J1FUB1 mediator of RNA polymerase II transcription subunit 32-like

6.7e-68

96.77

Show/hide

Query:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPI
        MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLA KSGQ AAATTTGLPPI
Subjt:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPI

Query:  SAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ
        SAVRLEQMSKAVRWLVIELQHGSG   AAAAAASASAHSHPSAPFDARFTEDATQ
Subjt:  SAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ

A0A6J1JEJ1 mediator of RNA polymerase II transcription subunit 32-like isoform X1

5.7e-67

94.84

Show/hide

Query:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPI
        MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLA KSGQ AAATTTGLPPI
Subjt:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPI

Query:  SAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ
        SA+RLEQMSKAVRWLVIELQHGSG     AAAASASAHSHPSAPFDARFTEDATQ
Subjt:  SAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ

A0A6J1JH28 mediator of RNA polymerase II transcription subunit 32-like isoform X2

5.7e-67

94.84

Show/hide

Query:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPI
        MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLA KSGQ AAATTTGLPPI
Subjt:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPI

Query:  SAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ
        SA+RLEQMSKAVRWLVIELQHGSG     AAAASASAHSHPSAPFDARFTEDATQ
Subjt:  SAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ

SwissProt top hits

e value

%identity

Alignment

Q84VW5 Mediator of RNA polymerase II transcription subunit 32

1.3e-44

66.67

Show/hide

Query:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG-SLASKSGQAAAATT---TG
        MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEEFVESVKQRIGSECLVDEATG +  +  GQA AA T   T 
Subjt:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG-SLASKSGQAAAATT---TG

Query:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ
        LPPISAVRLEQMS+AVRWLV+ELQ GSG        A  S HS  S  FD+RF+ED+TQ
Subjt:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G11760.1 MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

9.4e-46

66.67

Show/hide

Query:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG-SLASKSGQAAAATT---TG
        MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEEFVESVKQRIGSECLVDEATG +  +  GQA AA T   T 
Subjt:  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG-SLASKSGQAAAATT---TG

Query:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ
        LPPISAVRLEQMS+AVRWLV+ELQ GSG        A  S HS  S  FD+RF+ED+TQ
Subjt:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATAGCTTAGTGGACTCTTTAAATAACGCATATCAGGAGTTCGTTTCTGGAGCAGCCAATGTCCTTGAAGCAAATGAGGCCTCAGGGGCTCAGAAGACAGCAGCAAC
CGATGCGGCTCTTGAAAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCAAGCAGAGGAATTTGTGGAGTCTGTGAAGCAAAGGATAGGATCAGAGTGCC
TTGTTGATGAGGCCACTGGTTCACTGGCTAGCAAGTCTGGGCAGGCCGCCGCCGCCACCACCACCGGCCTTCCTCCGATCAGCGCCGTTCGGTTGGAACAGATGAGCAAA
GCTGTGAGATGGCTTGTGATTGAGCTGCAGCATGGGTCAGGAGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGCTTCAGCACACTCCCACCCTTCTGCTCCCTTTGATGC
TAGATTTACTGAGGATGCAACACAATAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSK
AVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ

Carg23639 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome