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Carg23647 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23647
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCytochrome c oxidase
Genome locationCarg_Chr03:2826012..2827025
RNA-Seq ExpressionCarg23647
SyntenyCarg23647
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0045277 - respiratory chain complex IV (cellular component)
InterPro domainsIPR003213 - Cytochrome c oxidase, subunit VIb
IPR036549 - Cytochrome c oxidase, subunit VIb superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7033616.1 Cytochrome c oxidase subunit 6b-1, partial [Cucurbita argyrosperma subsp. argyrosperma]6.8e-58100Show/hide
Query:  MSAPQRPRDISKVARGEQAPRPVHEYGTVVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELG
        MSAPQRPRDISKVARGEQAPRPVHEYGTVVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELG
Subjt:  MSAPQRPRDISKVARGEQAPRPVHEYGTVVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELG

Query:  IFPGPI
        IFPGPI
Subjt:  IFPGPI

XP_022932983.1 cytochrome c oxidase subunit 6b-3-like [Cucurbita moschata]1.3e-4870.92Show/hide
Query:  MSAPQRPRDISKVARGEQAPRPVHEYGT-----------------------------------VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQ
        MSAPQRPRDISKVARGEQAPRPVHEYGT                                   VVV EGVETAPNDMRFPFTNQTRHCYTRYLEYHS +Q
Subjt:  MSAPQRPRDISKVARGEQAPRPVHEYGT-----------------------------------VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQ

Query:  KKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI
        KKG+HAPEC+KFAKYYRSLCP EWIEKWNEQRELGIFPGPI
Subjt:  KKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI

XP_022973259.1 cytochrome c oxidase subunit 6b-3-like [Cucurbita maxima]2.2e-4869.72Show/hide
Query:  MSAPQRPRDISKVARGEQAPRPVHEYGT------------------------------------VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCV
        MSAPQRPRDISKVARGEQAPRPVHEYGT                                    VVV EGVETAPNDMRFPFTNQTRHCYTRYLEYHSC+
Subjt:  MSAPQRPRDISKVARGEQAPRPVHEYGT------------------------------------VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCV

Query:  QKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI
        QKKG+H PEC+KFAKYYRSLCPA+WIEKWNEQRELGIFPG I
Subjt:  QKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI

XP_023542925.1 cytochrome c oxidase subunit 6b-3-like isoform X1 [Cucurbita pepo subsp. pepo]1.5e-4970.63Show/hide
Query:  MSAPQRPRDISKVARGEQAPRPVHEYGT-------------------------------------VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSC
        MSAPQRPRDISKVARGEQAPRPVHEYGT                                     VVV EGVETAPNDMRFPFTNQTRHCYTRYL+YHSC
Subjt:  MSAPQRPRDISKVARGEQAPRPVHEYGT-------------------------------------VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSC

Query:  VQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI
        V+KKG+HAPEC+KFAKYYRSLCPAEWIEKWNEQRELGIFPGPI
Subjt:  VQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI

XP_023542926.1 cytochrome c oxidase subunit 6b-3-like isoform X2 [Cucurbita pepo subsp. pepo]1.2e-4971.13Show/hide
Query:  MSAPQRPRDISKVARGEQAPRPVHEYGT------------------------------------VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCV
        MSAPQRPRDISKVARGEQAPRPVHEYGT                                    VVV EGVETAPNDMRFPFTNQTRHCYTRYL+YHSCV
Subjt:  MSAPQRPRDISKVARGEQAPRPVHEYGT------------------------------------VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCV

Query:  QKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI
        +KKG+HAPEC+KFAKYYRSLCPAEWIEKWNEQRELGIFPGPI
Subjt:  QKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI

TrEMBL top hitse value%identityAlignment
A0A0A0LEH8 Uncharacterized protein7.4e-4262.04Show/hide
Query:  RPRDISKVARGEQAPRPVHEYGT------------------------------------VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGK
        R RD+SKVARGEQAPRP HEYGT                                    VV+ EGV TAP+D+RFPFTNQTRHCY RYLEYH CVQKKG+
Subjt:  RPRDISKVARGEQAPRPVHEYGT------------------------------------VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGK

Query:  HAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI
        HAPEC KFAKYYRSLCP EW+EKWNEQRELG+FPGP+
Subjt:  HAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI

A0A1S3CQ05 putative cytochrome c oxidase subunit 6b-like5.1e-4363.7Show/hide
Query:  RPRDISKVARGEQAPRPVHEYGT----------------------------------VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHA
        R RD+SKVARGEQAPRP HEYGT                                  VV+ EGVETAP+D+RFPFTNQTRHCY RYLEYH CVQKKG+HA
Subjt:  RPRDISKVARGEQAPRPVHEYGT----------------------------------VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHA

Query:  PECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI
        PEC KFA YYRSLCP EW+EKWNEQRELG+FPGPI
Subjt:  PECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI

A0A5D3E4S8 Putative cytochrome c oxidase subunit 6b-like5.1e-4363.7Show/hide
Query:  RPRDISKVARGEQAPRPVHEYGT----------------------------------VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHA
        R RD+SKVARGEQAPRP HEYGT                                  VV+ EGVETAP+D+RFPFTNQTRHCY RYLEYH CVQKKG+HA
Subjt:  RPRDISKVARGEQAPRPVHEYGT----------------------------------VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHA

Query:  PECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI
        PEC KFA YYRSLCP EW+EKWNEQRELG+FPGPI
Subjt:  PECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI

A0A6J1F3D0 cytochrome c oxidase subunit 6b-3-like6.3e-4970.92Show/hide
Query:  MSAPQRPRDISKVARGEQAPRPVHEYGT-----------------------------------VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQ
        MSAPQRPRDISKVARGEQAPRPVHEYGT                                   VVV EGVETAPNDMRFPFTNQTRHCYTRYLEYHS +Q
Subjt:  MSAPQRPRDISKVARGEQAPRPVHEYGT-----------------------------------VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQ

Query:  KKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI
        KKG+HAPEC+KFAKYYRSLCP EWIEKWNEQRELGIFPGPI
Subjt:  KKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI

A0A6J1IE20 cytochrome c oxidase subunit 6b-3-like1.1e-4869.72Show/hide
Query:  MSAPQRPRDISKVARGEQAPRPVHEYGT------------------------------------VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCV
        MSAPQRPRDISKVARGEQAPRPVHEYGT                                    VVV EGVETAPNDMRFPFTNQTRHCYTRYLEYHSC+
Subjt:  MSAPQRPRDISKVARGEQAPRPVHEYGT------------------------------------VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCV

Query:  QKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI
        QKKG+H PEC+KFAKYYRSLCPA+WIEKWNEQRELGIFPG I
Subjt:  QKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI

SwissProt top hitse value%identityAlignment
O94581 Cytochrome c oxidase subunit 12, mitochondrial9.4e-1853.03Show/hide
Query:  DMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI
        D RFP TNQT+HC+  Y++Y  C++ KG+    C +F   Y+SLCP EW+E+W+EQRE G FP PI
Subjt:  DMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI

Q945L0 Cytochrome c oxidase subunit 6b-26.5e-2763.89Show/hide
Query:  VETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI
        ++TAP D RFP TNQTRHC+TRY+E+H C   KG+ + +C +FAKYYR+LCP EW++KWNEQRE G FPGP+
Subjt:  VETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI

Q9LPJ2 Putative cytochrome c oxidase subunit 6b-like1.3e-1947.52Show/hide
Query:  RPRDISKVARGEQAPRPVHEYGTVVV-------------GEGVET-APNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIE
        R RDISKVARG+QAPRP H  GTV                 G ET A  + RFP TN+TRHC+ R+++YH C++K G+ A +CN    Y RS+CP E + 
Subjt:  RPRDISKVARGEQAPRPVHEYGTVVV-------------GEGVET-APNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIE

Query:  K
        K
Subjt:  K

Q9S7L9 Cytochrome c oxidase subunit 6b-11.4e-2972.22Show/hide
Query:  VETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI
        +ETAP D RFP TNQTRHC+TRY+EYH CV  KG  APEC+KFAK+YRSLCP+EW+++WNEQRE G FPGP+
Subjt:  VETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI

Q9SUD3 Cytochrome c oxidase subunit 6b-31.3e-2766.67Show/hide
Query:  VETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI
        ++TAP D RFP TNQTRHC+TRY+E+H C   KG+ A EC +FAKYYR+LCP EW++KWNEQRE G FPGP+
Subjt:  VETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI

Arabidopsis top hitse value%identityAlignment
AT1G22450.1 cytochrome C oxidase 6B9.9e-3172.22Show/hide
Query:  VETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI
        +ETAP D RFP TNQTRHC+TRY+EYH CV  KG  APEC+KFAK+YRSLCP+EW+++WNEQRE G FPGP+
Subjt:  VETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI

AT1G32710.1 Cytochrome c oxidase, subunit Vib family protein9.3e-2147.52Show/hide
Query:  RPRDISKVARGEQAPRPVHEYGTVVV-------------GEGVET-APNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIE
        R RDISKVARG+QAPRP H  GTV                 G ET A  + RFP TN+TRHC+ R+++YH C++K G+ A +CN    Y RS+CP E + 
Subjt:  RPRDISKVARGEQAPRPVHEYGTVVV-------------GEGVET-APNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIE

Query:  K
        K
Subjt:  K

AT4G28060.1 Cytochrome c oxidase, subunit Vib family protein9.3e-2966.67Show/hide
Query:  VETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI
        ++TAP D RFP TNQTRHC+TRY+E+H C   KG+ A EC +FAKYYR+LCP EW++KWNEQRE G FPGP+
Subjt:  VETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI

AT5G57815.1 Cytochrome c oxidase, subunit Vib family protein4.6e-2863.89Show/hide
Query:  VETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI
        ++TAP D RFP TNQTRHC+TRY+E+H C   KG+ + +C +FAKYYR+LCP EW++KWNEQRE G FPGP+
Subjt:  VETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGCGCCTCAGCGACCCAGAGACATCAGCAAGGTGGCTCGCGGCGAGCAAGCCCCAAGGCCTGTTCACGAATACGGCACCGTGGTGGTGGGAGAGGGAGTAGAGAC
AGCACCAAATGACATGCGGTTTCCTTTCACCAACCAAACACGGCACTGTTATACACGCTATTTGGAATACCATAGCTGCGTACAGAAGAAGGGGAAACACGCGCCTGAAT
GCAACAAGTTCGCCAAATATTACCGTTCTCTATGCCCCGCAGAATGGATTGAGAAATGGAACGAGCAAAGGGAGCTTGGCATCTTCCCTGGTCCGATATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGCGCCTCAGCGACCCAGAGACATCAGCAAGGTGGCTCGCGGCGAGCAAGCCCCAAGGCCTGTTCACGAATACGGCACCGTGGTGGTGGGAGAGGGAGTAGAGAC
AGCACCAAATGACATGCGGTTTCCTTTCACCAACCAAACACGGCACTGTTATACACGCTATTTGGAATACCATAGCTGCGTACAGAAGAAGGGGAAACACGCGCCTGAAT
GCAACAAGTTCGCCAAATATTACCGTTCTCTATGCCCCGCAGAATGGATTGAGAAATGGAACGAGCAAAGGGAGCTTGGCATCTTCCCTGGTCCGATATAA
Protein sequenceShow/hide protein sequence
MSAPQRPRDISKVARGEQAPRPVHEYGTVVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI