CuGenDBv2

Gene ID	Carg23690
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	syndetin
Genome location	Carg_Chr13:2351789..2354418
RNA-Seq Expression	Carg23690
Synteny	Carg23690
Gene Ontology terms	GO:0032456 - endocytic recycling (biological process) GO:0042147 - retrograde transport, endosome to Golgi (biological process) GO:0005829 - cytosol (cellular component) GO:1990745 - EARP complex (cellular component)
InterPro domains	IPR019514 - Syndetin, C-terminal IPR040047 - Syndetin

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7019304.1 Syndetin, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.9e-72

100

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Query:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV
        YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV
Subjt:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV

Query:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
Subjt:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

XP_022964722.1 syndetin-like isoform X1 [Cucurbita moschata]

4.9e-72

100

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Query:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV
        YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV
Subjt:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV

Query:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
Subjt:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

XP_022964723.1 syndetin-like isoform X2 [Cucurbita moschata]

4.9e-72

100

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Query:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV
        YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV
Subjt:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV

Query:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
Subjt:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

XP_023519395.1 syndetin-like isoform X1 [Cucurbita pepo subsp. pepo]

6.5e-72

99.29

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Query:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV
        YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISR+KRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV
Subjt:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV

Query:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
Subjt:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

XP_023519396.1 syndetin-like isoform X2 [Cucurbita pepo subsp. pepo]

6.5e-72

99.29

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Query:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV
        YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISR+KRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV
Subjt:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV

Query:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
Subjt:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CG39 syndetin

1.3e-70

96.43

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Query:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV
        YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVS NVKPKLQMV+TFIKAYYLPETEYV
Subjt:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV

Query:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        HWAR+HPEYSKSQ+IGLVN+VASMKGWKRKTRLEILEKIE
Subjt:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

A0A6J1HII5 syndetin-like isoform X1

2.4e-72

100

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Query:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV
        YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV
Subjt:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV

Query:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
Subjt:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

A0A6J1HP30 syndetin-like isoform X2

2.4e-72

100

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Query:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV
        YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV
Subjt:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV

Query:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
Subjt:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

A0A6J1I2F9 syndetin-like isoform X2

3.5e-71

98.57

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Query:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV
        YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVS NVKPKLQMVETFIKAYYLPETEYV
Subjt:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV

Query:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        HW RAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
Subjt:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

A0A6J1I532 syndetin-like isoform X1

3.5e-71

98.57

Show/hide

Query:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV
        YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVS NVKPKLQMVETFIKAYYLPETEYV
Subjt:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV

Query:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        HW RAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
Subjt:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

SwissProt top hits

e value

%identity

Alignment

F1LSG8 Syndetin

1.9e-18

36.81

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Query:  YVDLLLGEFKHYKTRLAHSGVRKE----VQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPE
        YVD LL EF+ +  RL     R      V ++L E+ + +   T++EG + +K+CS+EGRALM LD Q  +  L+        P  + VE +IKAYYL E
Subjt:  YVDLLLGEFKHYKTRLAHSGVRKE----VQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPE

Query:  TEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
         +   W + H EYS  Q+  LVN V       +K R ++L  I+
Subjt:  TEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

Q5ZKV9 Syndetin

1.1e-18

37.5

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Query:  YVDLLLGEFKHYKTRLAHSGVRKE----VQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPE
        YVD LL EF+ +  RL     R      V ++L E+ + +   TL+EG + +K+CS+EGRALM LD Q  +  L+        P  + VET+IKAYYL E
Subjt:  YVDLLLGEFKHYKTRLAHSGVRKE----VQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPE

Query:  TEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
         +   W + H EYS   +  LVN V       +K R ++L  I+
Subjt:  TEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

Q8CI71 Syndetin

3.9e-19

37.5

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Query:  YVDLLLGEFKHYKTRLAHSGVRKE----VQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPE
        YVD LL EF+ +  RL     R      V ++L E+ + +   T++EG + +K+CS+EGRALM LD Q  +  L+        P  + VET+IKAYYL E
Subjt:  YVDLLLGEFKHYKTRLAHSGVRKE----VQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPE

Query:  TEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
         +   W + H EYS  Q+  LVN V       +K R ++L  I+
Subjt:  TEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

Q96JG6 Syndetin

3.9e-19

37.5

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Query:  YVDLLLGEFKHYKTRLAHSGVRKE----VQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPE
        YVD LL EF+ +  RL     R      V ++L E+ + +   T++EG + +K+CS+EGRALM LD Q  +  L+        P  + VET+IKAYYL E
Subjt:  YVDLLLGEFKHYKTRLAHSGVRKE----VQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPE

Query:  TEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
         +   W + H EYS  Q+  LVN V       +K R ++L  I+
Subjt:  TEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

Arabidopsis top hits

e value

%identity

Alignment

AT2G27900.1 CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 316 Blast hits to 252 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).

3.3e-66

82.86

Show/hide

Query:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV
        YVDL+LGEFKHYKTRLAH G+ +EVQ+LLLEYG++I AE L+EG+SRIKRC+DEGR LMSLDLQVLINGLQHFV   VKPKLQ+VETFIKAYYLPETEYV
Subjt:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV

Query:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        HWARAHPEY+K+QV+GLVNLVA+MKGWKRKTRLE++EKIE
Subjt:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

AT2G27900.2 CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

3.3e-66

82.86

Show/hide

Query:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV
        YVDL+LGEFKHYKTRLAH G+ +EVQ+LLLEYG++I AE L+EG+SRIKRC+DEGR LMSLDLQVLINGLQHFV   VKPKLQ+VETFIKAYYLPETEYV
Subjt:  YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYV

Query:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        HWARAHPEY+K+QV+GLVNLVA+MKGWKRKTRLE++EKIE
Subjt:  HWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

Sequences

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CDS sequence

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TACGTCGACTTGTTATTGGGAGAATTCAAGCATTATAAAACAAGGCTGGCTCATAGCGGAGTTCGTAAGGAGGTTCAAGACCTCCTCTTGGAGTATGGTCTGGATATTGT
TGCAGAGACACTTATTGAAGGTATATCACGAATAAAGCGATGTTCCGATGAAGGACGTGCTCTCATGTCATTGGATCTTCAGGTTTTAATCAATGGCTTGCAACATTTTG
TTTCTGAGAATGTGAAGCCTAAGTTACAAATGGTTGAGACTTTCATTAAGGCGTACTACCTTCCAGAAACCGAATATGTACACTGGGCACGAGCTCACCCGGAATACAGT
AAGAGCCAAGTTATTGGTTTGGTTAACCTCGTTGCATCAATGAAAGGGTGGAAGAGAAAAACCCGGTTGGAAATACTGGAAAAGATCGAGTGA

mRNA sequence

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Protein sequence

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YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYS
KSQVIGLVNLVASMKGWKRKTRLEILEKIE

Carg23690 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome