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Carg23722 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23722
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDynein light chain
Genome locationCarg_Chr15:6009018..6011339
RNA-Seq ExpressionCarg23722
SyntenyCarg23722
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150121.1 dynein light chain 1, cytoplasmic [Cucumis sativus]1.6e-6495.52Show/hide
Query:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
        M+GAEMELERR+KFLNGLILKKKAGE QE RDRLNVRVRASDM FPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
Subjt:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
        HSLGGFLYFSIDKVYILLFKTAVEPLSRG SLKD
Subjt:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD

XP_022939677.1 dynein light chain LC6, flagellar outer arm [Cucurbita moschata]8.3e-69100Show/hide
Query:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
        MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
Subjt:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
        HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
Subjt:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD

XP_022973572.1 dynein light chain LC6, flagellar outer arm [Cucurbita maxima]9.2e-6897.76Show/hide
Query:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
        MEGAEMELERR+KFLNGLILKKKAGEHQEHRDRLN+RVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLAL LKKEFDSSYGPAWHCIVGTSFGSYVT
Subjt:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
        HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
Subjt:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD

XP_023551552.1 dynein light chain LC6, flagellar outer arm [Cucurbita pepo subsp. pepo]2.4e-6899.25Show/hide
Query:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
        MEGAEMELERR+KFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
Subjt:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
        HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
Subjt:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD

XP_038906759.1 dynein light chain LC6, flagellar outer arm [Benincasa hispida]7.3e-6595.52Show/hide
Query:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
        M+GAEMELERR+KFL+GLILKKKAGE QE RDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
Subjt:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
        HSLGGFLYFSIDKVYILLFKTAVEPLSRG SLKD
Subjt:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD

TrEMBL top hitse value%identityAlignment
A0A0A0KPF8 Dynein light chain7.9e-6595.52Show/hide
Query:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
        M+GAEMELERR+KFLNGLILKKKAGE QE RDRLNVRVRASDM FPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
Subjt:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
        HSLGGFLYFSIDKVYILLFKTAVEPLSRG SLKD
Subjt:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD

A0A1S3CSY6 Dynein light chain7.9e-6595.52Show/hide
Query:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
        M+GAEMELERR+KFLNGLILKKKAGE QE RDRLNVRVRASDM FPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
Subjt:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
        HSLGGFLYFSIDKVYILLFKTAVEPLSRG SLKD
Subjt:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD

A0A6J1CWZ8 Dynein light chain8.7e-6494.03Show/hide
Query:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
        MEGAEMELERR+KFLNGLI KKKA E QE RDRLN+RVRASDMPFPLQNRAFSCARELLDSMPGKLDSKR ALALKKEFDSSYGPAWHCIVGTSFGSYVT
Subjt:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
        HSLGGFLYFSIDKVYILLFKTAVEPLSRG SLKD
Subjt:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD

A0A6J1FHG9 Dynein light chain4.0e-69100Show/hide
Query:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
        MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
Subjt:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
        HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
Subjt:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD

A0A6J1I7W2 Dynein light chain4.5e-6897.76Show/hide
Query:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
        MEGAEMELERR+KFLNGLILKKKAGEHQEHRDRLN+RVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLAL LKKEFDSSYGPAWHCIVGTSFGSYVT
Subjt:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
        HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
Subjt:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD

SwissProt top hitse value%identityAlignment
O02414 Dynein light chain LC6, flagellar outer arm1.2e-1445.24Show/hide
Query:  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT
        ++ +DMP  +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGSYVTH    F+YF + +V +LLFK+
Subjt:  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT

O96860 Dynein light chain 2, cytoplasmic1.0e-1345.24Show/hide
Query:  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT
        ++ +DM   +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGSYVTH    F+YF + +V ILLFK+
Subjt:  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT

Q22799 Dynein light chain 1, cytoplasmic8.0e-1445.24Show/hide
Query:  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT
        ++ +DM   +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGSYVTH    F+YF + +V ILLFK+
Subjt:  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT

Q24117 Dynein light chain 1, cytoplasmic1.0e-1345.24Show/hide
Query:  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT
        ++ +DM   +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGSYVTH    F+YF + +V ILLFK+
Subjt:  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT

Q86A88 Dynein light chain, cytoplasmic4.7e-1444.71Show/hide
Query:  VRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
        + V+ +DMP  +Q  A  C  +  +    + D   +A+ +KKEFD  Y P WHCIVG SFGS+VTH    F+YF+I+K  +LLFK
Subjt:  VRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK

Arabidopsis top hitse value%identityAlignment
AT1G23220.1 Dynein light chain type 1 family protein8.9e-5376.56Show/hide
Query:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
        MEG E+ELERR+KFLN LI KKKA E Q+ +D  NVRVRASDMP P QNRAFS +RE+L++ PGK D+KRLA ALKK+FDS+YGPAWHCIVGTSFGSYVT
Subjt:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYILLFKTAVEPLSR
        HS GGFLYF IDKVY+LLFKTAVEPL +
Subjt:  HSLGGFLYFSIDKVYILLFKTAVEPLSR

AT1G52240.2 RHO guanyl-nucleotide exchange factor 117.4e-1543.18Show/hide
Query:  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEP
        V  SDMP  +Q +A + A + LD +    D K +A  +KKEFD  YG  W C+VG++FG + THS G F+YF ++ +  L+FK A  P
Subjt:  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEP

AT3G16120.1 Dynein light chain type 1 family protein4.8e-1443.02Show/hide
Query:  RVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTA
        +V  +DMP  +Q +A   A + LD +    DS  +A  +KKEFD  YG  W C+VGT+FG + THS G F+YF +  +  L+FK A
Subjt:  RVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTA

AT4G27360.1 Dynein light chain type 1 family protein1.8e-1345.78Show/hide
Query:  SDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAV
        +DM   ++  A S A + LD      +  ++A  +KKEFD SYG  W CIVGT FGS+VTH  G F++FS+  + ILLFK +V
Subjt:  SDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAV

AT5G20110.1 Dynein light chain type 1 family protein1.2e-2862.5Show/hide
Query:  DRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLS
        + L VR+ A+DMP  +Q  AF CAR  LDS+  K  SK +A  LKKEFD  YGPAWHCIVG+SFGS+VTHS G F+YFS+DK+Y+LLFKT V P S
Subjt:  DRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGAGCGGAAATGGAGCTTGAGCGACGCACCAAGTTTCTAAATGGGCTTATTTTGAAGAAGAAGGCGGGGGAGCATCAAGAGCACCGCGATCGTCTCAATGTTCG
CGTTAGAGCCTCCGATATGCCGTTTCCTCTCCAGAATCGCGCTTTTAGTTGCGCTCGTGAACTTCTTGATTCCATGCCTGGGAAGCTCGATAGCAAACGCCTCGCTCTTG
CCCTCAAAAAGGAATTTGATTCGTCCTATGGTCCAGCATGGCATTGCATCGTGGGAACTAGCTTTGGGTCGTATGTAACACATTCTCTGGGTGGGTTCTTGTATTTTTCA
ATCGACAAAGTTTACATCCTTCTCTTCAAAACGGCAGTGGAGCCTCTGTCTCGTGGGAAGTCGTTGAAAGATTGA
mRNA sequenceShow/hide mRNA sequence
TGCCTTCGGCTTCCTCCTGGCGCCACTGTTTCTCCTTTTCTTCCCCTTCCCCTTGTCCTCTTCCTTCTTCCGCCAGACATTTTGTCTTTCACCAATGCCGTCCTTGATCG
CTTTTTAATTCGAAGAACAAGAAGAACAAGGTGGGGTTCGGTCTTTTTCCCCATTTTGATGAGATTGTAGTGTTGGTGGGTCATGGAGGGAGCGGAAATGGAGCTTGAGC
GACGCACCAAGTTTCTAAATGGGCTTATTTTGAAGAAGAAGGCGGGGGAGCATCAAGAGCACCGCGATCGTCTCAATGTTCGCGTTAGAGCCTCCGATATGCCGTTTCCT
CTCCAGAATCGCGCTTTTAGTTGCGCTCGTGAACTTCTTGATTCCATGCCTGGGAAGCTCGATAGCAAACGCCTCGCTCTTGCCCTCAAAAAGGAATTTGATTCGTCCTA
TGGTCCAGCATGGCATTGCATCGTGGGAACTAGCTTTGGGTCGTATGTAACACATTCTCTGGGTGGGTTCTTGTATTTTTCAATCGACAAAGTTTACATCCTTCTCTTCA
AAACGGCAGTGGAGCCTCTGTCTCGTGGGAAGTCGTTGAAAGATTGAGTTTCTGAATTCTGAACGAGGATCGAACAGCAAGAACAACCAGCTTCAATCTCATTATTCTTT
TTGGGTTGTATCATTTGGGTTTACCTTGTTTAAGAAACAGATTGTGCAGGTTCTTGTTTGATGTGAGTTGTGCATCAATTTTACTCGTTGGTTATGAAATTTTGTTGTGT
GCAGGATTTGTGATGTTACCATGTTAACCTTCAAATGAAAATTAAGACATGAACGCTATATTAGGGTGGCCTAAAAGATTGCGACTCTGTTCCTCACCAATCACCCAAGA
ATTAGACGGATATAGACTACTCAAGTCAAATCATAAAAGGTTAACTGAGGTTACAATCCAACTCTACCAAAATTATTATAAAAATTAAGAGTATTTGATATTGTAATTAA
AAATTAGT
Protein sequenceShow/hide protein sequence
MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFS
IDKVYILLFKTAVEPLSRGKSLKD