CuGenDBv2

Gene ID	Carg23781
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L35-like
Genome location	Carg_Chr04:1239531..1241332
RNA-Seq Expression	Carg23781
Synteny	Carg23781
Gene Ontology terms	GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0006412 - translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001854 - Ribosomal protein L29/L35 IPR036049 - Ribosomal protein L29/L35 superfamily IPR045059 - 60S ribosomal protein L35

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6602348.1 Dirigent protein 25, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-52

98.37

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Query:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQKSKADLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLLTERQKKKEMYYPLRKYAIKV
        SL+TERQKKKEMYYPLRKYAIKV
Subjt:  SLLTERQKKKEMYYPLRKYAIKV

XP_022134532.1 60S ribosomal protein L35 [Momordica charantia]

3.8e-52

98.37

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Query:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLLTERQKKKEMYYPLRKYAIKV
        SL TERQKKKEMY+PLRKYAIKV
Subjt:  SLLTERQKKKEMYYPLRKYAIKV

XP_022923169.1 60S ribosomal protein L35-like [Cucurbita moschata]

1.3e-52

98.37

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Query:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQKSKADLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLLTERQKKKEMYYPLRKYAIKV
        SL+TERQKKKEMYYPLRKYAIKV
Subjt:  SLLTERQKKKEMYYPLRKYAIKV

XP_022941613.1 60S ribosomal protein L35-like [Cucurbita moschata]

2.6e-53

100

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Query:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLLTERQKKKEMYYPLRKYAIKV
        SLLTERQKKKEMYYPLRKYAIKV
Subjt:  SLLTERQKKKEMYYPLRKYAIKV

XP_022992073.1 60S ribosomal protein L35-like [Cucurbita maxima]

2.9e-52

98.37

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Query:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQKSKADLL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLLTERQKKKEMYYPLRKYAIKV
        SLLTERQKKKEMYYPLRKYAIKV
Subjt:  SLLTERQKKKEMYYPLRKYAIKV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1BZV3 60S ribosomal protein L35

1.8e-52

98.37

Show/hide

Query:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLLTERQKKKEMYYPLRKYAIKV
        SL TERQKKKEMY+PLRKYAIKV
Subjt:  SLLTERQKKKEMYYPLRKYAIKV

A0A6J1E5L3 60S ribosomal protein L35-like

6.4e-53

98.37

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Query:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQKSKADLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLLTERQKKKEMYYPLRKYAIKV
        SL+TERQKKKEMYYPLRKYAIKV
Subjt:  SLLTERQKKKEMYYPLRKYAIKV

A0A6J1FSL2 60S ribosomal protein L35-like

1.3e-53

100

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Query:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLLTERQKKKEMYYPLRKYAIKV
        SLLTERQKKKEMYYPLRKYAIKV
Subjt:  SLLTERQKKKEMYYPLRKYAIKV

A0A6J1JTF2 60S ribosomal protein L35-like

2.4e-52

97.56

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Query:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR KSKADLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLLTERQKKKEMYYPLRKYAIKV
        SL+TERQKKKEMYYPLRKYAIKV
Subjt:  SLLTERQKKKEMYYPLRKYAIKV

A0A6J1JY13 60S ribosomal protein L35-like

1.4e-52

98.37

Show/hide

Query:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQKSKADLL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLLTERQKKKEMYYPLRKYAIKV
        SLLTERQKKKEMYYPLRKYAIKV
Subjt:  SLLTERQKKKEMYYPLRKYAIKV

SwissProt top hits

e value

%identity

Alignment

O80626 60S ribosomal protein L35-2

4.9e-50

90.24

Show/hide

Query:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR+KSKADL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLLTERQKKKEMYYPLRKYAIKV
        SL TER+KKKEMY+P+RKYAIKV
Subjt:  SLLTERQKKKEMYYPLRKYAIKV

Q9LZ41 60S ribosomal protein L35-4

1.8e-49

89.43

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Query:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR KSK DL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLLTERQKKKEMYYPLRKYAIKV
        SL TER+KKKEMY+P+RKYAIKV
Subjt:  SLLTERQKKKEMYYPLRKYAIKV

Q9M3D2 60S ribosomal protein L35-3

5.4e-49

88.62

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Query:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR KSK+DL TQLK+LKAELA LRVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLLTERQKKKEMYYPLRKYAIKV
        SL TER+KKK+MY+P+RKYAIKV
Subjt:  SLLTERQKKKEMYYPLRKYAIKV

Q9M5L0 60S ribosomal protein L35

7.5e-51

91.06

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Query:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQK+KA+LL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK ALREAYK KK LPLDLRPKKTRAIRRRLTKHQ 
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLLTERQKKKEMYYPLRKYAIKV
        SL TER+KKKEMY+P+RKYAIKV
Subjt:  SLLTERQKKKEMYYPLRKYAIKV

Q9SF53 60S ribosomal protein L35-1

1.1e-49

89.43

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Query:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR+KSK+DL  QLK+LKAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLLTERQKKKEMYYPLRKYAIKV
        SL TER+KKKEMY+P+RKYAIKV
Subjt:  SLLTERQKKKEMYYPLRKYAIKV

Arabidopsis top hits

e value

%identity

Alignment

AT2G39390.1 Ribosomal L29 family protein

3.4e-51

90.24

Show/hide

Query:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR+KSKADL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLLTERQKKKEMYYPLRKYAIKV
        SL TER+KKKEMY+P+RKYAIKV
Subjt:  SLLTERQKKKEMYYPLRKYAIKV

AT3G09500.1 Ribosomal L29 family protein

7.7e-51

89.43

Show/hide

Query:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR+KSK+DL  QLK+LKAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLLTERQKKKEMYYPLRKYAIKV
        SL TER+KKKEMY+P+RKYAIKV
Subjt:  SLLTERQKKKEMYYPLRKYAIKV

AT3G55170.1 Ribosomal L29 family protein

3.8e-50

88.62

Show/hide

Query:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR KSK+DL TQLK+LKAELA LRVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLLTERQKKKEMYYPLRKYAIKV
        SL TER+KKK+MY+P+RKYAIKV
Subjt:  SLLTERQKKKEMYYPLRKYAIKV

AT3G55170.2 Ribosomal L29 family protein

3.8e-50

88.62

Show/hide

Query:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR KSK+DL TQLK+LKAELA LRVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLLTERQKKKEMYYPLRKYAIKV
        SL TER+KKK+MY+P+RKYAIKV
Subjt:  SLLTERQKKKEMYYPLRKYAIKV

AT5G02610.1 Ribosomal L29 family protein

1.3e-50

89.43

Show/hide

Query:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR KSK DL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLLTERQKKKEMYYPLRKYAIKV
        SL TER+KKKEMY+P+RKYAIKV
Subjt:  SLLTERQKKKEMYYPLRKYAIKV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGAGAATTAAGGTTCACGAGCTTAGACAGAAGTCGAAGGCGGATCTTCTGACCCAGCTTAAAGACCTTAAGGCGGAGCTTGCTCTTCTCCGTGTTGCTAAGGTCAC
TGGTGGTGCTCCCAACAAGCTCTCCAAAATTAAGGTGGTGAGGCTGTCAATTGCTCAGGTGTTGACCGTGATTTCTCAGAAACAGAAAGCTGCTCTTAGGGAAGCTTACA
AGAAGAAGAAGCTTTTGCCTCTTGATTTGCGTCCCAAGAAGACCAGGGCCATTCGCCGAAGGCTCACCAAGCACCAAGCATCTCTATTGACCGAGCGACAGAAGAAGAAA
GAGATGTACTACCCATTGAGGAAATACGCCATTAAGGTGTAG

mRNA sequence

Show/hide mRNA sequence

TGTGCACGCTGCAGGCCTCCGCCGTATCCCAAACACACAACAGCCGGTCTCTGCTTGCTAGATTCTAATGGCGAGAATTAAGGTTCACGAGCTTAGACAGAAGTCGAAGG
CGGATCTTCTGACCCAGCTTAAAGACCTTAAGGCGGAGCTTGCTCTTCTCCGTGTTGCTAAGGTCACTGGTGGTGCTCCCAACAAGCTCTCCAAAATTAAGGTGGTGAGG
CTGTCAATTGCTCAGGTGTTGACCGTGATTTCTCAGAAACAGAAAGCTGCTCTTAGGGAAGCTTACAAGAAGAAGAAGCTTTTGCCTCTTGATTTGCGTCCCAAGAAGAC
CAGGGCCATTCGCCGAAGGCTCACCAAGCACCAAGCATCTCTATTGACCGAGCGACAGAAGAAGAAAGAGATGTACTACCCATTGAGGAAATACGCCATTAAGGTGTAGG
CTTAGAGCAAATTGATTGATCATCCTTGGTATGATGCCATCTTCTACTCATTTTGGCTTTTGATTTATCGATAATGTTATTCGGACTTGAGTTTGTCTATTTTCAATCTC
ATTTTGTTAGATCTGTGAGAACTTTGAAGTATTTCCTTTTCCATGTAGTAATACTTTAGCGTTTCCCAAGTTTATAATGAAAAATGGTTTTGGTTAGTGGAATTTGATCT
GAGCTTCAAACCCATCCGTAATTATGCAGTGTAGTTAAATGTTTCTCTTTAATATGGCTGAAATTTGGTAGAACATAAACATGGGGGTTGGAGTTAATAATCAAATGGTT
CAAGCTATAGTTCTGTGTAACTAAATGTAGAAGGCTCGTGTCAGGTGGTTGTCTCGTGTCGTTTGACACTATTTATGATTAATTATTGACCCATCTCTATGAATATTTTG
CCATCCCTGACTTTAAGAGGCGTGATTGTAATAAACTTCATAATTCAAATGGTCTGGCATGGCCATGTGCGACGTTACCAAATTCCATGTCGACGAAGTGTGATAGTCAC
AATTATGATGTAAGGAAATAAAAATAAATGGTTACAACGAAGCTACAAGGACATAAAATTTTAATTCATAAAGGAAAGCACAAGCTAAATTTT

Protein sequence

Show/hide protein sequence

MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKK
EMYYPLRKYAIKV

Carg23781 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome