CuGenDBv2

Gene ID	Carg23842
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ubiquitinyl hydrolase 1
Genome location	Carg_Chr02:4249967..4250920
RNA-Seq Expression	Carg23842
Synteny	Carg23842
Gene Ontology terms	GO:0016579 - protein deubiquitination (biological process) GO:0004843 - thiol-dependent ubiquitin-specific protease activity (molecular function)
InterPro domains	IPR006155 - Josephin domain IPR040053 - Josephin-1/2

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605424.1 Josephin-like protein, partial [Cucurbita argyrosperma subsp. sororia]

3.0e-63

99.15

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Query:  KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQSIWMGLRLLIRLWFDGIWNSRHWDTPGKINELWYNLDSDLLDPH
        +ENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQSIWMGLRLLIRLWFDGIWNSRHWDTPGKINELWYNLDSDLLDPH
Subjt:  KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQSIWMGLRLLIRLWFDGIWNSRHWDTPGKINELWYNLDSDLLDPH

Query:  PFKDIDEVRQFLDHVIG
        PFKDIDEVRQFLDHVIG
Subjt:  PFKDIDEVRQFLDHVIG

KAG7035373.1 Josephin-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.6e-72

100

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Query:  MAKENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQSIWMGLRLLIRLWFDGIWNSRHWDTPGKINELWYNLDSDLLD
        MAKENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQSIWMGLRLLIRLWFDGIWNSRHWDTPGKINELWYNLDSDLLD
Subjt:  MAKENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQSIWMGLRLLIRLWFDGIWNSRHWDTPGKINELWYNLDSDLLD

Query:  PHPFKDIDEVRQFLDHVIGDNGEILFVINDRN
        PHPFKDIDEVRQFLDHVIGDNGEILFVINDRN
Subjt:  PHPFKDIDEVRQFLDHVIGDNGEILFVINDRN

XP_022947023.1 josephin-like protein [Cucurbita moschata]

8.2e-69

96.15

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Query:  KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQSIWMGLRLLIRLWFDGIWNSRHWDTPGKINELWYNLDSDLLDPH
        +ENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFK HHNTVTGNYDITIEIELLQSIWMGLRLL++LWFDGIWNSRHWDTPGKINELWYNLDSDLL PH
Subjt:  KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQSIWMGLRLLIRLWFDGIWNSRHWDTPGKINELWYNLDSDLLDPH

Query:  PFKDIDEVRQFLDHVIGDNGEILFVINDRN
        PFKDIDEVRQFLDHVIGDNGEILFVINDRN
Subjt:  PFKDIDEVRQFLDHVIGDNGEILFVINDRN

XP_023532315.1 josephin-like protein [Cucurbita pepo subsp. pepo]

6.1e-64

92.31

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Query:  KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQSIWMGLRLLIRLWFDGIWNSRHWDTPGKINELWYNLDSDLLDPH
        +ENDAFTRANLNATAEKLV EEPNKEPWTPLSFVFK +H TVTGNYDITIEIELLQSIWMGLRLLI LWFDGIWNSRHWD PGKINELWYNLDSDLL  H
Subjt:  KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQSIWMGLRLLIRLWFDGIWNSRHWDTPGKINELWYNLDSDLLDPH

Query:  PFKDIDEVRQFLDHVIGDNGEILFVINDRN
        PFKDIDEVRQFLDHVIGDNGEILFVINDR+
Subjt:  PFKDIDEVRQFLDHVIGDNGEILFVINDRN

XP_038902688.1 josephin-like protein [Benincasa hispida]

1.1e-41

59.87

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Query:  KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQS-----IW---------------------MGLRLLIRL-WFDGI
        +E DAFTRANLNA AEKLVL+EPN+E WTPLSFVFK HHNTVTGNYDI + I  L+      +W                     MG+ L + +  F GI
Subjt:  KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQS-----IW---------------------MGLRLLIRL-WFDGI

Query:  WNSRHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLDHVIGDNGEILFVINDRN
        W SRHW    KIN LWYNLDSDL  PHPFKD DEVRQFLDHVIG+NGEIL ++NDRN
Subjt:  WNSRHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLDHVIGDNGEILFVINDRN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KBN9 Ubiquitinyl hydrolase 1

6.6e-40

57.96

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Query:  KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQS-----IW---------------------MGLRLLIRL-WFDGI
        +E DAFTRANLNA AEKLV + PN+E WTPLS VFK HHNTVTGNYDI + I  L+      +W                     MG+ L + +  F GI
Subjt:  KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQS-----IW---------------------MGLRLLIRL-WFDGI

Query:  WNSRHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLDHVIGDNGEILFVINDRN
        W SRHW    KI+ LWYNLDSDL DPHPFKD DE+RQFLDHVI DNGEIL V+NDRN
Subjt:  WNSRHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLDHVIGDNGEILFVINDRN

A0A1S4E4I3 Ubiquitinyl hydrolase 1

2.5e-39

57.32

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Query:  KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQS-----IW---------------------MGLRLLIRL-WFDGI
        +E DAFTRANLNA AEKLV +EPN+E WTPLS VFK HHNTVTGNYDI + I  L+      +W                     MG+ L + +  F GI
Subjt:  KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQS-----IW---------------------MGLRLLIRL-WFDGI

Query:  WNSRHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLDHVIGDNGEILFVINDRN
        W SRHW    KI+ LWYNLDSDL  PHPFKD +EVR+FLDHVI DNGEIL V+NDRN
Subjt:  WNSRHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLDHVIGDNGEILFVINDRN

A0A6J1FYW5 Ubiquitinyl hydrolase 1

1.3e-40

57.96

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Query:  KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQS-----IW---------------------MGLRLLIRL-WFDGI
        +ENDAFTRA+LNA +EKLVL+EPN+EPWTPLSFVFK HHN+VTGNYDI + I  ++      +W                     MG+ L + +  F GI
Subjt:  KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQS-----IW---------------------MGLRLLIRL-WFDGI

Query:  WNSRHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLDHVIGDNGEILFVINDRN
        W SRHW    KINE WYNLDSDL  PH FKD DEVRQFLD+VI DNGEIL V+NDRN
Subjt:  WNSRHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLDHVIGDNGEILFVINDRN

A0A6J1G5H0 Ubiquitinyl hydrolase 1

4.0e-69

96.15

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Query:  KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQSIWMGLRLLIRLWFDGIWNSRHWDTPGKINELWYNLDSDLLDPH
        +ENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFK HHNTVTGNYDITIEIELLQSIWMGLRLL++LWFDGIWNSRHWDTPGKINELWYNLDSDLL PH
Subjt:  KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQSIWMGLRLLIRLWFDGIWNSRHWDTPGKINELWYNLDSDLLDPH

Query:  PFKDIDEVRQFLDHVIGDNGEILFVINDRN
        PFKDIDEVRQFLDHVIGDNGEILFVINDRN
Subjt:  PFKDIDEVRQFLDHVIGDNGEILFVINDRN

A0A6J1JI12 Ubiquitinyl hydrolase 1

1.2e-41

59.87

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Query:  KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQS-----IW---------------------MGLRLLIRL-WFDGI
        +EN+AFTRA+LNA AEKLVL+EPNKEPWTPLSFVFK HHN+VTGNYDI + I  L+      +W                     MG+ L + +  F GI
Subjt:  KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQS-----IW---------------------MGLRLLIRL-WFDGI

Query:  WNSRHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLDHVIGDNGEILFVINDRN
        W SRHW    KINELWYNLDSDL  PH FKD DEVRQFLD+VI DNGEIL V+NDRN
Subjt:  WNSRHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLDHVIGDNGEILFVINDRN

SwissProt top hits

e value

%identity

Alignment

O82391 Josephin-like protein

9.6e-28

46.72

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Query:  KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQS-----IW------------------MGLRLLIRL-WFDGIWNS
        ++ DAFT+ +LN+ AEKL   +PNKE WTPLSFV K HHNT+TGNYD+ + I  L+      +W                  MG+ L + +  + G+W S
Subjt:  KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQS-----IW------------------MGLRLLIRL-WFDGIWNS

Query:  RHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLD
        RHW    KIN +WYNLDSDL+ P  F+D DEVR FLD
Subjt:  RHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLD

Arabidopsis top hits

e value

%identity

Alignment

AT2G29640.1 JOSEPHIN-like protein

6.8e-29

46.72

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Query:  KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQS-----IW------------------MGLRLLIRL-WFDGIWNS
        ++ DAFT+ +LN+ AEKL   +PNKE WTPLSFV K HHNT+TGNYD+ + I  L+      +W                  MG+ L + +  + G+W S
Subjt:  KENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQS-----IW------------------MGLRLLIRL-WFDGIWNS

Query:  RHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLD
        RHW    KIN +WYNLDSDL+ P  F+D DEVR FLD
Subjt:  RHWDTPGKINELWYNLDSDLLDPHPFKDIDEVRQFLD

Sequences

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CDS sequence

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ATGGCGAAGGAAAATGATGCATTTACTCGAGCCAACTTAAATGCAACAGCTGAAAAACTGGTGCTCGAGGAGCCAAACAAAGAACCTTGGACACCATTATCATTTGTCTT
TAAGTCTCATCACAACACAGTAACTGGAAATTATGACATAACCATCGAAATAGAGCTTCTTCAATCGATTTGGATGGGCCTGAGGCTACTCATAAGGTTATGGTTTGATG
GCATTTGGAATAGTAGGCACTGGGATACACCGGGAAAGATAAACGAATTGTGGTATAATTTGGACAGTGATCTGCTTGATCCTCATCCGTTTAAGGATATTGATGAAGTA
AGACAATTTTTGGATCATGTGATTGGTGACAATGGGGAAATTTTGTTTGTTATAAATGACAGGAACTGA

mRNA sequence

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Protein sequence

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MAKENDAFTRANLNATAEKLVLEEPNKEPWTPLSFVFKSHHNTVTGNYDITIEIELLQSIWMGLRLLIRLWFDGIWNSRHWDTPGKINELWYNLDSDLLDPHPFKDIDEV
RQFLDHVIGDNGEILFVINDRN

Carg23842 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome