CuGenDBv2

Gene ID	Carg23844
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Thylakoid soluble phosphoprotein TSP
Genome location	Carg_Chr02:4247009..4247296
RNA-Seq Expression	Carg23844
Synteny	Carg23844
Gene Ontology terms	NA
InterPro domains	IPR021584 - Thylakoid soluble phosphoprotein TSP9 IPR037244 - Thylakoid soluble phosphoprotein TSP9 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7010512.1 hypothetical protein SDJN02_27306, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.6e-32

81.05

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Query:  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD
        MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G +E+DQLLETDPVLQKVEGK+   +N GTV GG+KNSVQVPPKKNG FGGLFAK+D
Subjt:  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD

XP_004143212.1 uncharacterized protein LOC101205268 [Cucumis sativus]

5.8e-32

81.44

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Query:  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD
        MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGK+  + NG G+VRGG+KNSVQVPPKKN G FGGLFAKKD
Subjt:  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD

XP_008464052.1 PREDICTED: uncharacterized protein LOC103502033 [Cucumis melo]

9.9e-32

82.47

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Query:  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD
        MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGK+G + NG GTVR G+KNSVQ+PPKKN GVFGGLFAKKD
Subjt:  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD

XP_022947653.1 uncharacterized protein LOC111451452 [Cucurbita moschata]

1.9e-43

100

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Query:  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD
        MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD
Subjt:  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD

XP_023532336.1 uncharacterized protein LOC111794525 [Cucurbita pepo subsp. pepo]

9.5e-43

98.95

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Query:  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD
        MASLSFAFSPAAGRVFAATAAKGAGE KKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD
Subjt:  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KC59 Uncharacterized protein

2.8e-32

81.44

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Query:  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD
        MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGK+  + NG G+VRGG+KNSVQVPPKKN G FGGLFAKKD
Subjt:  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD

A0A1S3CKK5 uncharacterized protein LOC103502033

4.8e-32

82.47

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Query:  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD
        MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGK+G + NG GTVR G+KNSVQ+PPKKN GVFGGLFAKKD
Subjt:  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD

A0A5A7V5S9 Uncharacterized protein

4.8e-32

82.47

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Query:  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD
        MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGK+G + NG GTVR G+KNSVQ+PPKKN GVFGGLFAKKD
Subjt:  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD

A0A6J1G777 uncharacterized protein LOC111451452

9.3e-44

100

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Query:  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD
        MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD
Subjt:  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD

A0A6J1L2X7 uncharacterized protein LOC111499927

9.3e-44

100

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Query:  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD
        MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD
Subjt:  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G47070.1 LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

1.4e-12

47.31

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Query:  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEK-DQLLETDPVLQKVEGKNGGANNG-GTVRGGKKNS-VQVPPKKNGVFGGL
        ++SL  +F+PA  RV+A +   G+G  K+EK  +D++LG M K DQ  ET+P+L+KV+ K G    G GTVRGGK ++   VP K  G FGGL
Subjt:  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEK-DQLLETDPVLQKVEGKNGGANNG-GTVRGGKKNS-VQVPPKKNGVFGGL

Sequences

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CDS sequence

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ATGGCCTCTCTTTCATTTGCATTCTCTCCGGCTGCCGGACGGGTGTTCGCCGCCACGGCGGCGAAGGGTGCCGGCGAAGGCAAGAAGGAAAAGGGTATTCTGGATTGGAT
CCTTGGAGGCATGGAGAAGGATCAGCTTCTGGAAACTGACCCTGTTCTTCAAAAGGTTGAGGGCAAGAATGGCGGCGCCAACAACGGCGGCACTGTCCGCGGCGGCAAGA
AGAATTCCGTCCAAGTCCCACCGAAGAAAAACGGCGTCTTCGGCGGTCTCTTTGCCAAGAAAGACTAA

mRNA sequence

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Protein sequence

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MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD

Carg23844 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome