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Carg23850 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23850
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionvillin-1
Genome locationCarg_Chr02:4217097..4217714
RNA-Seq ExpressionCarg23850
SyntenyCarg23850
Gene Ontology termsGO:0051014 - actin filament severing (biological process)
GO:0051693 - actin filament capping (biological process)
GO:0072488 - ammonium transmembrane transport (biological process)
GO:0015629 - actin cytoskeleton (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0008519 - ammonium transmembrane transporter activity (molecular function)
GO:0051015 - actin filament binding (molecular function)
InterPro domainsIPR007122 - Villin/Gelsolin
IPR029006 - ADF-H/Gelsolin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605416.1 Villin-1, partial [Cucurbita argyrosperma subsp. sororia]8.7e-2296.3Show/hide
Query:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS
        MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLN +
Subjt:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS

KAG7035365.1 Villin-4 [Cucurbita argyrosperma subsp. argyrosperma]3.9e-30100Show/hide
Query:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVSFARFAFVTLFIQNV
        MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVSFARFAFVTLFIQNV
Subjt:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVSFARFAFVTLFIQNV

XP_022948224.1 villin-1 isoform X2 [Cucurbita moschata]8.7e-2296.3Show/hide
Query:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS
        MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLN +
Subjt:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS

XP_023006794.1 villin-1 [Cucurbita maxima]8.7e-2296.3Show/hide
Query:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS
        MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLN +
Subjt:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS

XP_023532150.1 villin-1 [Cucurbita pepo subsp. pepo]8.7e-2296.3Show/hide
Query:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS
        MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLN +
Subjt:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS

TrEMBL top hitse value%identityAlignment
A0A5D3CZ09 Villin-14.8e-1883.33Show/hide
Query:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS
        MSLFFKDADPVFQGAG   GLEIWCIE+L+VV VPK+SHGKFYSGSAYIVLN +
Subjt:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS

A0A6J1D3W7 villin-13.0e-2092.59Show/hide
Query:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS
        MSLFFKDADPVFQGAGT AGLEIWCIESLRVV VPKSSHGKFYSGSAYIVLN +
Subjt:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS

A0A6J1G8S8 villin-1 isoform X14.2e-2296.3Show/hide
Query:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS
        MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLN +
Subjt:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS

A0A6J1G993 villin-1 isoform X24.2e-2296.3Show/hide
Query:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS
        MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLN +
Subjt:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS

A0A6J1L358 villin-14.2e-2296.3Show/hide
Query:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS
        MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLN +
Subjt:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS

SwissProt top hitse value%identityAlignment
B8ATT7 Villin-41.3e-1255.56Show/hide
Query:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS
        MS+  KD DP F+G G   GLE+W IE+ + VPVP SSHGKFY G +YI+L  +
Subjt:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS

O81643 Villin-16.5e-1256.86Show/hide
Query:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVL
        MS   KD D  FQG GT +GLEIWC+ + +++ +PKSS GKF+SG+AY+VL
Subjt:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVL

Q0J716 Villin-58.4e-1253.7Show/hide
Query:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS
        MS+  KD DP F+GAG   GLEIW IE+ + VP+P SS+GKF+ G +YI+L  +
Subjt:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS

Q0JAD9 Villin-41.3e-1255.56Show/hide
Query:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS
        MS+  KD DP F+G G   GLE+W IE+ + VPVP SSHGKFY G +YI+L  +
Subjt:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS

Q67U26 Villin-36.5e-1251.85Show/hide
Query:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS
        M++  ++ D VFQGAG   GLEIW IE L+ VPVPK SHG+F++G +Y++L  +
Subjt:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS

Arabidopsis top hitse value%identityAlignment
AT2G29890.1 villin-like 14.6e-1356.86Show/hide
Query:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVL
        MS   KD D  FQG GT +GLEIWC+ + +++ +PKSS GKF+SG+AY+VL
Subjt:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVL

AT2G29890.2 villin-like 14.6e-1356.86Show/hide
Query:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVL
        MS   KD D  FQG GT +GLEIWC+ + +++ +PKSS GKF+SG+AY+VL
Subjt:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVL

AT2G29890.3 villin-like 14.6e-1356.86Show/hide
Query:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVL
        MS   KD D  FQG GT +GLEIWC+ + +++ +PKSS GKF+SG+AY+VL
Subjt:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVL

AT4G30160.1 villin 47.8e-1355.56Show/hide
Query:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS
        MS+  +D DP FQGAG  AG+EIW IE+    P+PKSS GKF++G +YIVL  +
Subjt:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS

AT4G30160.2 villin 47.8e-1355.56Show/hide
Query:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS
        MS+  +D DP FQGAG  AG+EIW IE+    P+PKSS GKF++G +YIVL  +
Subjt:  MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCTTTTCTTTAAAGACGCGGATCCAGTGTTTCAAGGCGCCGGGACCAACGCTGGGCTGGAAATCTGGTGTATTGAAAGCCTCCGAGTTGTTCCTGTTCCAAAATC
TTCACATGGGAAGTTTTACTCTGGAAGTGCTTACATAGTTTTGAACGTAAGCTTTGCAAGATTTGCGTTTGTTACTTTATTCATTCAGAATGTTTGA
mRNA sequenceShow/hide mRNA sequence
CTCTCTCTCTCTCTCTCCTCCATGCTCTGAACTTCTGTCAGTTCTTCTTTTGCCTTGCCGTAATCATTTCCGGTGATCTTCTCTAAAGCCCTACGGAGAAGCTTGTGGGA
TACCAGAGCTATGAGCGATAATGTCGCTTTTCTTTAAAGACGCGGATCCAGTGTTTCAAGGCGCCGGGACCAACGCTGGGCTGGAAATCTGGTGTATTGAAAGCCTCCGA
GTTGTTCCTGTTCCAAAATCTTCACATGGGAAGTTTTACTCTGGAAGTGCTTACATAGTTTTGAACGTAAGCTTTGCAAGATTTGCGTTTGTTACTTTATTCATTCAGAA
TGTTTGA
Protein sequenceShow/hide protein sequence
MSLFFKDADPVFQGAGTNAGLEIWCIESLRVVPVPKSSHGKFYSGSAYIVLNVSFARFAFVTLFIQNV