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Carg23853 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23853
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionElf4 domain-containing protein
Genome locationCarg_Chr02:4177595..4177954
RNA-Seq ExpressionCarg23853
SyntenyCarg23853
Gene Ontology termsGO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR009741 - Protein EARLY FLOWERING 4 domain
IPR040462 - Protein EARLY FLOWERING 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7035362.1 Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. argyrosperma]5.5e-56100Show/hide
Query:  MKNKGAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQK
        MKNKGAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQK
Subjt:  MKNKGAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQK

Query:  RCVTESKSGENNGGRGIHE
        RCVTESKSGENNGGRGIHE
Subjt:  RCVTESKSGENNGGRGIHE

KAG7949466.1 hypothetical protein I3843_13G064100 [Carya illinoinensis]4.0e-2254.7Show/hide
Query:  NKGAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRC
        NK  +S+E +  +D D   EECDMEVW  L +SF QVQS L+ NR LIQQVNEN QSRI DNL  N+ LI EINGNIS+V+SIYSDLS +F + ++Q+R 
Subjt:  NKGAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRC

Query:  VTESKSGENNGGRGIHE
        +  S++  N    G  E
Subjt:  VTESKSGENNGGRGIHE

XP_022948227.1 protein EARLY FLOWERING 4-like [Cucurbita moschata]3.3e-3271.43Show/hide
Query:  MKNKGAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQK
        MKNKGAKSDEGDK DDGDLE EECDMEVWNMLRKSF QVQSVLEHNRLLIQQVNENQQSRIS+NLVNNISLIHEIN  +   +                 
Subjt:  MKNKGAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQK

Query:  RCVTESKSGENNGGRGIHE
              KSGENNGGRGIHE
Subjt:  RCVTESKSGENNGGRGIHE

XP_023006797.1 protein ELF4-LIKE 1-like [Cucurbita maxima]2.0e-2692.11Show/hide
Query:  MKNKGAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEIN
        MKNK  KSDE D SDDGDLEAEECDMEV NMLRKSFRQVQSVLEHNRL+IQQVNENQQSRISDNLVNNISLIHEIN
Subjt:  MKNKGAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEIN

XP_023532325.1 protein EARLY FLOWERING 4-like [Cucurbita pepo subsp. pepo]8.2e-5294.96Show/hide
Query:  MKNKGAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQK
        MKNK  KSDE DKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQ+
Subjt:  MKNKGAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQK

Query:  RCVTESKSGENNGGRGIHE
        RCVTESKSGENNGG G HE
Subjt:  RCVTESKSGENNGGRGIHE

TrEMBL top hitse value%identityAlignment
A0A067LNP8 Elf4 domain-containing protein2.5e-2259.8Show/hide
Query:  DEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRCVTESKS
        ++G   D+ D+E EECD EVWN L KSFRQVQSVL+ NR LI QVNEN QSRI DN+  N+ LI EIN NIS+VISIYSDLS +F   +Q++R +    S
Subjt:  DEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRCVTESKS

Query:  GE
         E
Subjt:  GE

A0A6J1G8L9 protein EARLY FLOWERING 4-like1.6e-3271.43Show/hide
Query:  MKNKGAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQK
        MKNKGAKSDEGDK DDGDLE EECDMEVWNMLRKSF QVQSVLEHNRLLIQQVNENQQSRIS+NLVNNISLIHEIN  +   +                 
Subjt:  MKNKGAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQK

Query:  RCVTESKSGENNGGRGIHE
              KSGENNGGRGIHE
Subjt:  RCVTESKSGENNGGRGIHE

A0A6J1KWT2 protein ELF4-LIKE 1-like9.9e-2792.11Show/hide
Query:  MKNKGAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEIN
        MKNK  KSDE D SDDGDLEAEECDMEV NMLRKSFRQVQSVLEHNRL+IQQVNENQQSRISDNLVNNISLIHEIN
Subjt:  MKNKGAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEIN

A0A7J7DYC8 Elf4 domain-containing protein7.3e-2256.19Show/hide
Query:  NKGAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRC
        N   +  E +K  +G+ +AEECD+E W+ L  SFRQVQ+VL+HNR LIQQVNEN QS+I++NL  N+ LI EINGNIS+VISIYSDLS  F   +Q++  
Subjt:  NKGAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRC

Query:  VTESK
        V + K
Subjt:  VTESK

A0A7J7HN84 Elf4 domain-containing protein5.6e-2254.55Show/hide
Query:  GAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRCVT
        G   D+    DD +   EECD E W+ L KSFRQVQSVL+ NR LIQQVNEN QS++ DNLV N++LI EINGNIS+V+S+YSDLS  F   +QQ+R + 
Subjt:  GAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRCVT

Query:  ESKSGENNGG
             E + G
Subjt:  ESKSGENNGG

SwissProt top hitse value%identityAlignment
O04211 Protein EARLY FLOWERING 44.4e-1650Show/hide
Query:  EAEEC-DMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRCVTESKSGENNGG
        EAE+  D  +W  L ++FRQVQSVL+ NR LIQQVN+N QSR++DN+  N++LI E+NGNIS+V+++YSDL+ SF +           K+G + GG
Subjt:  EAEEC-DMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRCVTESKSGENNGG

O80877 Protein ELF4-LIKE 12.9e-1547.57Show/hide
Query:  NKGAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRC
        N+  + +E D  D     A E D+EVW+ L   F++ Q  L+ NR LIQ+VNEN  SRI DN+  N+ LI+EINGNIS+V+ IYSDLS +F     Q+R 
Subjt:  NKGAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRC

Query:  VTE
         T+
Subjt:  VTE

Q570U6 Protein ELF4-LIKE 43.3e-1144.94Show/hide
Query:  DMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRCVTESKSGENNG
        D ++    +KSF  VQ +L+ NRLLI ++N+N +S+  DNL  N+ LI E+N NI RV S+Y DLS SF       R V  S  GE++G
Subjt:  DMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRCVTESKSGENNG

Q8S8F5 Protein ELF4-LIKE 37.8e-1342.11Show/hide
Query:  ECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRCVTESKSGENNGGRGI
        + D ++     KSF QVQ++L+HNRLLI ++N+N +S+I DNL  N+ LI E+N N+ RV  +Y DLS +F  +++     +E  S E  G R I
Subjt:  ECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRCVTESKSGENNGGRGI

Q94BS8 Protein ELF4-LIKE 29.6e-1142.55Show/hide
Query:  EAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRCVTESKSGENNG
        E  + D ++    +KSF QVQ +L+ NRLLI ++N+N +S+ +D+L  N+ LI E+N NI  V S+Y DLS SF       R V  S  GE+ G
Subjt:  EAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRCVTESKSGENNG

Arabidopsis top hitse value%identityAlignment
AT1G17455.1 ELF4-like 42.3e-1244.94Show/hide
Query:  DMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRCVTESKSGENNG
        D ++    +KSF  VQ +L+ NRLLI ++N+N +S+  DNL  N+ LI E+N NI RV S+Y DLS SF       R V  S  GE++G
Subjt:  DMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRCVTESKSGENNG

AT1G17455.2 ELF4-like 42.3e-1244.94Show/hide
Query:  DMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRCVTESKSGENNG
        D ++    +KSF  VQ +L+ NRLLI ++N+N +S+  DNL  N+ LI E+N NI RV S+Y DLS SF       R V  S  GE++G
Subjt:  DMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRCVTESKSGENNG

AT2G06255.1 ELF4-like 35.6e-1442.11Show/hide
Query:  ECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRCVTESKSGENNGGRGI
        + D ++     KSF QVQ++L+HNRLLI ++N+N +S+I DNL  N+ LI E+N N+ RV  +Y DLS +F  +++     +E  S E  G R I
Subjt:  ECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRCVTESKSGENNGGRGI

AT2G29950.1 ELF4-like 12.0e-1647.57Show/hide
Query:  NKGAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRC
        N+  + +E D  D     A E D+EVW+ L   F++ Q  L+ NR LIQ+VNEN  SRI DN+  N+ LI+EINGNIS+V+ IYSDLS +F     Q+R 
Subjt:  NKGAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRC

Query:  VTE
         T+
Subjt:  VTE

AT2G40080.1 Protein of unknown function (DUF1313)3.1e-1750Show/hide
Query:  EAEEC-DMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRCVTESKSGENNGG
        EAE+  D  +W  L ++FRQVQSVL+ NR LIQQVN+N QSR++DN+  N++LI E+NGNIS+V+++YSDL+ SF +           K+G + GG
Subjt:  EAEEC-DMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRCVTESKSGENNGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAACAAAGGGGCGAAGTCAGATGAGGGAGATAAAAGCGACGACGGTGATCTAGAGGCGGAGGAATGCGATATGGAGGTCTGGAATATGCTTAGGAAGAGCTTCCG
TCAGGTACAGTCCGTATTGGAACATAATCGTTTGTTAATCCAGCAGGTGAACGAGAATCAGCAGTCCAGGATCTCCGATAATCTGGTCAACAACATCTCACTGATCCATG
AAATTAATGGTAATATCTCTCGTGTTATCTCGATTTACTCTGATTTGTCTGCCAGTTTCCTCACTACAATTCAGCAGAAGCGTTGTGTTACGGAGTCGAAGTCCGGTGAA
AACAACGGAGGCAGAGGAATTCACGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAACAAAGGGGCGAAGTCAGATGAGGGAGATAAAAGCGACGACGGTGATCTAGAGGCGGAGGAATGCGATATGGAGGTCTGGAATATGCTTAGGAAGAGCTTCCG
TCAGGTACAGTCCGTATTGGAACATAATCGTTTGTTAATCCAGCAGGTGAACGAGAATCAGCAGTCCAGGATCTCCGATAATCTGGTCAACAACATCTCACTGATCCATG
AAATTAATGGTAATATCTCTCGTGTTATCTCGATTTACTCTGATTTGTCTGCCAGTTTCCTCACTACAATTCAGCAGAAGCGTTGTGTTACGGAGTCGAAGTCCGGTGAA
AACAACGGAGGCAGAGGAATTCACGAGTAA
Protein sequenceShow/hide protein sequence
MKNKGAKSDEGDKSDDGDLEAEECDMEVWNMLRKSFRQVQSVLEHNRLLIQQVNENQQSRISDNLVNNISLIHEINGNISRVISIYSDLSASFLTTIQQKRCVTESKSGE
NNGGRGIHE