; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg23854 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23854
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionStructural constituent of ribosome, putative
Genome locationCarg_Chr02:4168383..4173609
RNA-Seq ExpressionCarg23854
SyntenyCarg23854
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005763 - mitochondrial small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR001648 - Ribosomal protein S18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022148322.1 uncharacterized protein LOC111017003 [Momordica charantia]1.0e-3942.71Show/hide
Query:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARVW---------------------------------------MMRENPIRLSLLMTLNVGYLVAYLW
        MR VQ A R++GGG++++FKQ S LRSLSTNAAR                                         + R    R  +   L+ G     L+
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARVW---------------------------------------MMRENPIRLSLLMTLNVGYLVAYLW

Query:  AIPETMLSLRSLID--------------------------LVNLVKGS-----DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGII
         + + + +L   +D                           ++   GS     DLDL KPGVRKPPKRVEFQVTTEEVL+KADFRNVRF+ANFITDAGII
Subjt:  AIPETMLSLRSLID--------------------------LVNLVKGS-----DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGII

Query:  NKRSKVNFSSKTQVLNKLSRQPSSDLIISTILQTVPKHRGKLPKHRGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRP
        NKRSK   S+K Q   K++R+                   K  +  GLMPFTTMGTK+FVFGKTME LDKDYEYEVF+N  DADRG P
Subjt:  NKRSKVNFSSKTQVLNKLSRQPSSDLIISTILQTVPKHRGKLPKHRGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRP

XP_022947026.1 uncharacterized protein LOC111451027 isoform X1 [Cucurbita moschata]3.4e-5149.83Show/hide
Query:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAAR--------------------------------------VWMMRENPIRLSLLMTLNVGYLVAYLWA
        MRNVQVAFRTIGGGITRKFKQPSALR+LSTNAAR                                        + R    R  +   L+ G     L+ 
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAAR--------------------------------------VWMMRENPIRLSLLMTLNVGYLVAYLWA

Query:  IPETMLSLRSLIDLVNLVKGS--------------------------------DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGII
        I + + +L   +D   L K S                                DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRF+ANFITDAGII
Subjt:  IPETMLSLRSLIDLVNLVKGS--------------------------------DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGII

Query:  NKRSKVNFSSKTQVLNKLSRQPSSDLIISTILQTVPKHRGKLPKHRGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRPH
        NKRSK   S+K Q   K++R+                   K  +  GLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRPH
Subjt:  NKRSKVNFSSKTQVLNKLSRQPSSDLIISTILQTVPKHRGKLPKHRGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRPH

XP_023007407.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111499912 [Cucurbita maxima]1.4e-3969.85Show/hide
Query:  DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIINKRSKVNFSSKTQVLNKLSRQPSSDLIISTILQTVPKHRGKLPKHRGLMPFTT
        DLDLTKPGVRK PKRVEF V TEEVLR ADFRNVRF+ANFITDAGIINKRSK   S+K Q   K++R+                   K  +  GLMP TT
Subjt:  DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIINKRSKVNFSSKTQVLNKLSRQPSSDLIISTILQTVPKHRGKLPKHRGLMPFTT

Query:  MGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRPH
        MGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRPH
Subjt:  MGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRPH

XP_023007407.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111499912 [Cucurbita maxima]2.4e-0488.24Show/hide
Query:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAAR
        MRNV   FRTIGGGITRKFKQPSALR+LSTNAAR
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAAR

XP_023007407.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111499912 [Cucurbita maxima]1.8e-3944.17Show/hide
Query:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAAR--------------------------------------VWMMRENPIRLSLLMTLNVGYLVAYLWA
        MR VQVA RT+GGG++R+FKQPS LR+LSTNAAR                                        + R    R  +   L+ G     L+ 
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAAR--------------------------------------VWMMRENPIRLSLLMTLNVGYLVAYLWA

Query:  IPETMLSLRSLIDLVNLVKGS------------------------------DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIINK
        + + + +L   +D   L K S                              DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRF+ANFITDAGII K
Subjt:  IPETMLSLRSLIDLVNLVKGS------------------------------DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIINK

Query:  RSKVNFSSKTQVLNKLSRQPSSDLIISTILQTVPKHRGKLPKHRGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADR
        RSK   S+K Q   K++R+                   K  +  GLMPFTTMGTKSFVFGKTME LDKDYEYE+F+NN D +R
Subjt:  RSKVNFSSKTQVLNKLSRQPSSDLIISTILQTVPKHRGKLPKHRGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADR

XP_023532312.1 uncharacterized protein LOC111794503 [Cucurbita pepo subsp. pepo]1.5e-4373.53Show/hide
Query:  DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIINKRSKVNFSSKTQVLNKLSRQPSSDLIISTILQTVPKHRGKLPKHRGLMPFTT
        DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRF+ANFITDAGIINKRSK   S+K Q   K++R+                   K  +  GLMPFTT
Subjt:  DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIINKRSKVNFSSKTQVLNKLSRQPSSDLIISTILQTVPKHRGKLPKHRGLMPFTT

Query:  MGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRPH
        MGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRPH
Subjt:  MGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRPH

TrEMBL top hitse value%identityAlignment
A0A6J1D4R9 uncharacterized protein LOC1110170035.0e-4042.71Show/hide
Query:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARVW---------------------------------------MMRENPIRLSLLMTLNVGYLVAYLW
        MR VQ A R++GGG++++FKQ S LRSLSTNAAR                                         + R    R  +   L+ G     L+
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARVW---------------------------------------MMRENPIRLSLLMTLNVGYLVAYLW

Query:  AIPETMLSLRSLID--------------------------LVNLVKGS-----DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGII
         + + + +L   +D                           ++   GS     DLDL KPGVRKPPKRVEFQVTTEEVL+KADFRNVRF+ANFITDAGII
Subjt:  AIPETMLSLRSLID--------------------------LVNLVKGS-----DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGII

Query:  NKRSKVNFSSKTQVLNKLSRQPSSDLIISTILQTVPKHRGKLPKHRGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRP
        NKRSK   S+K Q   K++R+                   K  +  GLMPFTTMGTK+FVFGKTME LDKDYEYEVF+N  DADRG P
Subjt:  NKRSKVNFSSKTQVLNKLSRQPSSDLIISTILQTVPKHRGKLPKHRGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRP

A0A6J1G586 uncharacterized protein LOC111451027 isoform X11.7e-5149.83Show/hide
Query:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAAR--------------------------------------VWMMRENPIRLSLLMTLNVGYLVAYLWA
        MRNVQVAFRTIGGGITRKFKQPSALR+LSTNAAR                                        + R    R  +   L+ G     L+ 
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAAR--------------------------------------VWMMRENPIRLSLLMTLNVGYLVAYLWA

Query:  IPETMLSLRSLIDLVNLVKGS--------------------------------DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGII
        I + + +L   +D   L K S                                DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRF+ANFITDAGII
Subjt:  IPETMLSLRSLIDLVNLVKGS--------------------------------DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGII

Query:  NKRSKVNFSSKTQVLNKLSRQPSSDLIISTILQTVPKHRGKLPKHRGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRPH
        NKRSK   S+K Q   K++R+                   K  +  GLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRPH
Subjt:  NKRSKVNFSSKTQVLNKLSRQPSSDLIISTILQTVPKHRGKLPKHRGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRPH

A0A6J1JHF0 uncharacterized protein LOC1114845132.5e-3943.75Show/hide
Query:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAAR--------------------------------------VWMMRENPIRLSLLMTLNVGYLVAYLWA
        M  VQVA RT+GGG++R+FKQPS LR+LSTNAAR                                        + R    R  +   L+ G     L+ 
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAAR--------------------------------------VWMMRENPIRLSLLMTLNVGYLVAYLWA

Query:  IPETMLSLRSLIDLVNLVKGS--------------------------------DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGII
        + + + +L   +D   L K S                                DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRF+ANFITDAGII
Subjt:  IPETMLSLRSLIDLVNLVKGS--------------------------------DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGII

Query:  NKRSKVNFSSKTQVLNKLSRQPSSDLIISTILQTVPKHRGKLPKHRGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRP
         KRSK   S+K Q   K++R+                   K  +  GLMPFTTMGTKSFVFGKTME LDKDYEYEVF+NN   D G P
Subjt:  NKRSKVNFSSKTQVLNKLSRQPSSDLIISTILQTVPKHRGKLPKHRGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRP

A0A6J1KYL3 LOW QUALITY PROTEIN: uncharacterized protein LOC1114999126.6e-4069.85Show/hide
Query:  DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIINKRSKVNFSSKTQVLNKLSRQPSSDLIISTILQTVPKHRGKLPKHRGLMPFTT
        DLDLTKPGVRK PKRVEF V TEEVLR ADFRNVRF+ANFITDAGIINKRSK   S+K Q   K++R+                   K  +  GLMP TT
Subjt:  DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIINKRSKVNFSSKTQVLNKLSRQPSSDLIISTILQTVPKHRGKLPKHRGLMPFTT

Query:  MGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRPH
        MGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRPH
Subjt:  MGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRPH

A0A6J1KYL3 LOW QUALITY PROTEIN: uncharacterized protein LOC1114999121.2e-0488.24Show/hide
Query:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAAR
        MRNV   FRTIGGGITRKFKQPSALR+LSTNAAR
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAAR

A0A6J1KYL3 LOW QUALITY PROTEIN: uncharacterized protein LOC1114999121.1e-3944.29Show/hide
Query:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAAR--------------------------------------VWMMRENPIRLSLLMTLNVGYLVAYLWA
        MR VQVA RT+GGG++R+FKQPS LR+LSTNAAR                                        + R    R  +   L+ G     L+ 
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAAR--------------------------------------VWMMRENPIRLSLLMTLNVGYLVAYLWA

Query:  IPETMLSLRSLIDLVNLVKGS--------------------------------DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGII
        + + + +L   +D   L K S                                DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRF+ANFITDAGII
Subjt:  IPETMLSLRSLIDLVNLVKGS--------------------------------DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGII

Query:  NKRSKVNFSSKTQVLNKLSRQPSSDLIISTILQTVPKHRGKLPKHRGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENN
         KRSK   S+K Q   K++R+                   K  +  GLMPFTTMGTKSFVFGKTME LDKDYEYEVF+NN
Subjt:  NKRSKVNFSSKTQVLNKLSRQPSSDLIISTILQTVPKHRGKLPKHRGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G07210.1 Ribosomal protein S182.1e-2250.43Show/hide
Query:  QVTTEEVLRKADFRNVRFVANFITDAGIINKRSKVNFSSKTQVLNKLSRQPSSDLIISTILQTVPKHRGKLPKHRGLMPFTTMGTKSFVFGKTMEYLDKD
        +VTTEEVL+ ADFRNVRF+ANFIT+AGII KR +   S+K Q   K++R+                   K  +  GLMPFTTMGTK+F FGKTME  D+D
Subjt:  QVTTEEVLRKADFRNVRFVANFITDAGIINKRSKVNFSSKTQVLNKLSRQPSSDLIISTILQTVPKHRGKLPKHRGLMPFTTMGTKSFVFGKTMEYLDKD

Query:  YEYEVFENNTDADRG
        +EYEV +++ + D G
Subjt:  YEYEVFENNTDADRG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAACGTTCAGGTTGCTTTTCGAACCATTGGAGGTGGCATAACGAGGAAATTTAAGCAACCTTCTGCGCTCAGAAGCCTTTCCACAAACGCCGCTCGAGTTTGGAT
GATGAGGGAAAATCCAATTCGTTTGAGTCTGCTGATGACTTTGAACGTCGGATATTTGGTGGCGTATCTTTGGGCGATTCCGGAAACGATGCTTTCTTTGAGAAGCTTGA
TAGACTTGGTAAACCTCGTGAAAGGATCGGATCTGGATCTAACAAAGCCTGGTGTACGCAAACCTCCCAAAAGAGTTGAGTTTCAGGTGACGACGGAGGAGGTCTTAAGA
AAAGCTGATTTCAGGAATGTTAGGTTTGTGGCGAATTTTATTACCGATGCCGGGATCATTAACAAGAGGAGCAAGGTAAACTTTTCGAGCAAAACTCAGGTTTTGAACAA
GTTGAGTCGTCAACCTTCATCTGACCTGATCATTTCAACAATTTTGCAGACAGTGCCAAAGCACAGAGGAAAGTTGCCAAAGCACAGAGGCTTAATGCCTTTCACAACAA
TGGGAACCAAATCATTTGTTTTTGGGAAGACCATGGAGTATCTCGATAAGGACTATGAATATGAAGTTTTCGAGAATAATACCGATGCAGATAGAGGACGCCCACATGTT
CATGATCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGAACGTTCAGGTTGCTTTTCGAACCATTGGAGGTGGCATAACGAGGAAATTTAAGCAACCTTCTGCGCTCAGAAGCCTTTCCACAAACGCCGCTCGAGTTTGGAT
GATGAGGGAAAATCCAATTCGTTTGAGTCTGCTGATGACTTTGAACGTCGGATATTTGGTGGCGTATCTTTGGGCGATTCCGGAAACGATGCTTTCTTTGAGAAGCTTGA
TAGACTTGGTAAACCTCGTGAAAGGATCGGATCTGGATCTAACAAAGCCTGGTGTACGCAAACCTCCCAAAAGAGTTGAGTTTCAGGTGACGACGGAGGAGGTCTTAAGA
AAAGCTGATTTCAGGAATGTTAGGTTTGTGGCGAATTTTATTACCGATGCCGGGATCATTAACAAGAGGAGCAAGGTAAACTTTTCGAGCAAAACTCAGGTTTTGAACAA
GTTGAGTCGTCAACCTTCATCTGACCTGATCATTTCAACAATTTTGCAGACAGTGCCAAAGCACAGAGGAAAGTTGCCAAAGCACAGAGGCTTAATGCCTTTCACAACAA
TGGGAACCAAATCATTTGTTTTTGGGAAGACCATGGAGTATCTCGATAAGGACTATGAATATGAAGTTTTCGAGAATAATACCGATGCAGATAGAGGACGCCCACATGTT
CATGATCGTTGA
Protein sequenceShow/hide protein sequence
MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARVWMMRENPIRLSLLMTLNVGYLVAYLWAIPETMLSLRSLIDLVNLVKGSDLDLTKPGVRKPPKRVEFQVTTEEVLR
KADFRNVRFVANFITDAGIINKRSKVNFSSKTQVLNKLSRQPSSDLIISTILQTVPKHRGKLPKHRGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRPHV
HDR