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Carg23865 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23865
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat-containing protein, chloroplastic
Genome locationCarg_Chr02:4107047..4108399
RNA-Seq ExpressionCarg23865
SyntenyCarg23865
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605401.1 putative N-acetyltransferase HLS1-like protein, partial [Cucurbita argyrosperma subsp. sororia]6.7e-2194.83Show/hide
Query:  RSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELKVVQERG
        R  VDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHEL+VVQERG
Subjt:  RSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELKVVQERG
KAG7035351.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-25100Show/hide
Query:  MIIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELKVVQERG
        MIIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELKVVQERG
Subjt:  MIIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELKVVQERG
XP_008465268.1 PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Cucumis melo]1.6e-1169.09Show/hide
Query:  IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK
        + ++  VD DYRGA KM+LHLR SGL PEVYSYLIAMT +VKE NE AKAL +LK
Subjt:  IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK
XP_022148369.1 pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Momordica charantia]7.4e-1269.09Show/hide
Query:  IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK
        + ++  VD DYRGA K++LHLR SGLNPEVYSYLIAMT +VKE NE AKAL +LK
Subjt:  IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK
XP_022947356.1 uncharacterized protein LOC111451243 [Cucurbita moschata]1.6e-1490Show/hide
Query:  RGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELKVVQERG
        RGAEKMLLH R SGLNPEVY YLIAMTVLVKEFNELAKALH+L+VVQERG
Subjt:  RGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELKVVQERG
TrEMBL top hitse value%identityAlignment
A0A0A0KC35 Uncharacterized protein8.0e-1269.09Show/hide
Query:  IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK
        + ++  VD DYRGA KM+LHLR SGL PEVYSYLIAMT +VKE NE AKAL +LK
Subjt:  IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK
A0A1S3CNE0 pentatricopeptide repeat-containing protein At2g30100, chloroplastic8.0e-1269.09Show/hide
Query:  IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK
        + ++  VD DYRGA KM+LHLR SGL PEVYSYLIAMT +VKE NE AKAL +LK
Subjt:  IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK
A0A5A7VNN8 Pentatricopeptide repeat-containing protein8.0e-1269.09Show/hide
Query:  IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK
        + ++  VD DYRGA KM+LHLR SGL PEVYSYLIAMT +VKE NE AKAL +LK
Subjt:  IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK
A0A6J1D3T2 pentatricopeptide repeat-containing protein At2g30100, chloroplastic3.6e-1269.09Show/hide
Query:  IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK
        + ++  VD DYRGA K++LHLR SGLNPEVYSYLIAMT +VKE NE AKAL +LK
Subjt:  IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK
A0A6J1G668 uncharacterized protein LOC1114512437.7e-1590Show/hide
Query:  RGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELKVVQERG
        RGAEKMLLH R SGLNPEVY YLIAMTVLVKEFNELAKALH+L+VVQERG
Subjt:  RGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELKVVQERG
SwissProt top hitse value%identityAlignment
Q0WNN7 Pentatricopeptide repeat-containing protein At2g30100, chloroplastic3.2e-1058.18Show/hide
Query:  IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK
        + ++  VD DYR A  M++ LR SGL PE YSYLIAMT +VKE N L K L ELK
Subjt:  IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK
Arabidopsis top hitse value%identityAlignment
AT2G30100.1 pentatricopeptide (PPR) repeat-containing protein2.3e-1158.18Show/hide
Query:  IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK
        + ++  VD DYR A  M++ LR SGL PE YSYLIAMT +VKE N L K L ELK
Subjt:  IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTATATATCGTTCGCCGGTTGATGCTGACTATAGAGGTGCAGAGAAAATGCTGCTGCATCTTAGACATTCTGGATTAAACCCAGAGGTATATAGCTATCTCATCGC
CATGACTGTTTTGGTTAAAGAGTTTAATGAATTAGCAAAAGCTCTACACGAACTCAAAGTTGTGCAAGAGAGGGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGATTATATATCGTTCGCCGGTTGATGCTGACTATAGAGGTGCAGAGAAAATGCTGCTGCATCTTAGACATTCTGGATTAAACCCAGAGGTATATAGCTATCTCATCGC
CATGACTGTTTTGGTTAAAGAGTTTAATGAATTAGCAAAAGCTCTACACGAACTCAAAGTTGTGCAAGAGAGGGGATAG
Protein sequenceShow/hide protein sequence
MIIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELKVVQERG