; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg23889 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23889
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionhistone deacetylase complex subunit SAP18-like
Genome locationCarg_Chr06:7347203..7349845
RNA-Seq ExpressionCarg23889
SyntenyCarg23889
Gene Ontology termsGO:0045892 - negative regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003714 - transcription corepressor activity (molecular function)
InterPro domainsIPR010516 - Sin3 associated polypeptide p18
IPR042534 - Sin3 associated polypeptide p18 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147400.1 histone deacetylase complex subunit SAP18 [Momordica charantia]5.8e-7595.27Show/hide
Query:  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGAPPR PH PPRPRLEPVDREKTCPLLLRVFTK+G HHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII
        LVYPDRHGRFVVREVGKTFSFGNGR DD+LALAELGFQIGDYLDVAI+
Subjt:  LVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII

XP_022943948.1 histone deacetylase complex subunit SAP18-like [Cucurbita moschata]6.9e-92100Show/hide
Query:  MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLR
        MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLR
Subjt:  MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLR

Query:  ELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII
        ELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII
Subjt:  ELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII

XP_022974173.1 histone deacetylase complex subunit SAP18-like [Cucurbita maxima]1.5e-9199.42Show/hide
Query:  MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLR
        MRPPGLAYKLQKLPEVA+NTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLR
Subjt:  MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLR

Query:  ELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII
        ELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII
Subjt:  ELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII

XP_023538738.1 histone deacetylase complex subunit SAP18 [Cucurbita pepo subsp. pepo]5.6e-78100Show/hide
Query:  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII
        LVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII
Subjt:  LVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII

XP_038879427.1 histone deacetylase complex subunit SAP18 [Benincasa hispida]3.8e-7496.62Show/hide
Query:  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGA PRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII
        LVYPDRHGRFV+REVGKTFSFGNGR DD+LALAELGFQIGDYLDVAII
Subjt:  LVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII

TrEMBL top hitse value%identityAlignment
A0A1S3AVL4 histone deacetylase complex subunit SAP182.4e-7495.95Show/hide
Query:  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGAPPRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII
        LVYPDRHGRFV+REVGKTFSFGN R DD+LAL ELGFQIGDYLDVAII
Subjt:  LVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII

A0A5D3D2K7 Histone deacetylase complex subunit SAP182.4e-7495.95Show/hide
Query:  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGAPPRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII
        LVYPDRHGRFV+REVGKTFSFGN R DD+LAL ELGFQIGDYLDVAII
Subjt:  LVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII

A0A6J1D024 histone deacetylase complex subunit SAP182.8e-7595.27Show/hide
Query:  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGAPPR PH PPRPRLEPVDREKTCPLLLRVFTK+G HHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII
        LVYPDRHGRFVVREVGKTFSFGNGR DD+LALAELGFQIGDYLDVAI+
Subjt:  LVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII

A0A6J1FXI8 histone deacetylase complex subunit SAP18-like3.3e-92100Show/hide
Query:  MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLR
        MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLR
Subjt:  MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLR

Query:  ELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII
        ELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII
Subjt:  ELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII

A0A6J1IFF7 histone deacetylase complex subunit SAP18-like7.4e-9299.42Show/hide
Query:  MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLR
        MRPPGLAYKLQKLPEVA+NTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLR
Subjt:  MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLR

Query:  ELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII
        ELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII
Subjt:  ELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII

SwissProt top hitse value%identityAlignment
O00422 Histone deacetylase complex subunit SAP186.6e-2953.72Show/hide
Query:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRS
        +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA+V+ D +   + V+E+G T S G   +
Subjt:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRS

Query:  DDNLALAELGFQIGDYLDVAI
        DD++ L    FQIGDYLD+AI
Subjt:  DDNLALAELGFQIGDYLDVAI

O55128 Histone deacetylase complex subunit SAP188.6e-2953.72Show/hide
Query:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRS
        +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA+V+ D +   + V+E+G T S G   +
Subjt:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRS

Query:  DDNLALAELGFQIGDYLDVAI
        DD++ L    FQIGDYLD+AI
Subjt:  DDNLALAELGFQIGDYLDVAI

O64644 Histone deacetylase complex subunit SAP188.2e-4866.67Show/hide
Query:  AEAPRRAYGAPPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS
        AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVRGKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LS
Subjt:  AEAPRRAYGAPPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS

Query:  FALVYPDRHGRFVVREVGKTFSFGNGRS-DDNLALAELGFQIGDYLDVAI
        FA VYP+  G + VREVG+T ++ N +  DD+  L+EL F+IGDYLDVAI
Subjt:  FALVYPDRHGRFVVREVGKTFSFGNGRS-DDNLALAELGFQIGDYLDVAI

Q3T022 Histone deacetylase complex subunit SAP186.6e-2953.72Show/hide
Query:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRS
        +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA+V+ D +   + V+E+G T S G   +
Subjt:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRS

Query:  DDNLALAELGFQIGDYLDVAI
        DD++ L    FQIGDYLD+AI
Subjt:  DDNLALAELGFQIGDYLDVAI

Q5RDT5 Histone deacetylase complex subunit SAP186.6e-2953.72Show/hide
Query:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRS
        +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA+V+ D +   + V+E+G T S G   +
Subjt:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRS

Query:  DDNLALAELGFQIGDYLDVAI
        DD++ L    FQIGDYLD+AI
Subjt:  DDNLALAELGFQIGDYLDVAI

Arabidopsis top hitse value%identityAlignment
AT2G45640.1 SIN3 associated polypeptide P185.9e-4966.67Show/hide
Query:  AEAPRRAYGAPPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS
        AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVRGKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LS
Subjt:  AEAPRRAYGAPPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS

Query:  FALVYPDRHGRFVVREVGKTFSFGNGRS-DDNLALAELGFQIGDYLDVAI
        FA VYP+  G + VREVG+T ++ N +  DD+  L+EL F+IGDYLDVAI
Subjt:  FALVYPDRHGRFVVREVGKTFSFGNGRS-DDNLALAELGFQIGDYLDVAI

AT2G45640.2 SIN3 associated polypeptide P186.1e-4664.67Show/hide
Query:  AEAPRRAYGAPPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS
        AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVRGKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LS
Subjt:  AEAPRRAYGAPPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS

Query:  FALVYPDRHGRFVVREVGKTFSFGNGRS-DDNLALAELGFQIGDYLDVAI
        FA VYP+  G +    VG+T ++ N +  DD+  L+EL F+IGDYLDVAI
Subjt:  FALVYPDRHGRFVVREVGKTFSFGNGRS-DDNLALAELGFQIGDYLDVAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGCCTCCGGGCCTCGCCTATAAACTGCAGAAGCTTCCAGAAGTAGCAGAAAATACAGACACAGAAATGGCGGGAGAAGCAGAAGCACCGAGGAGAGCTTATGGCGC
TCCTCCAAGAGCCCCTCATGCGCCTCCTCGTCCTCGCTTGGAGCCAGTCGATCGCGAGAAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGATTGGGAGTCATCATT
TCAACGAAGACTTCGCTGTGAGGGGCAAGGAGCCGAGGGATGAGGTTCAAATATATACCTGGAAGGATGCTACTCTTCGCGAGCTAACTGATCTGGTCAAAGAGGTAGCT
CCAGAAGCCAGGAGAAGAAATGCTAAACTATCTTTCGCTTTGGTGTATCCAGATAGACATGGCCGGTTTGTTGTGAGAGAGGTTGGGAAGACATTCTCGTTCGGAAATGG
ACGATCAGATGATAACTTAGCTTTGGCAGAACTTGGTTTTCAGATCGGAGATTACTTGGACGTGGCAATTATATAG
mRNA sequenceShow/hide mRNA sequence
ATGCGGCCTCCGGGCCTCGCCTATAAACTGCAGAAGCTTCCAGAAGTAGCAGAAAATACAGACACAGAAATGGCGGGAGAAGCAGAAGCACCGAGGAGAGCTTATGGCGC
TCCTCCAAGAGCCCCTCATGCGCCTCCTCGTCCTCGCTTGGAGCCAGTCGATCGCGAGAAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGATTGGGAGTCATCATT
TCAACGAAGACTTCGCTGTGAGGGGCAAGGAGCCGAGGGATGAGGTTCAAATATATACCTGGAAGGATGCTACTCTTCGCGAGCTAACTGATCTGGTCAAAGAGGTAGCT
CCAGAAGCCAGGAGAAGAAATGCTAAACTATCTTTCGCTTTGGTGTATCCAGATAGACATGGCCGGTTTGTTGTGAGAGAGGTTGGGAAGACATTCTCGTTCGGAAATGG
ACGATCAGATGATAACTTAGCTTTGGCAGAACTTGGTTTTCAGATCGGAGATTACTTGGACGTGGCAATTATATAGGGAATTTTGTCGACCCGAAAAGGTCTCGTGATCC
TTTTTCCTAGTAAAGAACCAAGCTTCAATGTCGTAATGTATAATTCCATAATGTGTTTGGAAATTGTTTACATGTTTGTGTTGTGTTGTGTTGTGTTGTTCCCTTGGTCT
TTCAGGTGGAATCATGATAGTCATCTGTCTTGAATATGAAATCAATTGAGGAGTA
Protein sequenceShow/hide protein sequence
MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA
PEARRRNAKLSFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII