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Carg23897 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23897
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein LITTLE ZIPPER 3-like
Genome locationCarg_Chr06:7397547..7398655
RNA-Seq ExpressionCarg23897
SyntenyCarg23897
Gene Ontology termsNA
InterPro domainsIPR039312 - Protein LITTLE ZIPPER


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597188.1 Protein LITTLE ZIPPER 2, partial [Cucurbita argyrosperma subsp. sororia]8.4e-45100Show/hide
Query:  MCDSSRFMLLSFTRSSLRCRHQRRPIRLNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQSNSD
        MCDSSRFMLLSFTRSSLRCRHQRRPIRLNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQSNSD
Subjt:  MCDSSRFMLLSFTRSSLRCRHQRRPIRLNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQSNSD

Query:  LSD
        LSD
Subjt:  LSD

XP_022924351.1 protein LITTLE ZIPPER 1-like [Cucurbita moschata]1.5e-2573.33Show/hide
Query:  MCDSSRFMLLSFTRSSLRCRHQRRPIRLNRLFRRMRFAKDR---TGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQS
        MCDSSR   L+ TRS L  RH+RRPIR+ RL RRMRF K+     GVK EMEI+NLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQ  SK+K Q 
Subjt:  MCDSSRFMLLSFTRSSLRCRHQRRPIRLNRLFRRMRFAKDR---TGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQS

Query:  NSDLS
        +S+LS
Subjt:  NSDLS

XP_022936319.1 protein LITTLE ZIPPER 3-like [Cucurbita moschata]3.0e-4296.12Show/hide
Query:  MCDSSRFMLLSFTRSSLRCRHQRRPIRLNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQSNSD
        MCDSSRFMLLSF RSSLRCRH RRPIRL RLFRRMRFAKDRTGVKEEMEI+NLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQSNSD
Subjt:  MCDSSRFMLLSFTRSSLRCRHQRRPIRLNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQSNSD

Query:  LSD
        LSD
Subjt:  LSD

XP_022974108.1 protein LITTLE ZIPPER 3-like [Cucurbita maxima]5.1e-4295.15Show/hide
Query:  MCDSSRFMLLSFTRSSLRCRHQRRPIRLNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQSNSD
        MCDSSRFMLLSFTRSSLRCRH+RRPIRL RLFRRM+FAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQI SKRKSQ NSD
Subjt:  MCDSSRFMLLSFTRSSLRCRHQRRPIRLNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQSNSD

Query:  LSD
        LSD
Subjt:  LSD

XP_023540138.1 protein LITTLE ZIPPER 3 [Cucurbita pepo subsp. pepo]6.7e-4296.12Show/hide
Query:  MCDSSRFMLLSFTRSSLRCRHQRRPIRLNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQSNSD
        MCDSSRFMLLS TRSSLRCRH+RRPIRL RLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQ NSD
Subjt:  MCDSSRFMLLSFTRSSLRCRHQRRPIRLNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQSNSD

Query:  LSD
        LSD
Subjt:  LSD

TrEMBL top hitse value%identityAlignment
A0A6J1CZF0 protein LITTLE ZIPPER 2-like1.5e-2367.33Show/hide
Query:  MCDSSRFMLLSFTRSSLRC--RHQRRPIRLNRLFRRMRFAKDRT---GVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKS
        MCDSSR + +S TRSSL C  RH+R P+R++RL RRMR  K+     GV+ EMEI+NLKL+MENQSIIEENERLRK+AFLLHKENQVLLSQ+Q  S +K 
Subjt:  MCDSSRFMLLSFTRSSLRC--RHQRRPIRLNRLFRRMRFAKDRT---GVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKS

Query:  Q
        Q
Subjt:  Q

A0A6J1E9A8 protein LITTLE ZIPPER 1-like7.2e-2673.33Show/hide
Query:  MCDSSRFMLLSFTRSSLRCRHQRRPIRLNRLFRRMRFAKDR---TGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQS
        MCDSSR   L+ TRS L  RH+RRPIR+ RL RRMRF K+     GVK EMEI+NLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQ  SK+K Q 
Subjt:  MCDSSRFMLLSFTRSSLRCRHQRRPIRLNRLFRRMRFAKDR---TGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQS

Query:  NSDLS
        +S+LS
Subjt:  NSDLS

A0A6J1F7Z1 protein LITTLE ZIPPER 3-like1.5e-4296.12Show/hide
Query:  MCDSSRFMLLSFTRSSLRCRHQRRPIRLNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQSNSD
        MCDSSRFMLLSF RSSLRCRH RRPIRL RLFRRMRFAKDRTGVKEEMEI+NLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQSNSD
Subjt:  MCDSSRFMLLSFTRSSLRCRHQRRPIRLNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQSNSD

Query:  LSD
        LSD
Subjt:  LSD

A0A6J1IF90 protein LITTLE ZIPPER 3-like2.5e-4295.15Show/hide
Query:  MCDSSRFMLLSFTRSSLRCRHQRRPIRLNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQSNSD
        MCDSSRFMLLSFTRSSLRCRH+RRPIRL RLFRRM+FAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQI SKRKSQ NSD
Subjt:  MCDSSRFMLLSFTRSSLRCRHQRRPIRLNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQSNSD

Query:  LSD
        LSD
Subjt:  LSD

A0A6J1IWC5 protein LITTLE ZIPPER 1-like9.5e-2673.33Show/hide
Query:  MCDSSRFMLLSFTRSSLRCRHQRRPIRLNRLFRRMRFAKDR---TGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQS
        MCDSSR   L+ TRS L  RH+RRPIR+ RL RRMRF K+     GVK EMEI+NLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQ  SK+K Q 
Subjt:  MCDSSRFMLLSFTRSSLRCRHQRRPIRLNRLFRRMRFAKDR---TGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQS

Query:  NSDLS
         S+LS
Subjt:  NSDLS

SwissProt top hitse value%identityAlignment
F4IG60 Protein LITTLE ZIPPER 13.8e-0853.97Show/hide
Query:  IRLNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQ
        +R+ RL RR R  ++    +++ME+ NLKLY+ENQ+II ENE+L+KKA LLH+EN+ L S LQ
Subjt:  IRLNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQ

Q56WL5 Protein LITTLE ZIPPER 45.2e-0559.26Show/hide
Query:  MEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL-QILSKRKSQSNSD
        ME  N KLY++N  II+ENERLRKKA +L++ENQ LL +L Q LSK K+ S S+
Subjt:  MEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL-QILSKRKSQSNSD

Q9LXI8 Protein LITTLE ZIPPER 34.0e-0557.89Show/hide
Query:  MEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL-QILSKRKSQSNSDLSD
        ME  N KL++EN  I++ENERLRKKA LL++ENQ LL QL Q LSK K+ +N   +D
Subjt:  MEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL-QILSKRKSQSNSDLSD

Q9LZX5 Protein LITTLE ZIPPER 24.3e-0753.23Show/hide
Query:  IRLNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL
        +R+  L RR R  K+    ++EME+ NLKL++ENQSII ENE L+KKA LLH EN  L + L
Subjt:  IRLNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL

Arabidopsis top hitse value%identityAlignment
AT2G45450.1 protein binding2.7e-0953.97Show/hide
Query:  IRLNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQ
        +R+ RL RR R  ++    +++ME+ NLKLY+ENQ+II ENE+L+KKA LLH+EN+ L S LQ
Subjt:  IRLNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQ

AT3G52770.1 protein binding2.8e-0657.89Show/hide
Query:  MEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL-QILSKRKSQSNSDLSD
        ME  N KL++EN  I++ENERLRKKA LL++ENQ LL QL Q LSK K+ +N   +D
Subjt:  MEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL-QILSKRKSQSNSDLSD

AT3G60890.1 protein binding3.0e-0853.23Show/hide
Query:  IRLNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL
        +R+  L RR R  K+    ++EME+ NLKL++ENQSII ENE L+KKA LLH EN  L + L
Subjt:  IRLNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL

AT3G60890.2 protein binding6.7e-0855Show/hide
Query:  LNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL
        LN   RR R  K+    ++EME+ NLKL++ENQSII ENE L+KKA LLH EN  L + L
Subjt:  LNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCGATTCTTCTCGATTCATGCTCCTTTCCTTCACTCGTTCCTCTTTACGTTGCCGCCATCAGCGCCGGCCGATTCGACTCAACAGGCTTTTCAGGAGGATGAGATT
CGCGAAGGATCGGACTGGCGTTAAGGAAGAGATGGAGATCGAGAATTTGAAACTGTACATGGAGAATCAAAGCATTATTGAGGAGAACGAGAGGCTGAGAAAGAAGGCGT
TTCTTCTTCACAAAGAGAATCAGGTTTTGTTATCTCAACTCCAGATTTTGTCTAAGCGAAAATCGCAGTCTAACTCCGATTTGAGCGACTAG
mRNA sequenceShow/hide mRNA sequence
AATCAAAAGGTTTGGGGGAGAAATTTGTCCGTCTCTCTCTGATCATCTTCTAGTTCTGAATTGTTCGTCATCTTTGCCTCTTTGCCATCATGATTCCTACTGTAATCATT
GCGATGAAAAGCCTCTCTTTCTCTCTCTTTCTATTCCGATTTCTTTTTTTGTTCTTCTCTCTTCTATTTATACTCTCAATTCCATTGCTGTAACCAATTCCGAATTCAAT
TTCGACAAAAATGTGCGATTCTTCTCGATTCATGCTCCTTTCCTTCACTCGTTCCTCTTTACGTTGCCGCCATCAGCGCCGGCCGATTCGACTCAACAGGCTTTTCAGGA
GGATGAGATTCGCGAAGGATCGGACTGGCGTTAAGGAAGAGATGGAGATCGAGAATTTGAAACTGTACATGGAGAATCAAAGCATTATTGAGGAGAACGAGAGGCTGAGA
AAGAAGGCGTTTCTTCTTCACAAAGAGAATCAGGTTTTGTTATCTCAACTCCAGATTTTGTCTAAGCGAAAATCGCAGTCTAACTCCGATTTGAGCGACTAGCTCGAAAA
TTAAATCATCTATAACGATCGAGTAGAGGATTTTTCAACGCTATCATAACTTTCGTGCTTCCGATTTCTTTTTCCTACGATTCCTTGGTTTGTAATCTGTCCTTATGAAA
ATAAATTAGGTTTTGATCTATAGTGGAGGGGAATAATCAAGGATAAATTCAGTTTCTAGGGCATAGATTTTGAGAAATATAGTCATGTGAAGAAATATATCATGAACTGT
TGCAATTGTAATAGAGAACTCTGTACCGTCAAAAATCGATCGATCTAAATTCTCCATTGATGAATCTTTCTTTATTGAAACTCCATTGAAGAAGCTTTGGTTGAACGGTT
CGATCTTGAAGCAAAAGAATGATTTGGTTCTTGGAACTAAAGCTTGAATCCAAATGGTGTAAAGGGAATGTAGCATCGTTCTAGAAAGCGTTGCTTTTTGGAAAGGCAAA
GTCTCTCTTCACTCC
Protein sequenceShow/hide protein sequence
MCDSSRFMLLSFTRSSLRCRHQRRPIRLNRLFRRMRFAKDRTGVKEEMEIENLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQSNSDLSD