; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg23928 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23928
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionmediator of RNA polymerase II transcription subunit 22b-like
Genome locationCarg_Chr05:4087935..4091153
RNA-Seq ExpressionCarg23928
SyntenyCarg23928
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0048193 - Golgi vesicle transport (biological process)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0016592 - mediator complex (cellular component)
GO:0030008 - TRAPP complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR009332 - Mediator of RNA polymerase II transcription subunit 22


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029838.1 Mediator of RNA polymerase II transcription subunit 22b [Cucurbita argyrosperma subsp. argyrosperma]2.6e-71100Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTSQNSLT
        VEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTSQNSLT
Subjt:  VEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTSQNSLT

XP_004145443.1 mediator of RNA polymerase II transcription subunit 22b [Cucumis sativus]2.1e-6895.33Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTSQNSLT
        VEQRIVEFNQQA+QTDR+LS+IGEEAA  LKELESHYYSSTQRT QNSLT
Subjt:  VEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTSQNSLT

XP_022929626.1 mediator of RNA polymerase II transcription subunit 22b-like [Cucurbita moschata]1.7e-7098.67Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTSQNSLT
        VEQRIVEFNQQAEQTDRI+SKIGEEAAVGLKELESHYYSSTQRTSQN LT
Subjt:  VEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTSQNSLT

XP_022996928.1 mediator of RNA polymerase II transcription subunit 22b-like isoform X1 [Cucurbita maxima]1.4e-6998Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQ AIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTSQNSLT
        VEQRIVEFN QAEQTDRILSKIGEEAAVGLKELESHYYSSTQRT QNSLT
Subjt:  VEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTSQNSLT

XP_023545554.1 mediator of RNA polymerase II transcription subunit 22b-like [Cucurbita pepo subsp. pepo]3.4e-7199.33Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTSQNSLT
        VEQRIVEFNQQAEQTDR+LSKIGEEAAVGLKELESHYYSSTQRTSQNSLT
Subjt:  VEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTSQNSLT

TrEMBL top hitse value%identityAlignment
A0A0A0M174 Uncharacterized protein1.0e-6895.33Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTSQNSLT
        VEQRIVEFNQQA+QTDR+LS+IGEEAA  LKELESHYYSSTQRT QNSLT
Subjt:  VEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTSQNSLT

A0A1S3C993 mediator of RNA polymerase II transcription subunit 22b-like isoform X26.5e-6894Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTSQNSLT
        VEQRIVEFNQQA+QT+R+LS+IGEEAA  LKELESHYYSSTQRT QN+LT
Subjt:  VEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTSQNSLT

A0A5A7TMC4 Mediator of RNA polymerase II transcription subunit 22a-like isoform X16.5e-6894Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTSQNSLT
        VEQRIVEFNQQA+QT+R+LS+IGEEAA  LKELESHYYSSTQRT QN+LT
Subjt:  VEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTSQNSLT

A0A6J1EN95 mediator of RNA polymerase II transcription subunit 22b-like8.2e-7198.67Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTSQNSLT
        VEQRIVEFNQQAEQTDRI+SKIGEEAAVGLKELESHYYSSTQRTSQN LT
Subjt:  VEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTSQNSLT

A0A6J1K851 mediator of RNA polymerase II transcription subunit 22b-like isoform X17.0e-7098Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQ AIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTSQNSLT
        VEQRIVEFN QAEQTDRILSKIGEEAAVGLKELESHYYSSTQRT QNSLT
Subjt:  VEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTSQNSLT

SwissProt top hitse value%identityAlignment
A0JPN6 Mediator of RNA polymerase II transcription subunit 222.8e-1535.77Show/hide
Query:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR
        A   A  Q ++ LLQ    R++ DI +I+DNFT ++  +++ D        +  Q+++ M +RA+ +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR
Subjt:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR

Query:  IVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSST
          +     E+ DR L  + +E ++ L ELE  YYSS+
Subjt:  IVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSST

Q54XB0 Putative mediator of RNA polymerase II transcription subunit 222.8e-1531.47Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MN G G  + P         + Q+   +++++ I  +++N+ +++ +S+VND P++N+ E + ME R S M+ A + LLK++ ELKQ  I + F+++ + 
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQR
        V  + + F+++ E+T++ +  I EE +  LKELE  YY+S+ +
Subjt:  VEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQR

Q62276 Mediator of RNA polymerase II transcription subunit 222.8e-1535.77Show/hide
Query:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR
        A   A  Q ++ LLQ    R++ DI +I+DNFT ++  +++ D        +  Q+++ M +RA+ +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR
Subjt:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR

Query:  IVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSST
          +     E+ DR L  + +E ++ L ELE  YYSS+
Subjt:  IVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSST

Q8LCH5 Mediator of RNA polymerase II transcription subunit 22b2.7e-5580Show/hide
Query:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
        G GGG+GPTAAAAAAA QKQK LLQRVETDI ++VDNFT +VNVSRV+DPPV+NSQE++MMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
Subjt:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ

Query:  RIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQR
        RI EF+Q+AE+T+R+L++I ++A+  LKELESHYYSS QR
Subjt:  RIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQR

Q9SA42 Mediator of RNA polymerase II transcription subunit 22a4.0e-5474.83Show/hide
Query:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLN
        MNK  G GGG+GPTAAAAAAA QKQK LLQRV+TDI ++VDNF  +VNV+RV+DPP++NSQE++MMEMRASR+VQAADSLLKLVSELKQTAIFSGFASLN
Subjt:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLN

Query:  DHVEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTS
        DHVEQRI EF+Q+AE+T+R+L++I ++A+  LKELESHYYSS QR++
Subjt:  DHVEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTS

Arabidopsis top hitse value%identityAlignment
AT1G07950.1 Surfeit locus protein 5 subunit 22 of Mediator complex1.9e-5680Show/hide
Query:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
        G GGG+GPTAAAAAAA QKQK LLQRVETDI ++VDNFT +VNVSRV+DPPV+NSQE++MMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
Subjt:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ

Query:  RIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQR
        RI EF+Q+AE+T+R+L++I ++A+  LKELESHYYSS QR
Subjt:  RIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQR

AT1G16430.1 Surfeit locus protein 5 subunit 22 of Mediator complex2.8e-5574.83Show/hide
Query:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLN
        MNK  G GGG+GPTAAAAAAA QKQK LLQRV+TDI ++VDNF  +VNV+RV+DPP++NSQE++MMEMRASR+VQAADSLLKLVSELKQTAIFSGFASLN
Subjt:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLN

Query:  DHVEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTS
        DHVEQRI EF+Q+AE+T+R+L++I ++A+  LKELESHYYSS QR++
Subjt:  DHVEQRIVEFNQQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAAGGCATTGGTGGTGGAACTGGCCCCACCGCAGCGGCTGCTGCGGCGGCAGCTCAGAAACAGAAACTGCTTCTTCAGAGAGTCGAAACCGATATAGCCAACAT
TGTCGACAATTTCACCCATCTTGTCAACGTCTCAAGGGTGAACGATCCACCTGTTAGGAATTCACAGGAATCTTTCATGATGGAAATGCGTGCGTCCAGAATGGTTCAGG
CAGCTGATTCTCTGCTTAAGTTGGTTTCAGAACTTAAGCAGACAGCAATCTTTTCTGGATTTGCTTCACTAAACGATCACGTGGAGCAAAGAATCGTGGAATTCAATCAG
CAGGCGGAGCAGACCGACCGTATCCTATCTAAAATTGGTGAAGAAGCTGCTGTAGGGCTTAAGGAGCTTGAATCTCATTATTATTCTTCAACACAGAGGACTAGTCAGAA
CAGCCTGACATGA
mRNA sequenceShow/hide mRNA sequence
GTGCTTCTTCTTCCCCGACATTTCTACTTCTCTCTCTTTTCAATTACCTTGCCGCCATTGCAGAGCCGATTCAATTGCCATTTCCATTTTTATTATTATTATGAACAAAG
GCATTGGTGGTGGAACTGGCCCCACCGCAGCGGCTGCTGCGGCGGCAGCTCAGAAACAGAAACTGCTTCTTCAGAGAGTCGAAACCGATATAGCCAACATTGTCGACAAT
TTCACCCATCTTGTCAACGTCTCAAGGGTGAACGATCCACCTGTTAGGAATTCACAGGAATCTTTCATGATGGAAATGCGTGCGTCCAGAATGGTTCAGGCAGCTGATTC
TCTGCTTAAGTTGGTTTCAGAACTTAAGCAGACAGCAATCTTTTCTGGATTTGCTTCACTAAACGATCACGTGGAGCAAAGAATCGTGGAATTCAATCAGCAGGCGGAGC
AGACCGACCGTATCCTATCTAAAATTGGTGAAGAAGCTGCTGTAGGGCTTAAGGAGCTTGAATCTCATTATTATTCTTCAACACAGAGGACTAGTCAGAACAGCCTGACA
TGATTTGTAAGTAGTGAATGTAAATAAGGATGTGATATTGTTGGCTTCTGAAACTCAATTTCTCGCTAACATGGATAGTAAAACATAACCGAACTCTTCTAGCCTATGTT
CTTAGCATTTTTCTTTGGCTTTTATTGTTTTGGCATGCTAGATATGCAGGAACTAGCAGAAGGGTTTGGTGTCTTTTCTTACTAAGCTTTTTAGAAGAGTAATTAGGATG
GGGAAGAAGGGCTTGACAAGGATGTAAAACATTATTTGGGAAATATGAACAATCAGAATATTATTGTTCAAACTAATGTTATTGCTGAGGACTACGGTGGCAAAAATGGC
CGAGCTTGTAGAAGGTCAAAATAACAAATAAAAACTCATAGATTCATTGATGAATGTCCCAAATATTACTTACACCTCGGGTACGTGAGGAAACATATTATTATTGTAAC
CCTCCAAGTCCACTACTACTAGATATTGTCCGATTTGGTCTGTTACACGTCACTGTCAGCTTCACAATTTTAATACATGTT
Protein sequenceShow/hide protein sequence
MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQ
QAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTSQNSLT