; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg23949 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23949
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationCarg_Chr12:3957063..3957596
RNA-Seq ExpressionCarg23949
SyntenyCarg23949
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585753.1 hypothetical protein SDJN03_18486, partial [Cucurbita argyrosperma subsp. sororia]1.4e-8799.44Show/hide
Query:  MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVA
        MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVA
Subjt:  MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVA

Query:  ASSHSPPPPAYKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK
        ASSHSPPPPA+KYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK
Subjt:  ASSHSPPPPAYKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK

KAG7020664.1 hypothetical protein SDJN02_17350, partial [Cucurbita argyrosperma subsp. argyrosperma]4.8e-88100Show/hide
Query:  MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVA
        MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVA
Subjt:  MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVA

Query:  ASSHSPPPPAYKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK
        ASSHSPPPPAYKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK
Subjt:  ASSHSPPPPAYKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK

XP_022951103.1 extensin-3-like [Cucurbita moschata]8.4e-8597.18Show/hide
Query:  MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVA
        MEHSTTTTLFFILLIVHLAGAAM SDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRP+PSPPPPPVPVA
Subjt:  MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVA

Query:  ASSHSPPPPAYKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK
        ASSHSPPPPA+KYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSP FLWALFLFHLV VLVVVK
Subjt:  ASSHSPPPPAYKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK

XP_023002897.1 leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]1.3e-6996.62Show/hide
Query:  MPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVAASSHSPPPPAYKYYFSLPPPPP
        M SD+HRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVP  ASSHSPPPPA+KYYFSLPPPPP
Subjt:  MPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVAASSHSPPPPAYKYYFSLPPPPP

Query:  VLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLV
        VLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLV
Subjt:  VLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLV

XP_023536686.1 leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]6.7e-8294.92Show/hide
Query:  MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVA
        MEHSTTTTLFFILLI  LAG AM SD+HRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVP A
Subjt:  MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVA

Query:  ASSHSPPPPAYKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK
         SSHSPPPPA+KYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLV VLVVVK
Subjt:  ASSHSPPPPAYKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK

TrEMBL top hitse value%identityAlignment
A0A0A0KD44 Uncharacterized protein1.1e-4266.31Show/hide
Query:  MEHSTTTTLF---FILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICA--PPPPPTVTLKSPPPVPHSPPMASFPLNPPP-----SPPRPTP
        MEH + T  F    ILLI+ LA  A+P D  R+VEVVPPVSLLCISECSTCP ICA  PPPPP + LKSPPPVPH PP+A FPLN PP     SPP P P
Subjt:  MEHSTTTTLF---FILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICA--PPPPPTVTLKSPPPVPHSPPMASFPLNPPP-----SPPRPTP

Query:  SPPPPP-VPVAASSHSPPPPAYKYYFSLPPPPPVLIPEPLPPT-TAAPHGNT--NAYNYYFY--ASNSCSLNSP-AFLWALFLFHLV
        SPPPPP    A SSHSPPPPA++YYF+LPPPPPVLIP P+PP+ TA PHGNT  NAYNYYFY  AS+S   + P A  W LFLFHL+
Subjt:  SPPPPP-VPVAASSHSPPPPAYKYYFSLPPPPPVLIPEPLPPT-TAAPHGNT--NAYNYYFY--ASNSCSLNSP-AFLWALFLFHLV

A0A5A7VEH7 Classical arabinogalactan protein 9-like2.4e-4568.11Show/hide
Query:  MEHSTTTTLF---FILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPP-----SPPRPTPSP
        MEH + T  F    ILLI+ LAGAA P D  R+V+VVPPVSLLCISECSTCP ICAPPPPP   LKSPPPVPH PP+A FPLN PP     SPP P+PSP
Subjt:  MEHSTTTTLF---FILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPP-----SPPRPTPSP

Query:  PPPP-VPVAASSHSPPPPAYKYYFSLPPPPPVLIPEPLPPT-TAAPHGNT--NAYNYYFY--ASNSCSLNSP-AFLWALFLFHLV
        PPPP    A SSHSPPPPA++YYF+LPPPPPVLIP P+PP+ TAAP GNT  NAYNYYFY  AS+S   + P AF W LFLFHL+
Subjt:  PPPP-VPVAASSHSPPPPAYKYYFSLPPPPPVLIPEPLPPT-TAAPHGNT--NAYNYYFY--ASNSCSLNSP-AFLWALFLFHLV

A0A6J1BT26 leucine-rich repeat extensin-like protein 34.0e-4872.78Show/hide
Query:  ILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLN--PPPSPPRPTPS-----PPPPPVPVAASSH
        ILLI+ LAGAA  S++HRLVEVVPPVSLLCISECSTCPVIC+PPPPPT  LKSPP  PHSPP+A  PLN  P PSPPRPTPS     PPPP  P+AA SH
Subjt:  ILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLN--PPPSPPRPTPS-----PPPPPVPVAASSH

Query:  SPPPPAYKYYFSLPPPPPVLIPEPLPPTTAAPHGNT--NAYNYYFYASNSCSLNSPA-FLWALFLFHLV
         PPPPA+ YYF+LPPPPPVLIP P+PP TAAPHGNT  NAYNYYFYAS S SL+ PA +L ALF+F  +
Subjt:  SPPPPAYKYYFSLPPPPPVLIPEPLPPTTAAPHGNT--NAYNYYFYASNSCSLNSPA-FLWALFLFHLV

A0A6J1GGS2 extensin-3-like4.1e-8597.18Show/hide
Query:  MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVA
        MEHSTTTTLFFILLIVHLAGAAM SDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRP+PSPPPPPVPVA
Subjt:  MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVA

Query:  ASSHSPPPPAYKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK
        ASSHSPPPPA+KYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSP FLWALFLFHLV VLVVVK
Subjt:  ASSHSPPPPAYKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK

A0A6J1KKV8 leucine-rich repeat extensin-like protein 36.3e-7096.62Show/hide
Query:  MPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVAASSHSPPPPAYKYYFSLPPPPP
        M SD+HRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVP  ASSHSPPPPA+KYYFSLPPPPP
Subjt:  MPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVAASSHSPPPPAYKYYFSLPPPPP

Query:  VLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLV
        VLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLV
Subjt:  VLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G13340.1 Leucine-rich repeat (LRR) family protein1.2e-0447.37Show/hide
Query:  STCPVICAPPP--PPTVTLKSPPPVPHSPPMASFPLNPPPSPPRP--TPSPPPPPVPVAASSHSPPPPAYKYYFSLPPPPPVLIPEPLPPTTAAP
        ST P + +PPP  PP      PPP P  PP+ S P  PPP PP P  +P PPPPP P     +SPPPP+       PPPPPV  P P PP    P
Subjt:  STCPVICAPPP--PPTVTLKSPPPVPHSPPMASFPLNPPPSPPRP--TPSPPPPPVPVAASSHSPPPPAYKYYFSLPPPPPVLIPEPLPPTTAAP

AT5G07740.1 actin binding3.5e-0445.65Show/hide
Query:  PPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPP-RPTPSPPPPPVPVAASSHSPPPPAYKYYFSLPPPPPVLIPEPL------PPTTAAPHG
        PPPPP  +  SPPP P  PP    P  PPP PP   +P PPPPP P   S   PPPP + +  S+PPPPP   P P+      PP     HG
Subjt:  PPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPP-RPTPSPPPPPVPVAASSHSPPPPAYKYYFSLPPPPPVLIPEPL------PPTTAAPHG

AT5G11990.1 proline-rich family protein1.0e-0838.76Show/hide
Query:  LFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPP---SPPRPTPSPPPPPVPVAASSHS
        +  I L++ +  A+ PSD      V+ P   LCISECSTCP IC+PPP       SPPP P S P++S P  PPP   SPP  + S  PPP+        
Subjt:  LFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPP---SPPRPTPSPPPPPVPVAASSHS

Query:  PPPPAYKYYFSLPPPPPVL-----IPEPLPPTTAAPHGNTNA---------YNYYFYASNSCSLNSPAFLWALFLFHL
        PPPP + Y+ S PPPPP+       P  +P +  +P G +           Y Y++ ASN+  L S +FL AL +  L
Subjt:  PPPPAYKYYFSLPPPPPVL-----IPEPLPPTTAAPHGNTNA---------YNYYFYASNSCSLNSPAFLWALFLFHL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACATTCCACTACAACCACCCTCTTCTTCATTCTTTTGATCGTCCACCTCGCCGGAGCCGCCATGCCCTCCGACAACCACCGTCTCGTCGAGGTAGTGCCTCCGGT
AAGCCTCCTCTGTATCAGCGAATGCTCAACTTGCCCTGTCATATGCGCACCCCCACCACCGCCCACGGTGACACTCAAGTCTCCTCCACCGGTGCCTCACTCCCCTCCGA
TGGCTTCCTTCCCACTCAACCCACCCCCATCCCCACCTCGACCAACCCCATCACCACCGCCGCCTCCAGTGCCGGTGGCAGCTTCATCTCATTCCCCACCGCCTCCCGCT
TACAAATACTATTTCAGCTTGCCACCACCGCCGCCAGTGCTGATCCCGGAGCCTCTGCCGCCGACGACGGCGGCGCCTCATGGAAATACCAATGCTTATAATTACTACTT
CTACGCTTCGAATTCATGTTCTCTGAATTCTCCGGCGTTTTTGTGGGCTCTGTTTCTCTTCCATTTGGTGCGTGTCTTGGTGGTGGTGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAACATTCCACTACAACCACCCTCTTCTTCATTCTTTTGATCGTCCACCTCGCCGGAGCCGCCATGCCCTCCGACAACCACCGTCTCGTCGAGGTAGTGCCTCCGGT
AAGCCTCCTCTGTATCAGCGAATGCTCAACTTGCCCTGTCATATGCGCACCCCCACCACCGCCCACGGTGACACTCAAGTCTCCTCCACCGGTGCCTCACTCCCCTCCGA
TGGCTTCCTTCCCACTCAACCCACCCCCATCCCCACCTCGACCAACCCCATCACCACCGCCGCCTCCAGTGCCGGTGGCAGCTTCATCTCATTCCCCACCGCCTCCCGCT
TACAAATACTATTTCAGCTTGCCACCACCGCCGCCAGTGCTGATCCCGGAGCCTCTGCCGCCGACGACGGCGGCGCCTCATGGAAATACCAATGCTTATAATTACTACTT
CTACGCTTCGAATTCATGTTCTCTGAATTCTCCGGCGTTTTTGTGGGCTCTGTTTCTCTTCCATTTGGTGCGTGTCTTGGTGGTGGTGAAGTGA
Protein sequenceShow/hide protein sequence
MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVAASSHSPPPPA
YKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK