; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg23989 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23989
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionmediator of RNA polymerase II transcription subunit 15a-like
Genome locationCarg_Chr11:9794173..9796381
RNA-Seq ExpressionCarg23989
SyntenyCarg23989
Gene Ontology termsGO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003713 - transcription coactivator activity (molecular function)
GO:0031490 - chromatin DNA binding (molecular function)
InterPro domainsIPR036529 - Coactivator CBP, KIX domain superfamily
IPR036546 - Mediator complex subunit 15, KIX domain
IPR044661 - Mediator of RNA polymerase II transcription subunit 15a/b/c-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022927776.1 mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita moschata]1.8e-53100Show/hide
Query:  MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS
        MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS
Subjt:  MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS

Query:  VSGPVSSNQP
        VSGPVSSNQP
Subjt:  VSGPVSSNQP
XP_022989020.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita maxima]9.9e-5297.27Show/hide
Query:  MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS
        MDSNHLGPAQGGEPEVDAG WRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGL+ELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS
Subjt:  MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS

Query:  VSGPVSSNQP
        +SGPVSSNQP
Subjt:  VSGPVSSNQP
XP_022989023.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbita maxima]1.1e-4791.82Show/hide
Query:  MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS
        MDSNHLGP QGGE  VDAG WRSQL P+SRHRIVN IIETLKRHIPVSGPEGL+ELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS
Subjt:  MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS

Query:  VSGPVSSNQP
        +SGPVSSNQP
Subjt:  VSGPVSSNQP
XP_023530801.1 mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo]1.2e-5299.09Show/hide
Query:  MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS
        MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGT TALPS
Subjt:  MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS

Query:  VSGPVSSNQP
        VSGPVSSNQP
Subjt:  VSGPVSSNQP
XP_023530803.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita pepo subsp. pepo]4.5e-4484.55Show/hide
Query:  MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS
        MDSNHLGPAQGGE EVDAG WRSQL P+SRHRIV+ IIETLKRH+PVSGPEGL+E+RKIAVRFEEKV+  ATSQSDYLRKISLRMLTMETK GTT ALPS
Subjt:  MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS

Query:  VSGPVSSNQP
        +SGP++SNQP
Subjt:  VSGPVSSNQP
TrEMBL top hitse value%identityAlignment
A0A6J1EI55 mediator of RNA polymerase II transcription subunit 15a-like8.8e-54100Show/hide
Query:  MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS
        MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS
Subjt:  MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS

Query:  VSGPVSSNQP
        VSGPVSSNQP
Subjt:  VSGPVSSNQP
A0A6J1EIJ8 mediator of RNA polymerase II transcription subunit 15a-like3.7e-4484.55Show/hide
Query:  MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS
        MDSNHLGPAQGGE  VDAG WRSQL P+SRHRIV+ IIETLKRH+PVSGPEGL+E+RKIAVRFEEKVY  ATSQSDYLRKISLRMLTMETK GTT ALPS
Subjt:  MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS

Query:  VSGPVSSNQP
        +SGP++SNQP
Subjt:  VSGPVSSNQP
A0A6J1JL76 mediator of RNA polymerase II transcription subunit 15a-like isoform X14.8e-5297.27Show/hide
Query:  MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS
        MDSNHLGPAQGGEPEVDAG WRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGL+ELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS
Subjt:  MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS

Query:  VSGPVSSNQP
        +SGPVSSNQP
Subjt:  VSGPVSSNQP
A0A6J1JL81 mediator of RNA polymerase II transcription subunit 15a-like isoform X35.3e-4382.73Show/hide
Query:  MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS
        MDSNHLGP QGGE  VDAG WRSQL P+SRHRIVN IIETLKRH+PVS PEG +E+RKIAVRFEEKVY  ATSQSDYLRKISLRML+METKSGTT ALPS
Subjt:  MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS

Query:  VSGPVSSNQP
        +SGP++SNQP
Subjt:  VSGPVSSNQP
A0A6J1JP13 mediator of RNA polymerase II transcription subunit 15a-like isoform X25.5e-4891.82Show/hide
Query:  MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS
        MDSNHLGP QGGE  VDAG WRSQL P+SRHRIVN IIETLKRHIPVSGPEGL+ELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS
Subjt:  MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS

Query:  VSGPVSSNQP
        +SGPVSSNQP
Subjt:  VSGPVSSNQP
SwissProt top hitse value%identityAlignment
F4I171 Mediator of RNA polymerase II transcription subunit 15a1.0e-3058.56Show/hide
Query:  MDSNHLGPA-QGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKS----GTT
        MD+N+  P+   GEP +D G WR+QLPPDSR +IVN I+ETLK+H+P SGPEG+NELR+IA RFEEK+++ A +Q+DYLRKIS++MLTMETKS    G++
Subjt:  MDSNHLGPA-QGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKS----GTT

Query:  TALPSVSGPVS
         A+P+ +   S
Subjt:  TALPSVSGPVS
Arabidopsis top hitse value%identityAlignment
AT1G15780.1 unknown protein7.1e-3258.56Show/hide
Query:  MDSNHLGPA-QGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKS----GTT
        MD+N+  P+   GEP +D G WR+QLPPDSR +IVN I+ETLK+H+P SGPEG+NELR+IA RFEEK+++ A +Q+DYLRKIS++MLTMETKS    G++
Subjt:  MDSNHLGPA-QGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKS----GTT

Query:  TALPSVSGPVS
         A+P+ +   S
Subjt:  TALPSVSGPVS
AT1G15790.1 unknown protein8.2e-2060.81Show/hide
Query:  GVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKS
        G WR+Q P  SR RIVN I+ET  + +P   PEG NELRKIAVRFEEK++N A++Q++YLR+I ++ML METKS
Subjt:  GVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKS
AT1G15790.2 unknown protein8.2e-2060.81Show/hide
Query:  GVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKS
        G WR+Q P  SR RIVN I+ET  + +P   PEG NELRKIAVRFEEK++N A++Q++YLR+I ++ML METKS
Subjt:  GVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCAAATCATTTAGGGCCTGCTCAAGGTGGAGAACCCGAAGTCGATGCCGGGGTTTGGAGGTCTCAGTTGCCGCCGGATTCTCGGCATCGAATTGTCAACAGCAT
AATTGAGACATTGAAGAGGCACATTCCTGTTTCTGGTCCTGAGGGATTGAATGAGTTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGGTTTACAATGCCGCAACCAGTC
AGTCAGATTACCTAAGGAAAATATCTCTGAGGATGCTTACTATGGAAACCAAGTCTGGGACGACCACTGCATTACCATCAGTGTCGGGCCCCGTGTCTTCCAATCAACCT
TAG
mRNA sequenceShow/hide mRNA sequence
CTCTCCTTTTGCTTTGTTATTGGGGTTTTGACGCAATTTCTTCTCGTAGGTTATTTCGAAACTTTTGAATGGATTCAAATCATTTAGGGCCTGCTCAAGGTGGAGAACCC
GAAGTCGATGCCGGGGTTTGGAGGTCTCAGTTGCCGCCGGATTCTCGGCATCGAATTGTCAACAGCATAATTGAGACATTGAAGAGGCACATTCCTGTTTCTGGTCCTGA
GGGATTGAATGAGTTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGGTTTACAATGCCGCAACCAGTCAGTCAGATTACCTAAGGAAAATATCTCTGAGGATGCTTACTA
TGGAAACCAAGTCTGGGACGACCACTGCATTACCATCAGTGTCGGGCCCCGTGTCTTCCAATCAACCTTAGTCAGAGAACATCCACAATGACAATGTTTCTTCTAATGTA
TTTACCAACTC
Protein sequenceShow/hide protein sequence
MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP