; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg23990 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23990
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionmediator of RNA polymerase II transcription subunit 15a-like
Genome locationCarg_Chr11:9797739..9799662
RNA-Seq ExpressionCarg23990
SyntenyCarg23990
Gene Ontology termsGO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003713 - transcription coactivator activity (molecular function)
GO:0031490 - chromatin DNA binding (molecular function)
InterPro domainsIPR036529 - Coactivator CBP, KIX domain superfamily
IPR036546 - Mediator complex subunit 15, KIX domain
IPR044661 - Mediator of RNA polymerase II transcription subunit 15a/b/c-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022927780.1 mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita moschata]3.1e-53100Show/hide
Query:  MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPS
        MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPS
Subjt:  MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPS

Query:  MSGPMASNQP
        MSGPMASNQP
Subjt:  MSGPMASNQP

XP_022989020.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita maxima]3.1e-4587.27Show/hide
Query:  MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPS
        MDSNHLGPAQGGE  VDAGDWRSQL P+SRHRIV+ IIETLKRH+PVSGPEGLSE+RKIAVRFEEKVY  ATSQSDYLRKISLRMLTMETK GTT ALPS
Subjt:  MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPS

Query:  MSGPMASNQP
        MSGP++SNQP
Subjt:  MSGPMASNQP

XP_022989023.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbita maxima]6.7e-4890.91Show/hide
Query:  MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPS
        MDSNHLGP QGGESGVDAGDWRSQLQPESRHRIV+KIIETLKRH+PVSGPEGLSE+RKIAVRFEEKVY  ATSQSDYLRKISLRMLTMETK GTT ALPS
Subjt:  MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPS

Query:  MSGPMASNQP
        MSGP++SNQP
Subjt:  MSGPMASNQP

XP_022989024.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X3 [Cucurbita maxima]2.1e-4994.55Show/hide
Query:  MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPS
        MDSNHLGP QGGESGVDAGDWRSQLQPESRHRIV+KIIETLKRHLPVS PEG SEVRKIAVRFEEKVYTVATSQSDYLRKISLRML+METK GTTPALPS
Subjt:  MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPS

Query:  MSGPMASNQP
        MSGPMASNQP
Subjt:  MSGPMASNQP

XP_023530803.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita pepo subsp. pepo]9.9e-5298.18Show/hide
Query:  MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPS
        MDSNHLGPAQGGES VDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKV+TVATSQSDYLRKISLRMLTMETKPGTTPALPS
Subjt:  MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPS

Query:  MSGPMASNQP
        MSGPMASNQP
Subjt:  MSGPMASNQP

TrEMBL top hitse value%identityAlignment
A0A6J1EI55 mediator of RNA polymerase II transcription subunit 15a-like1.1e-4384.55Show/hide
Query:  MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPS
        MDSNHLGPAQGGE  VDAG WRSQL P+SRHRIV+ IIETLKRH+PVSGPEGL+E+RKIAVRFEEKVY  ATSQSDYLRKISLRMLTMETK GTT ALPS
Subjt:  MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPS

Query:  MSGPMASNQP
        +SGP++SNQP
Subjt:  MSGPMASNQP

A0A6J1EIJ8 mediator of RNA polymerase II transcription subunit 15a-like1.5e-53100Show/hide
Query:  MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPS
        MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPS
Subjt:  MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPS

Query:  MSGPMASNQP
        MSGPMASNQP
Subjt:  MSGPMASNQP

A0A6J1JL76 mediator of RNA polymerase II transcription subunit 15a-like isoform X11.5e-4587.27Show/hide
Query:  MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPS
        MDSNHLGPAQGGE  VDAGDWRSQL P+SRHRIV+ IIETLKRH+PVSGPEGLSE+RKIAVRFEEKVY  ATSQSDYLRKISLRMLTMETK GTT ALPS
Subjt:  MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPS

Query:  MSGPMASNQP
        MSGP++SNQP
Subjt:  MSGPMASNQP

A0A6J1JL81 mediator of RNA polymerase II transcription subunit 15a-like isoform X31.0e-4994.55Show/hide
Query:  MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPS
        MDSNHLGP QGGESGVDAGDWRSQLQPESRHRIV+KIIETLKRHLPVS PEG SEVRKIAVRFEEKVYTVATSQSDYLRKISLRML+METK GTTPALPS
Subjt:  MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPS

Query:  MSGPMASNQP
        MSGPMASNQP
Subjt:  MSGPMASNQP

A0A6J1JP13 mediator of RNA polymerase II transcription subunit 15a-like isoform X23.2e-4890.91Show/hide
Query:  MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPS
        MDSNHLGP QGGESGVDAGDWRSQLQPESRHRIV+KIIETLKRH+PVSGPEGLSE+RKIAVRFEEKVY  ATSQSDYLRKISLRMLTMETK GTT ALPS
Subjt:  MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPS

Query:  MSGPMASNQP
        MSGP++SNQP
Subjt:  MSGPMASNQP

SwissProt top hitse value%identityAlignment
F4I171 Mediator of RNA polymerase II transcription subunit 15a3.0e-2757.14Show/hide
Query:  MDSNHLGPA-QGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETK----PGTT
        MD+N+  P+   GE  +D GDWR+QL P+SR +IV+KI+ETLK+HLP SGPEG++E+R+IA RFEEK+++ A +Q+DYLRKIS++MLTMETK     G++
Subjt:  MDSNHLGPA-QGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETK----PGTT

Query:  PALPS
         A+P+
Subjt:  PALPS

Arabidopsis top hitse value%identityAlignment
AT1G15780.1 unknown protein2.1e-2857.14Show/hide
Query:  MDSNHLGPA-QGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETK----PGTT
        MD+N+  P+   GE  +D GDWR+QL P+SR +IV+KI+ETLK+HLP SGPEG++E+R+IA RFEEK+++ A +Q+DYLRKIS++MLTMETK     G++
Subjt:  MDSNHLGPA-QGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETK----PGTT

Query:  PALPS
         A+P+
Subjt:  PALPS

AT1G15790.1 unknown protein1.0e-1747.57Show/hide
Query:  GDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETK-----------PGTTPALPSMSGPMAS
        GDWR+Q    SR RIV+KI+ET  + LP   PEG +E+RKIAVRFEEK++  A++Q++YLR+I ++ML METK             T P +P  S P  +
Subjt:  GDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETK-----------PGTTPALPSMSGPMAS

Query:  NQP
        N+P
Subjt:  NQP

AT1G15790.2 unknown protein1.0e-1747.57Show/hide
Query:  GDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETK-----------PGTTPALPSMSGPMAS
        GDWR+Q    SR RIV+KI+ET  + LP   PEG +E+RKIAVRFEEK++  A++Q++YLR+I ++ML METK             T P +P  S P  +
Subjt:  GDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETK-----------PGTTPALPSMSGPMAS

Query:  NQP
        N+P
Subjt:  NQP

AT2G10440.1 unknown protein3.7e-0435.71Show/hide
Query:  DWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQS
        DWRSQ +PE R +++ KI+E  K            ++  IA +FEE  Y++AT ++
Subjt:  DWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQS

AT2G10440.2 unknown protein7.9e-0737.68Show/hide
Query:  DWRSQLQPESRHRIVDKIIETLKRHLPVS------GPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKIS
        DWRSQ +PE R +++ KI+ +L  +  V             ++  IA +FEE  Y++AT ++DYLRK+S
Subjt:  DWRSQLQPESRHRIVDKIIETLKRHLPVS------GPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCAAATCATTTGGGGCCTGCTCAAGGTGGAGAATCCGGTGTCGATGCTGGGGATTGGAGGTCTCAATTGCAGCCGGAATCTCGGCATCGAATTGTCGACAAGAT
AATTGAGACATTGAAGAGGCACCTTCCTGTTTCGGGTCCTGAGGGGTTGAGTGAGGTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGGTTTACACTGTCGCTACCAGTC
AGTCAGATTACCTAAGGAAAATATCTCTGAGGATGCTTACTATGGAAACCAAGCCTGGGACGACCCCTGCATTACCATCAATGTCTGGGCCTATGGCTTCCAATCAACCT
TAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTCAAATCATTTGGGGCCTGCTCAAGGTGGAGAATCCGGTGTCGATGCTGGGGATTGGAGGTCTCAATTGCAGCCGGAATCTCGGCATCGAATTGTCGACAAGAT
AATTGAGACATTGAAGAGGCACCTTCCTGTTTCGGGTCCTGAGGGGTTGAGTGAGGTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGGTTTACACTGTCGCTACCAGTC
AGTCAGATTACCTAAGGAAAATATCTCTGAGGATGCTTACTATGGAAACCAAGCCTGGGACGACCCCTGCATTACCATCAATGTCTGGGCCTATGGCTTCCAATCAACCT
TAG
Protein sequenceShow/hide protein sequence
MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPSMSGPMASNQP